mRNA_H-elongata_contig11812.1400.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11812.1400.1
Unique NamemRNA_H-elongata_contig11812.1400.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11812.1400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11812contigH-elongata_contig11812:1677..3686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_004850.1
Exons3
Model size316
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11812.1400.1prot_H-elongata_contig11812.1400.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11812 1678..3686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.1516707-CDS-H-elongata_contig11812:1677..17611622929689.1516707-CDS-H-elongata_contig11812:1677..1761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11812 1678..1761 -
1691679119.6322944-CDS-H-elongata_contig11812:1677..17611691679119.6322944-CDS-H-elongata_contig11812:1677..1761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11812 1678..1761 -
1622929689.1653528-CDS-H-elongata_contig11812:2305..24701622929689.1653528-CDS-H-elongata_contig11812:2305..2470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11812 2306..2470 -
1691679119.639906-CDS-H-elongata_contig11812:2305..24701691679119.639906-CDS-H-elongata_contig11812:2305..2470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11812 2306..2470 -
1622929689.270283-CDS-H-elongata_contig11812:3620..36861622929689.270283-CDS-H-elongata_contig11812:3620..3686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11812 3621..3686 -
1691679119.647074-CDS-H-elongata_contig11812:3620..36861691679119.647074-CDS-H-elongata_contig11812:3620..3686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11812 3621..3686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11812.1400.1

>prot_H-elongata_contig11812.1400.1 ID=prot_H-elongata_contig11812.1400.1|Name=mRNA_H-elongata_contig11812.1400.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
VLRWPDERKDAGRQEAAGLVHQAKTEARRLLPVMLSIPRWRNSLDLSSAE
ARSLATALFEEEMEALSGRKGSSWKRERSAARVDREFRARCLVPLLESSE
YLQGL
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mRNA from alignment at H-elongata_contig11812:1677..3686-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11812.1400.1 ID=mRNA_H-elongata_contig11812.1400.1|Name=mRNA_H-elongata_contig11812.1400.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2010bp|location=Sequence derived from alignment at H-elongata_contig11812:1677..3686- (Himanthalia elongata Himel1 dioecious)
GTGCTCCGGTGGCCGGACGAACGGAAAGACGCAGGCCGACAGGAGGCCGC
CGGCCTCGTTCACCAGGTACTGTCCCTGAAGTCGGCAGCAGAAACAGCAG
CACCAGCTCCGTTAGCTCGATATAGGGGAAGCTACATACGGGAATAGTAT
GGGGAAATTATGCCCAGTTATGGAAATGATCTCCCTTACCCGGATAATGA
CCCCCTCCTCCCCCCTCCTCCGATTGCATGTCTTAGCCCTTTCTCTATCG
TCTGCCTCAACCTCACTACTGGGCAGCTACGAGGTCGTGAGTTACCTGGT
