mRNA_H-elongata_contig6407.13997.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6407.13997.1
Unique NamemRNA_H-elongata_contig6407.13997.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6407.13997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6407contigH-elongata_contig6407:3503..5837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1938
Cds size1497
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6407.13997.1prot_H-elongata_contig6407.13997.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6407 3509..5402 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.0141742-UTR-H-elongata_contig6407:3502..35081622931027.0141742-UTR-H-elongata_contig6407:3502..3508Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6407 3503..3508 -
1691679667.4844613-UTR-H-elongata_contig6407:3502..35081691679667.4844613-UTR-H-elongata_contig6407:3502..3508Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6407 3503..3508 -
1622931027.068181-UTR-H-elongata_contig6407:5402..58371622931027.068181-UTR-H-elongata_contig6407:5402..5837Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6407 5403..5837 -
1691679667.5360882-UTR-H-elongata_contig6407:5402..58371691679667.5360882-UTR-H-elongata_contig6407:5402..5837Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6407 5403..5837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.0376818-CDS-H-elongata_contig6407:3508..45031622931027.0376818-CDS-H-elongata_contig6407:3508..4503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 3509..4503 -
1691679667.5043015-CDS-H-elongata_contig6407:3508..45031691679667.5043015-CDS-H-elongata_contig6407:3508..4503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 3509..4503 -
1622931027.0510566-CDS-H-elongata_contig6407:4900..54021622931027.0510566-CDS-H-elongata_contig6407:4900..5402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 4901..5402 -
1691679667.51841-CDS-H-elongata_contig6407:4900..54021691679667.51841-CDS-H-elongata_contig6407:4900..5402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 4901..5402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6407.13997.1

>prot_H-elongata_contig6407.13997.1 ID=prot_H-elongata_contig6407.13997.1|Name=mRNA_H-elongata_contig6407.13997.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=499bp
