mRNA_H-elongata_contig64083.13998.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64083.13998.1
Unique NamemRNA_H-elongata_contig64083.13998.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Match: D7FXF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXF1_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 5.200e-33
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1
Query:    1 MGERGYQLKGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT 165
            MGERGYQLKG NNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT
Sbjct:    1 MGERGYQLKGANNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT 55          
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Match: K8YS72_NANGC (Pre-mRNA-splicing factor RBM22/SLT11 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YS72_NANGC)

HSP 1 Score: 105 bits (261), Expect = 3.170e-25
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 MGERGYQLKGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT 165
            MGERG Q+K   NK+ WE SDFP+VCETCLGDNPYVRMTKEP GKACKIC+RP+T
Sbjct:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFT 55          
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Match: A0A835YZV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZV2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.720e-25
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    1 MGERGYQLKGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPY 162
            MGERG QLK   NK  WEE+DFP+ CETCLGDNPYVRMTKEP GKACKICERP+
Sbjct:    1 MGERGMQLKSDLNKSGWEEADFPVACETCLGDNPYVRMTKEPAGKACKICERPF 54          
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Match: A0A7S3YHN5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHN5_HETAK)

HSP 1 Score: 102 bits (254), Expect = 9.100e-25
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    1 MGERGYQLKGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT 165
            MGERG+++K   NK+ WEE++FP+VCETCLGDNPYVRMTKE  GK+CKICERPYT
Sbjct:    1 MGERGFRIKTDINKEGWEEAEFPVVCETCLGDNPYVRMTKERFGKSCKICERPYT 55          
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Match: A0A7R9U7R9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7R9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.740e-24
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 MGERGYQLKGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT 165
            MGERG ++K   NK+ WE ++FPI+CETCLGDNPY+RMTKE  GKAC+IC+RPYT
Sbjct:    1 MGERGMKIKSDINKQGWESTEFPILCETCLGDNPYLRMTKEAFGKACQICQRPYT 55          
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Match: A0A1C7MYE5_9FUNG (Pre-mRNA-splicing factor RBM22 (Fragment) n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7MYE5_9FUNG)

HSP 1 Score: 91.3 bits (225), Expect = 8.750e-23
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   25 KGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT 165
            K   NK+ WE+++FPIVCETCLGDNPYVRMTK+P+GK CKIC+RPYT
Sbjct:    5 KADPNKQGWEDAEFPIVCETCLGDNPYVRMTKQPYGKECKICQRPYT 51          
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Match: A0A2D4BD23_PYTIN (C3H1-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD23_PYTIN)

HSP 1 Score: 96.3 bits (238), Expect = 1.230e-22
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 MGERGYQLKGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT 165
            MGERG+ +K   NK AWE  +FP +CE+CLGDNPYVRM K+PHG+ACKIC RP+T
Sbjct:    1 MGERGFAIKADTNKAAWENDEFPQLCESCLGDNPYVRMMKDPHGQACKICTRPFT 55          
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Match: A0A8K1CH38_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH38_PYTOL)

HSP 1 Score: 93.2 bits (230), Expect = 1.420e-21
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 MGERGYQLKGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT 165
            M ERG+ +K  +NK AWE  +FP +CETCLGDNPYVRM K+ HG+ACKIC+RP+T
Sbjct:    1 MTERGFAIKADSNKAAWENEEFPQLCETCLGDNPYVRMMKDAHGQACKICQRPFT 55          
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Match: A0A7S2EJN9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJN9_TRICV)

HSP 1 Score: 92.0 bits (227), Expect = 2.640e-21
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1
Query:   22 LKGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT 165
            +K  ++K+ WEE++FP+VCETCLGDNPYVRMTKEPHGK CKICE P+T
Sbjct:   36 IKRDDHKQKWEETEFPLVCETCLGDNPYVRMTKEPHGKTCKICETPFT 83          
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Match: A0A662WVL3_9STRA (C3H1-type domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVL3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.760e-21
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 MGERGYQLKGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYT 165
            MGERG+ +K    K AWE  +FP +CETCLG+NPYVRM KE HG ACKIC RP+T
Sbjct:    1 MGERGFAIKADTTKTAWESEEFPQLCETCLGENPYVRMMKEAHGSACKICARPFT 55          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64083.13998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXF1_ECTSI5.200e-3398.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YS72_NANGC3.170e-2578.18Pre-mRNA-splicing factor RBM22/SLT11 n=3 Tax=Monod... [more]
A0A835YZV2_9STRA5.720e-2579.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3YHN5_HETAK9.100e-2574.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9U7R9_9STRA4.740e-2469.09Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1C7MYE5_9FUNG8.750e-2374.47Pre-mRNA-splicing factor RBM22 (Fragment) n=1 Tax=... [more]
A0A2D4BD23_PYTIN1.230e-2267.27C3H1-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A8K1CH38_PYTOL1.420e-2165.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2EJN9_TRICV2.640e-2172.92Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A662WVL3_9STRA5.760e-2165.45C3H1-type domain-containing protein n=2 Tax=Nothop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64083contigH-elongata_contig64083:816..992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog2880.D7FXF1
KEGG koko:K12872
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
EggNOG free text desc.U6 snRNA binding
EggNOG OGsKOG0153@1,KOG0153@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.1141794-CDS-H-elongata_contig64083:815..9921622931027.1141794-CDS-H-elongata_contig64083:815..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64083 816..992 +
1691679667.5476265-CDS-H-elongata_contig64083:815..9921691679667.5476265-CDS-H-elongata_contig64083:815..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64083 816..992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64083.13998.1prot_H-elongata_contig64083.13998.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64083 816..992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64083.13998.1

>prot_H-elongata_contig64083.13998.1 ID=prot_H-elongata_contig64083.13998.1|Name=mRNA_H-elongata_contig64083.13998.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MGERGYQLKGPNNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKIC
ERPYTGEF*
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mRNA from alignment at H-elongata_contig64083:816..992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64083.13998.1 ID=mRNA_H-elongata_contig64083.13998.1|Name=mRNA_H-elongata_contig64083.13998.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig64083:816..992+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGAGCGAGGTTACCAGCTGAAGGGGCCAAACAACAAAAAGGCATG GGAAGAGTCTGACTTCCCAATCGTTTGCGAGACTTGCCTGGGCGATAATC CATACGTCAGGATGACCAAGGAGCCGCATGGCAAGGCGTGCAAAATCTGT GAGAGGCCATATACTGGTGAGTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig64083:816..992+

>mRNA_H-elongata_contig64083.13998.1 ID=mRNA_H-elongata_contig64083.13998.1|Name=mRNA_H-elongata_contig64083.13998.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig64083:816..992+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGAGCGAGGTTACCAGCTGAAGGGGCCAAACAACAAAAAGGCATG
GGAAGAGTCTGACTTCCCAATCGTTTGCGAGACTTGCCTGGGCGATAATC
CATACGTCAGGATGACCAAGGAGCCGCATGGCAAGGCGTGCAAAATCTGT
GAGAGGCCATATACTGGTGAGTTTTGAATGGGAGAGCGAGGTTACCAGCT
GAAGGGGCCAAACAACAAAAAGGCATGGGAAGAGTCTGACTTCCCAATCG
TTTGCGAGACTTGCCTGGGCGATAATCCATACGTCAGGATGACCAAGGAG
CCGCATGGCAAGGCGTGCAAAATCTGTGAGAGGCCATATACTGGTGAGTT
TTGA
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