mRNA_H-elongata_contig100108.14.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100108.14.1
Unique NamemRNA_H-elongata_contig100108.14.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: D7FV79_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV79_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 3.950e-52
Identity = 84/115 (73.04%), Postives = 101/115 (87.83%), Query Frame = 1
Query:   46 VEAKRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPSPIVEFFPVEE--LDHRQRFQD 384
            +E  + SA+MMTFVLALSVG+AIS+LL WH+YLIC+AQTTIEFYQNQ++RSRA+QWGELW+NPFDVG KGNWQQVFG +PFLL LLPSRR PP P+++FFP+E+   D RQRF D
Sbjct:  242 LEMTQHSAIMMTFVLALSVGVAISVLLGWHIYLICSAQTTIEFYQNQSHRSRARQWGELWSNPFDVGCKGNWQQVFGPQPFLLSLLPSRRPPPXPLIDFFPLEDEDQDQRQRFSD 356          
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A835ZJ14_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ14_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.400e-33
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   46 VEAKRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPSPIVEFF 345
            +E   +SA++  F+L +S G+A+S+L FWH +L+ TAQTTIEFYQNQT ++RA+Q GEL++N F+ G +GNWQQVFG RP LL +LPSRR PP P+V FF
Sbjct:  310 LERTERSAMLFAFILTVSTGVAVSLLFFWHFFLVATAQTTIEFYQNQTRKARARQRGELYSNTFNQGFRGNWQQVFGPRPILLSILPSRRRPPPPVVPFF 409          
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A7S2FY83_9STRA (Palmitoyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FY83_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.080e-25
Identity = 53/108 (49.07%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   61 QSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPSPIVEFFPVEELDHRQRFQD 384
            +SAV  TF+LALS+G+A+S+L FWH+YL+ T+QTTIEFY NQT + RA+  G+ + NP+D+GMK NW+ VFG   + + LLPS + PP P     P E  +     +D
Sbjct:  258 RSAVSYTFILALSIGLAVSLLFFWHVYLVLTSQTTIEFYGNQTKKFRARLRGQRYRNPYDMGMKRNWEHVFGHGHWAMVLLPSTKPPPWPXXXSLPHESTETATMLRD 365          
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A7S0XLV6_9STRA (Palmitoyltransferase n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XLV6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 8.410e-25
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   61 QSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPS 327
            +SAVM TFVLALSVGIA+ IL  WHL+L+ TAQTTIEFY N T R RA+  G  +TNP+D G K NWQ VFG R  LL +LPS R PP+
Sbjct:  263 RSAVMFTFVLALSVGIAVFILFAWHLFLVFTAQTTIEFYGNTTLRHRARSRGLKFTNPYDRGFKRNWQHVFGHRHPLLAILPSSRPPPA 351          
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A4D9D1P1_9STRA (Palmitoyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1P1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.250e-24
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   52 AKRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFG-SRPFLLGLLPSRRAPPSPIV 336
            A  +SA+++TFVLA SVG+A++ LL WH++LI T QTTIEFY N+  R RA+Q G L+TNP D+G + NWQQVFG   P+   LLPS R PP+P V
Sbjct:   65 ASARSAIILTFVLAFSVGLALTGLLGWHVFLITTGQTTIEFYINKARRERARQRGFLYTNPHDLGSRQNWQQVFGRDLPWWRSLLPSTRLPPAPGV 160          
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: W7TKM1_9STRA (Palmitoyltransferase n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKM1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.060e-23
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   52 AKRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFG-SRPFLLGLLPSRRAPPSPIV 336
            A  +SA+++TFVLA SVG+A++ LL WH++LI T QTTIEFY N+  R RA+Q G L+TNP D+G + NWQQVFG   P+   LLPS R PP+P V
Sbjct:  281 ASARSAIILTFVLAFSVGLALTGLLGWHVFLITTGQTTIEFYINKARRERARQRGFLYTNPHDLGSRQNWQQVFGRDLPWWRSLLPSTRLPPAPGV 376          
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: F0YAZ2_AURAN (Palmitoyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAZ2_AURAN)

HSP 1 Score: 95.9 bits (237), Expect = 4.590e-21
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   46 VEAKRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPP 324
            V  + ++AVM TFVLA+SVG+A++IL  WH YL+ TAQTTIEFY N T R RA+  GE + NP+D G   N++QVFG+   L+ +LPS R PP
