mRNA_H-elongata_contig6407.13996.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6407.13996.1
Unique NamemRNA_H-elongata_contig6407.13996.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Match: A0A6H5JUU8_9PHAE (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU8_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 7.020e-120
Identity = 174/211 (82.46%), Postives = 193/211 (91.47%), Query Frame = 1 
Query:    1 VHSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIVSELARGINVANTEIVRHLFPLVKAGLLRLRGRDGSDIRPTSCEDIPAWARARLNFYFSHKRTRVKINIVDHSRQPLKESKPSIETIQDRKMSVQAAICRVMKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGREPATQGYKYVA 633
            VHSGRKLEWLYHLGHGE+VTHCFDK YRIYSSTFQMG+LHQ+NDR E+ V ELARGINV++TEIVRHLFPL+KAGLLRL G DG+D++PTSC+DIP  ARARLN  FSHKRTRVKINIVDHSRQPLKE+KPS E IQDRKMSVQAAI RVMK+RKE++HRDLVVQVQEQL HLF+VD  FVKRNIEDLINKDYLHRLEG++P  +GYKYVA
Sbjct:  398 VHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDRTEIAVGELARGINVSDTEIVRHLFPLIKAGLLRLHGADGADLKPTSCDDIPPGARARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAISRVMKIRKEASHRDLVVQVQEQLRHLFDVDPPFVKRNIEDLINKDYLHRLEGKQPGKEGYKYVA 608
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BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Match: D7FUY8_ECTSI (Similar to Cullin-1 (CUL-1) isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY8_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 2.520e-117
Identity = 175/211 (82.94%), Postives = 193/211 (91.47%), Query Frame = 1 
Query:    1 VHSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIVSELARGINVANTEIVRHLFPLVKAGLLRLRGRDGSDIRPTSCEDIPAWARARLNFYFSHKRTRVKINIVDHSRQPLKESKPSIETIQDRKMSVQAAICRVMKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGREPATQGYKYVA 633
            VHSGRKLEWLYHLGHGE+VTHCFDK YRIYSSTFQMG+LHQ+ND  E+ VSELARGINV++TEIVRHLFPL+KAGLLRL G DG+D++PTSC+DIP  ARARLN  FSHKRTRVKINIVDHSRQPLKE+KPS E IQDRKMSVQAAI RVMK+RKE++HRDLVVQV+EQL HLF+VD  FVKRNIEDLINKDYLHRLEGREP  +GYKYVA
Sbjct:  626 VHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDSTEIAVSELARGINVSDTEIVRHLFPLIKAGLLRLHGADGADLKPTSCDDIPPGARARLNASFSHKRTRVKINIVDHSRQPLKEAKPSTEIIQDRKMSVQAAISRVMKIRKEASHRDLVVQVREQLRHLFDVDPPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 836
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BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Match: A0A835YSZ1_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ1_9STRA)

HSP 1 Score: 242 bits (617), Expect = 1.620e-71
Identity = 119/207 (57.49%), Postives = 155/207 (74.88%), Query Frame = 1 
Query:    1 VHSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIVSELARGINVANTEIVRHLFPLVKAGLLRLRGRDGSDIRPT---SCEDIPAWARARLNFYFSHKRTRVKINIVDHSRQPLKESKPSIETIQDRKMSVQAAICRVMKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGREPAT 612
            VHS RKLEWLYHLGHGE+   CFDK YR+YSSTFQMG+L+Q+N R+ + VS++A+GI ++ TE+ RHL+PL+KAGLL +R   G D+R     SC+DI       +N  F+ KR+R+KINIVDHSRQP+K   P +E I DRK SVQAA+CR+MK R+E AHRDL  +V+ QL HLF  D  F+K+ IE+LI+KDYL R+EG++  T
Sbjct:  651 VHSRRKLEWLYHLGHGEMSARCFDKPYRVYSSTFQMGVLYQFNARDAIGVSDIAKGIAISETELSRHLYPLIKAGLLVVRDAAGQDVRGAQMQSCDDIIPQHVIAINTAFTSKRSRIKINIVDHSRQPVKGDVPPVELISDRKASVQAAVCRIMKARRELAHRDLCTEVKAQLVHLFVPDVPFIKKCIEELIDKDYLGRVEGKDMYT 857