MNPTSVMAVAFDSATPRLKRDSHQVVEMHHSQLSRGVTNQPRTPRDARAS
PVRQSSLKPEPPMTTEDSGAAVVVAREYESSCALARKRALLRVRLARQMS
ALAAAEATEREKGCRADRRQKRADKVAELVLKTSGVAAHGYRSLESCSRT
VQRSNGDVGERDGVNQQGKSPMAKEDSARLLPSRTTEWNKNKTPDCKEDE
ENEEAPRRPLNIEPVKLGIMGWQVGKGRKTGSRGKFRAHLEAEKSTAAET
KKHHAFSDYARTSGASSALVVRIDTFYSIPTRGSCLQGGGDDVSNGTDRP
SGEACAGVYLRIISGRLKHRTAAQHPECCKRGTCRGLGYRREGGTQRTRA
VRVSAVNADLAWVFNETVILRDAPERSPGRTRFPSKDNLQVLVYSDGGGQ
SAKGKDPSSSRDCRSAHVDSLGAAPWALVGMAILPLRGRRFASGDPVDDA
RDVVCGECTFSRSMVVSVQGVEGELPMGWVEMGVCGTTASGQSCRQKS*
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mRNA from alignment at H-elongata_contig6407:3503..5837-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6407.13997.1 ID=mRNA_H-elongata_contig6407.13997.1|Name=mRNA_H-elongata_contig6407.13997.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2335bp|location=Sequence derived from alignment at H-elongata_contig6407:3503..5837- (Himanthalia elongata Himel1 dioecious)
CTGCAGGCCGACCGCTCAGATGAGGAGGGGGAAAAAAAGTGTTATTTTAA
GCCAAGAGAGCCTGGCAGCTGCGCTGTGGATCACACCAAGGAAAGCGAAG
GTTACCATCGCCGTAGTCCAGCGAGGGTACACAGTCCAAATCGGTCTTTA
GGGCGCCTTCTCTCTGGAGAGGAAGTATGCGGGCGCGATTACGCGGACTC
AGATAGAAAGAATCAACAGGTGTGTAAGCGAGCTGAGCGGGACGCGGACG
CCGCCCTCGAATCTTCGTTTGTCAACTCTCTTGCAAACAATCATCAAAGA
AATGAACCCGTAGATTCTATCGAAGATCCTGACCTCCGCATCGAAGACAG
AAGCCTGTACGATCACCATTTCAAAACAACCTCCCCAGAGTCGGGTACAA
CGTGGTCATCGGAAAAATCCATAGAGATAGCGCTGATGAACCCAACATCC
GTGATGGCGGTTGCCTTCGACAGCGCTACCCCGAGACTAAAGAGAGACTC
GCATCAAGTTGTGGAAATGCATCACAGCCAACTCAGCCGGGGAGTTACGA
ATCAGCCGCGAACACCGAGGGACGCGAGAGCGTCACCCGTGCGACAATCC
TCACTAAAACCAGAGCCGCCGATGACCACCGAAGACTCCGGGGCTGCGGT
AGTGGTGGCGCGAGAGTACGAAAGCTCGTGCGCACTGGCAAGAAAACGTG
CTCTGCTACGCGTTCGTTTAGCACGGCAGATGTCGGCACTGGCTGCAGCT
GAAGCAACCGAGCGCGAGAAAGGATGTCGGGCCGATCGTCGACAAAAAAG
AGCCGACAAGGTAGCTGAACTTGTGCTGAAGACGTCCGGGGTTGCGGCCC
ATGGCTACCGTAGTCTAGAGAGTTGTTCACGTACTGTTCAGCGCAGCAAC
GGTGACGTGGGTGAACGCGATGGTGTCAATCAGCAAGGTATGAGTCGTCA
GCTTCCTCGTATGTCCATTCATCGGTCAGGGTAATGTTACCAATTCTCGG
TGGGCAAGAGGGGCGGGACTTTAATGGGTGGGATATCCTCTGAAGAGTTA
TACTCCCTAGATTCGATTATCCTTTGGTACAGGTGCGTCACATAGGTCTG
ACAGATGATGATGCGCACTTCCTTTCGATCCTTGACGACAGCCACGCCAC
GCCTCGGTGTGAAAACACGAACACTTTGCCTTACAGGCTTTTCCTCTGTG
CTGGATAAATTCGAGAAGTTTACCACGTATAGTATTGTTGAAGTCAAGGC
ATCCACCTCCAACTTCCCTGTCTCCTTGCATCCCCTGTGCCCACATATGT