Sbjct:  237 VTNQMRTAVMFTFVLAVSVGLAVAILFGWHCYLVLTAQTTIEFYGNHTLRLRARVRGERFRNPYDRGYANNFRQVFGAAHPLIAVLPSSRKPP 329          
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A7S2J2Y9_9EUKA (Palmitoyltransferase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J2Y9_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 7.870e-21
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   55 KRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFG-SRPFLLGLLPSRRAPPSPIVEF 342
            +R   ++ +FVL LSV  A+ + +FWH YL+ T QTTIEFY N+ + S AK  GE W NP+ VG++GN++QVFG +R  +  LLPSRR PP   ++F
Sbjct:  227 RRDQLMVFSFVLTLSVLFALCLFIFWHTYLVATNQTTIEFYSNRMDASDAKSKGERWANPYSVGIRGNFEQVFGMTRNVIWWLLPSRRPPPGDGLDF 323          
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A7S2HMJ2_9STRA (Protein S-acyltransferase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HMJ2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.470e-20
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   55 KRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPSPIVEFFP 348
            + ++ V+ TF+L +SVGIA+  L  +H YLI TAQTTIEF+ N   R RA+  G  W NP+D+G K NW+QV+GS    L +LPS R P     EFFP
Sbjct:    2 EERTPVVFTFMLCVSVGIAVFCLFAFHAYLIFTAQTTIEFHGNCVKRRRARDRGTSWANPYDLGWKDNWRQVYGSMHPFLAMLPSSREP-----EFFP 94          
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A7S2XIZ5_9STRA (Palmitoyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIZ5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.720e-20
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   61 QSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPSPIVEFFPV 351
            ++ +  TF+L +SVGIA+  LL +H+YLI TAQTTIEF+ N + R  A++ G  W NP+D+G K NWQQV+GS+PF   +L S R P     EF PV
Sbjct:  138 RTQISFTFMLCISVGIAVLCLLSFHIYLILTAQTTIEFHGNISKRRMARKRGIQWINPYDLGWKKNWQQVYGSKPFFRSILASGREP-----EFLPV 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV79_ECTSI3.950e-5273.04Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835ZJ14_9STRA2.400e-3359.00Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2FY83_9STRA1.080e-2549.07Palmitoyltransferase n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0XLV6_9STRA8.410e-2564.04Palmitoyltransferase n=1 Tax=Chrysocystis fragilis... [more]
A0A4D9D1P1_9STRA1.250e-2457.29Palmitoyltransferase n=1 Tax=Nannochloropsis salin... [more]
W7TKM1_9STRA2.060e-2357.29Palmitoyltransferase n=3 Tax=Nannochloropsis gadit... [more]
F0YAZ2_AURAN4.590e-2154.84Palmitoyltransferase n=1 Tax=Aureococcus anophagef... [more]
A0A7S2J2Y9_9EUKA7.870e-2149.48Palmitoyltransferase n=1 Tax=Haptolina brevifila T... [more]
A0A7S2HMJ2_9STRA1.470e-2050.00Protein S-acyltransferase n=1 Tax=Helicotheca tame... [more]
A0A7S2XIZ5_9STRA1.720e-2050.52Palmitoyltransferase n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100108contigH-elongata_contig100108:771..2159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue7.7e-43
Seed eggNOG ortholog2880.D7FV79
Preferred nameZDHHC16
KEGG rclassRC00005
KEGG koko:K00698,ko:K18932
KEGG ReactionR02335
KEGG Pathwayko00520,map00520
GOsGO:0001654,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006464,GO:0006497,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0008150,GO:0008152,GO:0008543,GO:0009058,GO:0009059,GO:0009719,GO:0009987,GO:0010033,GO:0012505,GO:0016409,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0018345,GO:0019538,GO:0019706,GO:0019707,GO:0021537,GO:0021872,GO:0021877,GO:0021879,GO:0021898,GO:0021899,GO:0021953,GO:0022008,GO:0023052,GO:0030154,GO:0030182,GO:0030900,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0045165,GO:0048513,GO:0048663,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060322,GO:0065007,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0072359,GO:0140096,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1313@2759
EC2.3.1.225,2.4.1.16
COG Functional cat.P
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categorysignal anchor
Exons2
Model size384
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.7003222-CDS-H-elongata_contig100108:770..9351622929543.7003222-CDS-H-elongata_contig100108:770..935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100108 771..935 -