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BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Match: A0A6V1QSV4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QSV4_HETAK)

HSP 1 Score: 134 bits (337), Expect = 1.140e-32
Identity = 79/212 (37.26%), Postives = 118/212 (55.66%), Query Frame = 1 
Query:    1 VHSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIVSELARGINVANTEIVRHLFPLVKAGLLRLRGRDGSDIRPTSCEDIPAWARARLNFYFSHKRTRVKINIVDHSRQPLKESKPSI--ETIQDRKMSVQAAICRVMKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGREPATQGYKYV 630
             ++GR L++L+HLGH E+ T C+   Y + +ST+ M +L ++N  + + +  L   + +   E  R LFP++K  LL ++G +     PT  E +      R+N  F  KRTR+K+     +++  ++    I  E I DRKM  QAAI R MK R+   H DL+ +V  Q+  L+  D  FVK+ IEDLI+KDYL R EG      GY YV
Sbjct:  659 TYTGRCLKYLFHLGHAEISTRCYGGRYTLVASTYAMLLLLEFNHSDALSLGALCATLQMEPKETARQLFPMLKLKLLSVQGLEN----PTDHEALKDSDVIRVNPRFHSKRTRIKLPSPPENKKVAQQQNLEIREELIADRKMVTQAAIVRTMKARRAMGHNDLLAEVTRQVAKLYTADVKFVKQQIEDLIDKDYLERREG---GGDGYAYV 863
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BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Match: A0A0S7I659_9TELE (CUL1 (Fragment) n=3 Tax=Euteleostomi TaxID=117571 RepID=A0A0S7I659_9TELE)

HSP 1 Score: 124 bits (310), Expect = 2.940e-31
Identity = 76/214 (35.51%), Postives = 116/214 (54.21%), Query Frame = 1 
Query:    4 HSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIVSELARGINVANTEIVRHLFPLVKAGLLRLRGRDGS----DIRPTSCEDIPAWARARLNFYFSHKRTRVKINIVDHSRQPLKESKPSIETIQDRKMSVQAAICRVMKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGREPATQGYKYVA 633
            HSGRKL WLYHL  GELVT+CF   Y + +STFQM IL QYN  +   V +L     +    +V+ L  L+K+ LL L   + +    + +P +          +L   + +K+ RV IN+   + Q  ++        +DRK+ +QAAI R+MK+RK   H+ L+ +V  QL   F+     +K+ I+ LI K+YL R++G +     Y Y+A
Sbjct:   55 HSGRKLTWLYHLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDSYTVQQLTDSTQIKTDILVQVLQILLKSKLLVLEDENANVDEVEFKPDTV--------IKLFLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLAEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDT---YSYLA 257
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BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Match: A0A1A9ZY34_GLOPL (CULLIN_2 domain-containing protein n=1 Tax=Glossina pallidipes TaxID=7398 RepID=A0A1A9ZY34_GLOPL)

HSP 1 Score: 124 bits (310), Expect = 3.640e-31
Identity = 81/216 (37.50%), Postives = 121/216 (56.02%), Query Frame = 1 
Query:    4 HSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIVSELARGINVANTEIVRHLFPLVKAGLLRLRGRDGSDIRPTSCEDIPAWARARLNFYFSHKRTRVKINIVDHSRQPLK-ESKPSIETI-----QDRKMSVQAAICRVMKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGREPATQGYKYVA 633
            HSGRKL WLYH+  GELVT+CF   Y + +STFQM +L Q+ND+    V++L     +    +V+ L  L+K  LL     D S + P S  ++          Y  +K  +++INI     QPLK E K   E +     +DRK+ +QAAI R+MK+R++  H  L+ +V  QL   F+     +K+ I+ LI+K+YL R+EG++     Y Y+A