GGTGCTGGAGTACGTCTTCGGAGGAAGTGGAACGAAACGATCTTTGGGAA
ATTGTTTTCATCTTCGGAAACGTTATCGCTCTTTTTTTTTTATCACCCGC
TCTGCCCCTGAGAAAGAGCGAGCGTTGTTCTATATATATAATATATACCG
TTCACTATTTTAACCCCCGAAATTTTCCCCTGTCTAAAGTAGAGTCTCCT
CTAGTATACCACCATATGCTTCTGCCGTAAATTGTAAAAGCGCTCTGAGA
ACGCCGGTTCAGGCATCTGTTCGGAACCACGTCATTGTTTCACCTGGGGT
GTTTTCCGTGACCGTCAATAGTAGGGTTTGAGGCTAGAATAGCGAGACTC
ACCTGTAGAAAAAATATCTAGAGGGTGTGTGGGTGTGTTCTCGGGCGTTT
AGACATACGTTTTTTTTAAAAGGCGAAAATTACGTAGCCCCCTGTTGTTA
AAGATCGACTGCTCTCCGAATGTGTAATTTATACCAGAGTAAGTTAAAGA
ACAGCAGTGTTATGGTTGATAATATTAATCGCGTTTTCTCTACCACAATA
GTTTTGTACGTAATAATTCAAGCTTTAGGCTAGAGGAGGCAAGGGAAGAG
ACGGAGGCGTGTTTGTGAGACGCTGGTTTTCGATGAAGAACCTTTGCCCT
GGAAAAGACGCGAAGATAGTAGACATGCTATTATGCCGTTATTTCCATCT
CGAAGCCGAAAATGGGTCGGAGCGATGCAAAAGGCAGGAAGCGGGACATA
TGCACCTGTTTTGCCCTGGCATCGTGGTAAGGCATCCGATCTGCCTTCGT
TATCCGCGTTCAGTTCCCGTCCCCCGTCCCCCGCTCCCCAGCCACCTTCA
ATTTTTTTCAATGTCACTTGTTTTTTCATTCCCTGCCACTTTCGGAAACA
TCCCTCGAGAGCTCAGGCGAAAACAGAAGCGAGACGCCTTCTGCCGGTGA
TGCTTTCCATCCCAAGGTGGCGGAACTCGCTGGATCTGTCTTCCGCTGAG
GCGCGTTCGCTCGCCACCGCACTATTCGAGGAGGAGATGGAGGCGCTGTC
CGGGCGCAAAGGCTCTTCTTGGAAACGCGAGGCACGTGTCAGCAAGCGAG
CAAACCCGGTTGAAACTGCTGCGTGGGCGCGTGTTTCTTTTGAGCTACCG
TGGGTCATAGAAAGTAGAGCAGGCAACGGCCGACCGTACGAATTTATATA
GAGTTCCGTATTTTGTGCTCGTATATAGTGTAAGCATAACGTCATCGCCG
TTGCCATTACGATTGAGGCCAAGACTAAGGCCCAAGCTCGAGACGCTTCA
GAGCCGATGGCGCTGCGTATTGCACCGCGTACCATATTTGTTGGAGCACT
GTGATGCCGCACCTGGAAGAAAAAGGTGTCTGGTGTTTCCTTTTCAAACG
AAGTTACTTCCTCGCGCCCATTCTCCCGCCCCCTACAGACAGTTTGAGGC
GACAATAGGTGCGTACTGTCGCGTCCGTTCAGCCCCCCTCCCTTTTCCCT
GGTGCTAACTATACCAACCACCTCTTGAAACCCCAATCTGTAAGCTCACC
CCCCCTTCAATAACTTATTGCATAAAACTATTTTCTAACGAACGAACACA
CGGGCGCGCATCGCTAACCGCACAGCGGAGTGCTGCTCGGGTCGATAGGG
AGTTCCGAGCGCGCTGCCTGGTGCCGTTGCTGGAGAGCAGTGAGTACCTC
CAGGGTCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig11812:1677..3686-

>mRNA_H-elongata_contig11812.1400.1 ID=mRNA_H-elongata_contig11812.1400.1|Name=mRNA_H-elongata_contig11812.1400.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig11812:1677..3686- (Himanthalia elongata Himel1 dioecious)
GTGCTCCGGTGGCCGGACGAACGGAAAGACGCAGGCCGACAGGAGGCCGC
CGGCCTCGTTCACCAGGTGCTCCGGTGGCCGGACGAACGGAAAGACGCAG
GCCGACAGGAGGCCGCCGGCCTCGTTCACCAGGCGAAAACAGAAGCGAGA
CGCCTTCTGCCGGTGATGCTTTCCATCCCAAGGTGGCGGAACTCGCTGGA
TCTGTCTTCCGCTGAGGCGCGTTCGCTCGCCACCGCACTATTCGAGGAGG
AGATGGAGGCGCTGTCCGGGCGCAAAGGCTCTTCTTGGAAACGCGAGGCG
AAAACAGAAGCGAGACGCCTTCTGCCGGTGATGCTTTCCATCCCAAGGTG
GCGGAACTCGCTGGATCTGTCTTCCGCTGAGGCGCGTTCGCTCGCCACCG
CACTATTCGAGGAGGAGATGGAGGCGCTGTCCGGGCGCAAAGGCTCTTCT
TGGAAACGCGAGCGGAGTGCTGCTCGGGTCGATAGGGAGTTCCGAGCGCG
CTGCCTGGTGCCGTTGCTGGAGAGCAGTGAGTACCTCCAGGGTCTGCGGA
GTGCTGCTCGGGTCGATAGGGAGTTCCGAGCGCGCTGCCTGGTGCCGTTG
CTGGAGAGCAGTGAGTACCTCCAGGGTCTG
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