CTGGTCACACAATCTAACCCACGGTTCCGACCAGGCAAGTCACCCATGGC
GAAGGAGGACTCGGCGAGACTGTTGCCATCGAGAACTACCGAATGGAACA
AAAATAAAACTCCCGACTGCAAAGAGGACGAAGAAAACGAAGAAGCACCT
CGGCGGCCGCTAAACATTGAACCAGTAAAGCTTGGAATAATGGGGTGGCA
GGTGGGAAAGGGACGCAAGACTGGTAGCAGGGGAAAATTTCGTGCGCACC
TCGAGGCAGAAAAATCGACAGCCGCGGAAACGAAAAAACACCACGCCTTT
TCCGATTACGCGAGAACATCCGGCGCATCATCCGCACTGGTTGTCAGGAT
TGACACCTTCTATTCTATTCCGACCCGGGGGTCGTGCCTACAAGGGGGGG
GTGATGATGTCAGCAACGGCACCGATCGCCCCAGTGGCGAGGCTTGCGCT
GGTGTGTATCTACGTATCATATCCGGTCGCTTGAAGCATCGTACGGCCGC
GCAACATCCGGAGTGCTGCAAGCGTGGAACGTGTCGCGGGCTGGGCTATA
GACGAGAAGGTGGCACACAGCGTACGCGCGCCGTCAGGGTGAGCGCTGTC
AACGCCGACCTCGCGTGGGTCTTCAACGAAACCGTGATACTGCGGGACGC
GCCGGAGAGATCGCCGGGGAGGACGAGGTTTCCCTCGAAAGATAATCTCC
AGGTGCTTGTCTACAGCGATGGCGGCGGCCAATCGGCTAAGGGCAAGGAT
CCTTCTAGTTCCCGGGACTGTCGATCGGCGCATGTTGATTCCTTGGGCGC
CGCGCCTTGGGCTCTCGTCGGCATGGCCATTTTGCCACTTCGTGGCCGAC
GTTTCGCATCCGGTGACCCGGTAGACGACGCTAGGGACGTAGTTTGTGGG
GAGTGCACATTTTCACGGTCGATGGTGGTTTCTGTTCAAGGTGTGGAGGG
GGAACTCCCGATGGGATGGGTCGAGATGGGTGTGTGTGGAACGACCGCGA
GCGGTCAGTCATGCCGACAAAAAAGTTAATCGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig6407:3503..5837-

>mRNA_H-elongata_contig6407.13997.1 ID=mRNA_H-elongata_contig6407.13997.1|Name=mRNA_H-elongata_contig6407.13997.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2994bp|location=Sequence derived from alignment at H-elongata_contig6407:3503..5837- (Himanthalia elongata Himel1 dioecious)
ATGAACCCAACATCCGTGATGGCGGTTGCCTTCGACAGCGCTACCCCGAG
ACTAAAGAGAGACTCGCATCAAGTTGTGGAAATGCATCACAGCCAACTCA
GCCGGGGAGTTACGAATCAGCCGCGAACACCGAGGGACGCGAGAGCGTCA
CCCGTGCGACAATCCTCACTAAAACCAGAGCCGCCGATGACCACCGAAGA
CTCCGGGGCTGCGGTAGTGGTGGCGCGAGAGTACGAAAGCTCGTGCGCAC
TGGCAAGAAAACGTGCTCTGCTACGCGTTCGTTTAGCACGGCAGATGTCG
GCACTGGCTGCAGCTGAAGCAACCGAGCGCGAGAAAGGATGTCGGGCCGA
TCGTCGACAAAAAAGAGCCGACAAGGTAGCTGAACTTGTGCTGAAGACGT
CCGGGGTTGCGGCCCATGGCTACCGTAGTCTAGAGAGTTGTTCACGTACT
GTTCAGCGCAGCAACGGTGACGTGGGTGAACGCGATGGTGTCAATCAGCA
AGATGAACCCAACATCCGTGATGGCGGTTGCCTTCGACAGCGCTACCCCG
AGACTAAAGAGAGACTCGCATCAAGTTGTGGAAATGCATCACAGCCAACT
CAGCCGGGGAGTTACGAATCAGCCGCGAACACCGAGGGACGCGAGAGCGT
CACCCGTGCGACAATCCTCACTAAAACCAGAGCCGCCGATGACCACCGAA
GACTCCGGGGCTGCGGTAGTGGTGGCGCGAGAGTACGAAAGCTCGTGCGC
ACTGGCAAGAAAACGTGCTCTGCTACGCGTTCGTTTAGCACGGCAGATGT