Sbjct:   69 HSGRKLNWLYHMCKGELVTNCFRNKYTLQASTFQMAVLLQFNDQIRYTVTQLLENTQIQLENLVQVLQILLKDKLLTCIDDDNS-LTPNSVMEL----------YVEYKSKKLRINI----NQPLKTELKVEQEAVHKHIEEDRKLLIQAAIVRIMKMRRKLNHAQLITEVLNQLSSRFKPKVPVIKKCIDILIDKEYLERMEGQKDT---YSYLA 266
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BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Match: A0A8C8DSE1_9TELE (CULLIN_2 domain-containing protein n=2 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C8DSE1_9TELE)

HSP 1 Score: 125 bits (313), Expect = 4.600e-31
Identity = 76/214 (35.51%), Postives = 116/214 (54.21%), Query Frame = 1 
Query:    4 HSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIVSELARGINVANTEIVRHLFPLVKAGLLRLRGRDGS----DIRPTSCEDIPAWARARLNFYFSHKRTRVKINIVDHSRQPLKESKPSIETIQDRKMSVQAAICRVMKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGREPATQGYKYVA 633
            HSGRKL WLYHL  GELVT+CF   Y + +STFQM IL QYN  +   V +L     +    +++ L  L+K+ LL L   + +    D +P +          +L   + +K+ RV IN+   + Q  ++        +DRK+ +QAAI R+MK+RK   H+ L+ +V  QL   F+     +K+ I+ LI K+YL R++G +     Y Y+A
Sbjct:  122 HSGRKLTWLYHLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDSYTVQQLTDSTQIKTDILIQVLQILLKSKLLVLEDENANVDEVDFKPDTV--------IKLFLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLAEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDT---YSYLA 324
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BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Match: A0A3N0XV75_ANAGA (Cullin-1 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0XV75_ANAGA)

HSP 1 Score: 125 bits (313), Expect = 1.500e-30
Identity = 78/214 (36.45%), Postives = 115/214 (53.74%), Query Frame = 1 
Query:    4 HSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIVSELARGINVANTEIVRHLFPLVKAGLLRLRGR----DGSDIRPTSCEDIPAWARARLNFYFSHKRTRVKINIVDHSRQPLKESKPSIETIQDRKMSVQAAICRVMKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGREPATQGYKYVA 633
            HSGRKL WLYHL  GELVT+CF   Y + +STFQM IL Q+N      V +LA    +    +V+ L  L+K+ LL L       D  D +P +          +L   + +K+ RV IN+   + Q  ++        +DRK+ +QAAI R+MK+RK   H+ L+ +V  QL   F+     +K+ I+ LI K+YL R++G +     Y Y+A
Sbjct:  188 HSGRKLTWLYHLSKGELVTNCFKNRYTLQASTFQMAILLQFNTENSYTVQQLADSTQIKTDILVQVLQILLKSKLLVLEDENANIDEMDFKPDTI--------IKLFLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLAEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDT---YSYLA 390
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BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Match: UPI0010A403BB (cullin-1 isoform X2 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=UPI0010A403BB)

HSP 1 Score: 127 bits (319), Expect = 2.780e-30
Identity = 78/210 (37.14%), Postives = 117/210 (55.71%), Query Frame = 1 
Query:    4 HSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIVSELARGINVANTEIVRHLFPLVKAGLLRLRGRDGSDIRPTSCEDIPAWARARLNFYFSHKRTRVKINIVDHSRQPLKESKPSIETIQDRKMSVQAAICRVMKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGREPATQGYKYVA 633
            HSGRKL WLYHL  GELVT+CF   Y + +STFQM IL QYN  +   V +L    ++    +V+ L  L+K+ LL L   + +DI      D   +   +L   + +K+ RV IN+   + Q  ++        +DRK+ +QAAI R+MK+RK   H+ L+ +V  QL   F+     +K+ I+ LI K+YL R++G +     Y Y+A