1691679062.20758-CDS-H-elongata_contig100108:770..9351691679062.20758-CDS-H-elongata_contig100108:770..935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100108 771..935 -
1622929543.7158902-CDS-H-elongata_contig100108:1940..21591622929543.7158902-CDS-H-elongata_contig100108:1940..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100108 1941..2159 -
1691679062.226221-CDS-H-elongata_contig100108:1940..21591691679062.226221-CDS-H-elongata_contig100108:1940..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100108 1941..2159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100108.14.1prot_H-elongata_contig100108.14.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100108 771..2159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100108.14.1

>prot_H-elongata_contig100108.14.1 ID=prot_H-elongata_contig100108.14.1|Name=mRNA_H-elongata_contig100108.14.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MSPPPQQLRRRSSSVVEAKRQSAVMMTFVLALSVGIAISILLFWHLYLIC
TAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGL
LPSRRAPPSPIVEFFPVEELDHRQRFQD
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mRNA from alignment at H-elongata_contig100108:771..2159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100108.14.1 ID=mRNA_H-elongata_contig100108.14.1|Name=mRNA_H-elongata_contig100108.14.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1389bp|location=Sequence derived from alignment at H-elongata_contig100108:771..2159- (Himanthalia elongata Himel1 dioecious)
ATGTCTCCTCCACCTCAGCAGCTACGACGGCGTTCCTCCTCGGTAGTGGA GGCCAAGAGACAATCGGCGGTAATGATGACCTTTGTCCTGGCGTTGTCAG TGGGCATTGCCATCTCCATCCTGCTCTTCTGGCACCTGTATCTCATATGC ACCGCGCAAACCACCATCGAGTTCTACCAGAATCAGACCAACCGATCCAG AGCCAAACAATGGGGGGAGGTGAGCACTAAACACTTTACACTAACGAGTC AACATTCCTCGTGTGTAAGGTATAGTAAGGTATAATAAGGTATAATAATA TATAGTAAGGTATAGTAAGGTACGTTACCTCTACCACTCACTGTCCAAAT CATTTTTGTTTCATCAAACATGGCAGAGTTAAAAATATCTCGATCATGGC ATGTCGTGGCTTATCTATTCAGGTATAGTATAACCTATTGGTCGCGTTGT TGTTATTTGTCATTTTCATTGTTATTGTGTTGTGAGTTGCTGTAACACCA TTAACGGTTCTATATTAAAAATGATGCGATAATGCCTCTTTCGCAAAATT ATTTCCAAAAAGCTTTTTATCATAGTATAGTGTATATAGTATAGTATATA GTATATAGTGTGTGTTACTATAATAGTTCTACTTCAACCCACTTGACTTT ATTTGACTCGGGCAAGTCACAGTAGCCGCAGGTTGAGCTGCTGAACTGAT GCGACACAGTGGCTTAGGGGTTATACCATGATGCTACTGTAGAGCTAGTA ATAGAAGAGATGCCTATAGGACATAATGGTAGGCATAATGTCAGTCATAA TGGTAGGCATAATGGTAGGCATTGCTTTTTTGCGAGCCCTAATGGTGTAG AGCTATTAGTCTACTCTAATAGATCACAACCTTTAAAAAAATCTGACACG CAACCTCTACGTGAGTTACTTACAGTACATGTTAATTGTTGATTACAGTA TAGGTTAATGATCCATTGACGTCGCACTATCACGAGTACTGTTTATTTCC CGCGCGTCCCGTATGACCTCACTCTTGATTTGATGTCACTCTTGATGTTA CCCTTGATGTGAGAATTCAATCAATCATTCAATCAATCAGTCTGTACTGT ACCGATTGGGCAGACTGGTTACCGTTACCATTACTACCATTACCAATCAA TCCAATCCACTCTACCACATCACAAGACTATATACTTTACCCGACTTGTT CCTCTGTTGTTCATTGTTCCTCAGCTGTGGACTAACCCGTTCGACGTCGG CATGAAGGGGAACTGGCAGCAAGTATTCGGCTCTCGTCCATTCTTGCTCG GTCTGCTACCTAGTCGACGGGCCCCTCCGTCCCCTATTGTGGAATTCTTC CCAGTTGAGGAGCTCGACCACCGGCAACGATTCCAAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig100108:771..2159-

>mRNA_H-elongata_contig100108.14.1 ID=mRNA_H-elongata_contig100108.14.1|Name=mRNA_H-elongata_contig100108.14.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig100108:771..2159- (Himanthalia elongata Himel1 dioecious)
ATGTCTCCTCCACCTCAGCAGCTACGACGGCGTTCCTCCTCGGTAGTGGA
GGCCAAGAGACAATCGGCGGTAATGATGACCTTTGTCCTGGCGTTGTCAG
TGGGCATTGCCATCTCCATCCTGCTCTTCTGGCACCTGTATCTCATATGC
ACCGCGCAAACCACCATCGAGTTCTACCAGAATCAGACCAACCGATCCAG
AGCCAAACAATGGGGGGAGATGTCTCCTCCACCTCAGCAGCTACGACGGC
GTTCCTCCTCGGTAGTGGAGGCCAAGAGACAATCGGCGGTAATGATGACC
TTTGTCCTGGCGTTGTCAGTGGGCATTGCCATCTCCATCCTGCTCTTCTG
GCACCTGTATCTCATATGCACCGCGCAAACCACCATCGAGTTCTACCAGA
ATCAGACCAACCGATCCAGAGCCAAACAATGGGGGGAGCTGTGGACTAAC
CCGTTCGACGTCGGCATGAAGGGGAACTGGCAGCAAGTATTCGGCTCTCG
TCCATTCTTGCTCGGTCTGCTACCTAGTCGACGGGCCCCTCCGTCCCCTA
TTGTGGAATTCTTCCCAGTTGAGGAGCTCGACCACCGGCAACGATTCCAA
GATCTGTGGACTAACCCGTTCGACGTCGGCATGAAGGGGAACTGGCAGCA
AGTATTCGGCTCTCGTCCATTCTTGCTCGGTCTGCTACCTAGTCGACGGG
CCCCTCCGTCCCCTATTGTGGAATTCTTCCCAGTTGAGGAGCTCGACCAC
CGGCAACGATTCCAAGAT
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