CGGCACTGGCTGCAGCTGAAGCAACCGAGCGCGAGAAAGGATGTCGGGCC
GATCGTCGACAAAAAAGAGCCGACAAGGTAGCTGAACTTGTGCTGAAGAC
GTCCGGGGTTGCGGCCCATGGCTACCGTAGTCTAGAGAGTTGTTCACGTA
CTGTTCAGCGCAGCAACGGTGACGTGGGTGAACGCGATGGTGTCAATCAG
CAAGGCAAGTCACCCATGGCGAAGGAGGACTCGGCGAGACTGTTGCCATC
GAGAACTACCGAATGGAACAAAAATAAAACTCCCGACTGCAAAGAGGACG
AAGAAAACGAAGAAGCACCTCGGCGGCCGCTAAACATTGAACCAGTAAAG
CTTGGAATAATGGGGTGGCAGGTGGGAAAGGGACGCAAGACTGGTAGCAG
GGGAAAATTTCGTGCGCACCTCGAGGCAGAAAAATCGACAGCCGCGGAAA
CGAAAAAACACCACGCCTTTTCCGATTACGCGAGAACATCCGGCGCATCA
TCCGCACTGGTTGTCAGGATTGACACCTTCTATTCTATTCCGACCCGGGG
GTCGTGCCTACAAGGGGGGGGTGATGATGTCAGCAACGGCACCGATCGCC
CCAGTGGCGAGGCTTGCGCTGGTGTGTATCTACGTATCATATCCGGTCGC
TTGAAGCATCGTACGGCCGCGCAACATCCGGAGTGCTGCAAGCGTGGAAC
GTGTCGCGGGCTGGGCTATAGACGAGAAGGTGGCACACAGCGTACGCGCG
CCGTCAGGGTGAGCGCTGTCAACGCCGACCTCGCGTGGGTCTTCAACGAA
ACCGTGATACTGCGGGACGCGCCGGAGAGATCGCCGGGGAGGACGAGGTT
TCCCTCGAAAGATAATCTCCAGGTGCTTGTCTACAGCGATGGCGGCGGCC
AATCGGCTAAGGGCAAGGATCCTTCTAGTTCCCGGGACTGTCGATCGGCG
CATGTTGATTCCTTGGGCGCCGCGCCTTGGGCTCTCGTCGGCATGGCCAT
TTTGCCACTTCGTGGCCGACGTTTCGCATCCGGTGACCCGGTAGACGACG
CTAGGGACGTAGTTTGTGGGGAGTGCACATTTTCACGGTCGATGGTGGTT
TCTGTTCAAGGTGTGGAGGGGGAACTCCCGATGGGATGGGTCGAGATGGG
TGTGTGTGGAACGACCGCGAGCGGTCAGTCATGCCGACAAAAAAGTTAAG
CAAGTCACCCATGGCGAAGGAGGACTCGGCGAGACTGTTGCCATCGAGAA
CTACCGAATGGAACAAAAATAAAACTCCCGACTGCAAAGAGGACGAAGAA
AACGAAGAAGCACCTCGGCGGCCGCTAAACATTGAACCAGTAAAGCTTGG
AATAATGGGGTGGCAGGTGGGAAAGGGACGCAAGACTGGTAGCAGGGGAA
AATTTCGTGCGCACCTCGAGGCAGAAAAATCGACAGCCGCGGAAACGAAA
AAACACCACGCCTTTTCCGATTACGCGAGAACATCCGGCGCATCATCCGC
ACTGGTTGTCAGGATTGACACCTTCTATTCTATTCCGACCCGGGGGTCGT
GCCTACAAGGGGGGGGTGATGATGTCAGCAACGGCACCGATCGCCCCAGT
GGCGAGGCTTGCGCTGGTGTGTATCTACGTATCATATCCGGTCGCTTGAA
GCATCGTACGGCCGCGCAACATCCGGAGTGCTGCAAGCGTGGAACGTGTC
GCGGGCTGGGCTATAGACGAGAAGGTGGCACACAGCGTACGCGCGCCGTC
AGGGTGAGCGCTGTCAACGCCGACCTCGCGTGGGTCTTCAACGAAACCGT
GATACTGCGGGACGCGCCGGAGAGATCGCCGGGGAGGACGAGGTTTCCCT
CGAAAGATAATCTCCAGGTGCTTGTCTACAGCGATGGCGGCGGCCAATCG
GCTAAGGGCAAGGATCCTTCTAGTTCCCGGGACTGTCGATCGGCGCATGT
TGATTCCTTGGGCGCCGCGCCTTGGGCTCTCGTCGGCATGGCCATTTTGC
CACTTCGTGGCCGACGTTTCGCATCCGGTGACCCGGTAGACGACGCTAGG
GACGTAGTTTGTGGGGAGTGCACATTTTCACGGTCGATGGTGGTTTCTGT
TCAAGGTGTGGAGGGGGAACTCCCGATGGGATGGGTCGAGATGGGTGTGT
GTGGAACGACCGCGAGCGGTCAGTCATGCCGACAAAAAAGTTAA
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