Sbjct:  559 HSGRKLTWLYHLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDSYTVQQLTDSTHIKLDVLVQVLQILLKSKLLVLED-EAADIDEV---DFRPYTLIKLFLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLAEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDT---YSYLA 761
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BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Match: UPI001E1E129B (cullin-1-like isoform X1 n=3 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E129B)

HSP 1 Score: 127 bits (319), Expect = 2.810e-30
Identity = 77/210 (36.67%), Postives = 120/210 (57.14%), Query Frame = 1 
Query:    4 HSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIVSELARGINVANTEIVRHLFPLVKAGLLRLRGRDGSDIRPTSCEDIPAWARARLNFYFSHKRTRVKINIVDHSRQPLKESKPSIETIQDRKMSVQAAICRVMKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGREPATQGYKYVA 633
            HSGRKL WLY +  GE+VT+CF   Y + +STFQM IL QYN  +   VS L     +    +V+ L  L+K+ LL +   D +D++PTS        +  L   + +K+ RV IN+   S   +++        +DRK+ +QAAI R+MK+RK+  H+ L+ +V  QL   F+   + +K+ I+ LI K+YL R++G++     Y Y+A
Sbjct:  577 HSGRKLGWLYQMSKGEIVTNCFKNRYTLQASTFQMAILLQYNTTDSHTVSSLLENTQIKMDTLVQVLQILLKSKLL-ITEDDENDLQPTS--------QLSLFLGYKNKKLRVNINVPMKSEVKVEQEATHKHIEEDRKLLIQAAIVRIMKMRKQLKHQQLLAEVLNQLSSRFKPRVNVIKKCIDILIEKEYLERVDGQKDT---YSYLA 774
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6407.13996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUU8_9PHAE7.020e-12082.46CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
D7FUY8_ECTSI2.520e-11782.94Similar to Cullin-1 (CUL-1) isoform 1 n=1 Tax=Ecto... [more]
A0A835YSZ1_9STRA1.620e-7157.49Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A6V1QSV4_HETAK1.140e-3237.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0S7I659_9TELE2.940e-3135.51CUL1 (Fragment) n=3 Tax=Euteleostomi TaxID=117571 ... [more]
A0A1A9ZY34_GLOPL3.640e-3137.50CULLIN_2 domain-containing protein n=1 Tax=Glossin... [more]
A0A8C8DSE1_9TELE4.600e-3135.51CULLIN_2 domain-containing protein n=2 Tax=Oryzias... [more]
A0A3N0XV75_ANAGA1.500e-3036.45Cullin-1 n=1 Tax=Anabarilius grahami TaxID=495550 ... [more]
UPI0010A403BB2.780e-3037.14cullin-1 isoform X2 n=1 Tax=Denticeps clupeoides T... [more]
UPI001E1E129B2.810e-3036.67cullin-1-like isoform X1 n=3 Tax=Mercenaria mercen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6407contigH-elongata_contig6407:240..2704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.5
Seed ortholog evalue1.6e-98
Seed eggNOG ortholog2880.D7FUY8
Preferred nameCUL1
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
GOsGO:0000003,GO:0000082,GO:0000086,GO:0000151,GO:0000152,GO:0000165,GO:0000209,GO:0000278,GO:0002119,GO:0002164,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006915,GO:0006935,GO:0006950,GO:0006952,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007346,GO:0007399,GO:0007568,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008283,GO:0008285,GO:0008340,GO:0008361,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010259,GO:0010265,GO:0010389,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010639,GO:0010646,GO:0010648,GO:0010720,GO:0010824,GO:0010826,GO:0010941,GO:0010942,GO:0010948,GO:0010972,GO:0012501,GO:0014041,GO:0014042,GO:0014066,GO:0014067,GO:0016043,GO:0016055,GO:0016310,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022008,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030003,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030174,GO:0030178,GO:0030587,GO:0030674,GO:0031098,GO:0031146,GO:0031156,GO:0031285,GO:0031286,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031461,GO:0031625,GO:0031647,GO:0031667,GO:0031974,GO:0031981,GO:0032006,GO:0032007,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032268,GO:0032270,GO:0032297,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032535,GO:0032886,GO:0032991,GO:0033043,GO:0033262,GO:0033554,GO:0034097,GO:0035556,GO:0036211,GO:0038061,GO:0040011,GO:0042127,GO:0042176,GO:0042221,GO:0042330,GO:0042592,GO:0042594,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043161,GO:0043170,GO:0043207,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043516,GO:0043518,GO:0043565,GO:0043632,GO:0043687,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0044843,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045666,GO:0045732,GO:0045786,GO:0045862,GO:0045930,GO:0045934,GO:0046605,GO:0046606,GO:0046626,GO:0046627,GO:0046916,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051403,GO:0051493,GO:0051494,GO:0051603,GO:0051607,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060090,GO:0060255,GO:0060284,GO:0060548,GO:0060828,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070498,GO:0070507,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0075260,GO:0075262,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090090,GO:0090329,GO:0090702,GO:0097159,GO:0097190,GO:0097193,GO:0098542,GO:0098771,GO:0099120,GO:0140096,GO:0198738,GO:1900076,GO:1900077,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901796,GO:1901797,GO:1901800,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902531,GO:1902532,GO:1902576,GO:1902749,GO:1902750,GO:1903047,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903429,GO:1903431,GO:1903463,GO:1903464,GO:1903466,GO:1903467,GO:1904799,GO:1904801,GO:1905114,GO:1990234,GO:1990452,GO:1990837,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001020,GO:2001021
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCullin repeat-like-containing domain
Ec32 orthologEc-01_008690.1
Exons5
Model size636
Cds size636
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6407.13996.1prot_H-elongata_contig6407.13996.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6407 240..2704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931026.866095-CDS-H-elongata_contig6407:239..3621622931026.866095-CDS-H-elongata_contig6407:239..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 240..362 +
1691679667.4100766-CDS-H-elongata_contig6407:239..3621691679667.4100766-CDS-H-elongata_contig6407:239..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 240..362 +
1622931026.8885949-CDS-H-elongata_contig6407:801..8911622931026.8885949-CDS-H-elongata_contig6407:801..891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 802..891 +
1691679667.4260097-CDS-H-elongata_contig6407:801..8911691679667.4260097-CDS-H-elongata_contig6407:801..891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 802..891 +
1622931026.908466-CDS-H-elongata_contig6407:1392..15901622931026.908466-CDS-H-elongata_contig6407:1392..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 1393..1590 +
1691679667.4351637-CDS-H-elongata_contig6407:1392..15901691679667.4351637-CDS-H-elongata_contig6407:1392..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 1393..1590 +
1622931026.9325614-CDS-H-elongata_contig6407:2067..21511622931026.9325614-CDS-H-elongata_contig6407:2067..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 2068..2151 +
1691679667.4492774-CDS-H-elongata_contig6407:2067..21511691679667.4492774-CDS-H-elongata_contig6407:2067..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 2068..2151 +
1622931026.9590092-CDS-H-elongata_contig6407:2563..27041622931026.9590092-CDS-H-elongata_contig6407:2563..2704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 2564..2704 +
1691679667.463928-CDS-H-elongata_contig6407:2563..27041691679667.463928-CDS-H-elongata_contig6407:2563..2704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6407 2564..2704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6407.13996.1

>prot_H-elongata_contig6407.13996.1 ID=prot_H-elongata_contig6407.13996.1|Name=mRNA_H-elongata_contig6407.13996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
VHSGRKLEWLYHLGHGELVTHCFDKAYRIYSSTFQMGILHQYNDREEVIV
SELARGINVANTEIVRHLFPLVKAGLLRLRGRDGSDIRPTSCEDIPAWAR
ARLNFYFSHKRTRVKINIVDHSRQPLKESKPSIETIQDRKMSVQAAICRV
MKVRKESAHRDLVVQVQEQLGHLFEVDSSFVKRNIEDLINKDYLHRLEGR
EPATQGYKYVA*
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mRNA from alignment at H-elongata_contig6407:240..2704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6407.13996.1 ID=mRNA_H-elongata_contig6407.13996.1|Name=mRNA_H-elongata_contig6407.13996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2465bp|location=Sequence derived from alignment at H-elongata_contig6407:240..2704+ (Himanthalia elongata Himel1 dioecious)
GTTCACTCTGGGCGCAAGCTGGAGTGGCTCTACCACCTGGGGCACGGGGA
GTTGGTGACGCACTGCTTCGACAAGGCGTACCGGATTTACTCGTCGACGT
TCCAGATGGGAATATTGCATCAGGTGTTTCGAACCGAAATAATGAGTGCT
CCACTCACCGCGTGTGTCCCTAAGAGACTTGGCCCTTGGGCATGTTTTTT
TTGCCGGGTACTGGGACAGAGGGGTTGTAAACGAGAGTGTGGGACTGGGA
CAAAGGGGTTGTAAACGAGAGTGTGGAACTGGGACAGAGGGCTGGCGCAT
TTGGGCGCATGATTTTCAGCAGAGAGCGAATTTATGTACGATGCGATGTG
CCTGCTTCATGAGCGCCCGGGGCCCCGCGTATTACCCGACCCAGCGCCGA
GGAAAGGATGTGTTAGAGTGGAAGCGAGCGCGCTTAAGTAGCACCAAGCA
TCGCTCGCTTCGTTTTTAACTCTCTTGTCGTTTCTTTCTCCCGGCCGGCC
GTGTGTCTTACGTCTCCGCTCTCCTACTGTGCCCGCCCGCCCTCCTCTCG
TGCCCAATAAAGTATAACGACCGCGAAGAGGTCATAGTGAGCGAGCTCGC
GCGCGGCATCAACGTGGCCAATACCGAGATCGTCCGCCATCTCTTCCCAC
TGGTGCGCGCATGAAATCCTTTTTGCGACAGTGAAGGGAGGGGAGGAATA
CCACACCTCAAAAAGGACAAAAACAGAAAGAGGGAATCCCCTATTCCTAC
TTTTAGTTTTTACTTCTGTACCGTATATAATTATGACTCTTGACTCACGG
CGCGAAGTGTATTACCCTCTCGCCACGCCTCTATTTTTTCCTGTGAGCGA
GTGTGTTTTATGTTTTTTTTTAATAAAATCTATTTAGGGTCTGTCTCCGT
TTGCACAGTTTACATCTATCTCGTCTTACAGCGGCCTTGCGCGCATCCGT
CCAACGAATCCTCGCCTCGGCGAAATAACTTTCAGCTTTAAAAAAAATGT
TTTCCCCAGTCTCAAGTTATCTCGTCGTTGTCTCCTATCCTTTGAACATG
CCACGTAAAAACACTAGAGTTGTGCCTTGTCCTGCCTTGCAATGTCGTTC
GCCTTGCCACGTCGCCCCGGGAAACGAACGGATTAACGTCCACCCATCCC
CAGGTCAAAGCGGGGCTGCTCCGCCTCCGCGGGCGAGACGGCTCCGACAT
TAGGCCGACGTCCTGCGAGGACATTCCTGCGTGGGCCAGGGCGCGGCTAA
ATTTTTATTTCAGCCACAAGCGCACTCGCGTCAAGATAAACATCGTAGAC
CACTCGCGGCAGCCCTTGAAGGAGTCCAAGCCAAGCATCGAGACTATCCA
GGTCCGTGATGGCTTCGGCGTCGAGGGTCGTTCACCTTGACACTCCTGAC
AGTATATCTTCTATAAAGTACGATTCCTAAAGGGCTGCTCTGTAAATGTT
TTTTTTTCGTGGTCCGTTTGCGGCAGCGGACAGAGACGTCCGCGGCGGAC
GACGTGTCGTACTACTGTCCCGTCCTGATCGCCGTATCATTTTTGGGGTC
AGGGATGATTTTTGCGAGATTGGCTTAAGCACGTGCTTTTGCGAGGGGCG
CCTTGTCCGCCTTCTGTACGGAGGCTCGAATCTTCGCTAGGCTCGTCCAG
GCACACTCGCGTCAAGATCAACATCTTGGAGTGCAGAGCTTCCCCTCCCT
ACCTCGCCCCACCCTTCATCTATATTTCTGCCTGTCGAACGGGCCCGATC
ATCCCGGTCTATTTTCTGCCGTACTTCGCCGCTCGCTTCTACCCCTCTGT
CTTTCTTTCTTTCCCCTCTTGTCTTCAGGATCGCAAAATGTCGGTTCAGG
CGGCTATCTGTCGGGTCATGAAAGTCCGCAAGGAATCTGCGCATCGTGAC
CTCGTTGTCCAGGTGCGCTCCGCTTTGCAGCCAAGCTTTATCTACATAAA
TATCGCCATACATTTATCCGCCCCGCTCTTCCCAATGCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCTCCCAGTCCACTCTACGGAGGCTTTCAAACGCCAAACAAGTCGTCA
ATCCCTCAATATTTCTAGTCAAATGTAGAAGAACTTGTCGCAGAAGCATA
TGAGCACGATATATATATATAACGAGCGTTTGGCTGTTCTATTTACAGTA
TACATTGTTCCACACCGCCGTGTTCTACGCAAGAGCGACGATCGTGGCTT
GCGTCCAAGAGTCAAGCGCGCTCGTGTCATGTTATATATGTCATAGATGG
CATGTTTGTTTGTTTTGTGACCAGGTTCAGGAACAGCTAGGGCACCTGTT
CGAGGTCGACTCGTCCTTCGTGAAGCGCAACATCGAGGACCTCATCAACA
AGGACTACCTACACCGCCTAGAGGGAAGGGAGCCAGCCACGCAGGGCTAC
AAGTACGTTGCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig6407:240..2704+

>mRNA_H-elongata_contig6407.13996.1 ID=mRNA_H-elongata_contig6407.13996.1|Name=mRNA_H-elongata_contig6407.13996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig6407:240..2704+ (Himanthalia elongata Himel1 dioecious)
GTTCACTCTGGGCGCAAGCTGGAGTGGCTCTACCACCTGGGGCACGGGGA
GTTGGTGACGCACTGCTTCGACAAGGCGTACCGGATTTACTCGTCGACGT
TCCAGATGGGAATATTGCATCAGGTTCACTCTGGGCGCAAGCTGGAGTGG
CTCTACCACCTGGGGCACGGGGAGTTGGTGACGCACTGCTTCGACAAGGC
GTACCGGATTTACTCGTCGACGTTCCAGATGGGAATATTGCATCAGTATA
ACGACCGCGAAGAGGTCATAGTGAGCGAGCTCGCGCGCGGCATCAACGTG
GCCAATACCGAGATCGTCCGCCATCTCTTCCCACTGTATAACGACCGCGA
AGAGGTCATAGTGAGCGAGCTCGCGCGCGGCATCAACGTGGCCAATACCG
AGATCGTCCGCCATCTCTTCCCACTGGTCAAAGCGGGGCTGCTCCGCCTC
CGCGGGCGAGACGGCTCCGACATTAGGCCGACGTCCTGCGAGGACATTCC
TGCGTGGGCCAGGGCGCGGCTAAATTTTTATTTCAGCCACAAGCGCACTC
GCGTCAAGATAAACATCGTAGACCACTCGCGGCAGCCCTTGAAGGAGTCC
AAGCCAAGCATCGAGACTATCCAGGTCAAAGCGGGGCTGCTCCGCCTCCG
CGGGCGAGACGGCTCCGACATTAGGCCGACGTCCTGCGAGGACATTCCTG
CGTGGGCCAGGGCGCGGCTAAATTTTTATTTCAGCCACAAGCGCACTCGC
GTCAAGATAAACATCGTAGACCACTCGCGGCAGCCCTTGAAGGAGTCCAA
GCCAAGCATCGAGACTATCCAGGATCGCAAAATGTCGGTTCAGGCGGCTA
TCTGTCGGGTCATGAAAGTCCGCAAGGAATCTGCGCATCGTGACCTCGTT
GTCCAGGATCGCAAAATGTCGGTTCAGGCGGCTATCTGTCGGGTCATGAA
AGTCCGCAAGGAATCTGCGCATCGTGACCTCGTTGTCCAGGTTCAGGAAC
AGCTAGGGCACCTGTTCGAGGTCGACTCGTCCTTCGTGAAGCGCAACATC
GAGGACCTCATCAACAAGGACTACCTACACCGCCTAGAGGGAAGGGAGCC
AGCCACGCAGGGCTACAAGTACGTTGCCTAGGTTCAGGAACAGCTAGGGC
ACCTGTTCGAGGTCGACTCGTCCTTCGTGAAGCGCAACATCGAGGACCTC
ATCAACAAGGACTACCTACACCGCCTAGAGGGAAGGGAGCCAGCCACGCA
GGGCTACAAGTACGTTGCCTAG
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