mRNA_H-elongata_contig6406.13995.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6406.13995.1
Unique NamemRNA_H-elongata_contig6406.13995.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6406.13995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6406contigH-elongata_contig6406:1059..4274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_003390.1
Exons4
Model size1919
Cds size1098
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6406.13995.1prot_H-elongata_contig6406.13995.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6406 1768..4162 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931026.724099-UTR-H-elongata_contig6406:1058..17671622931026.724099-UTR-H-elongata_contig6406:1058..1767Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6406 1059..1767 -
1691679667.3216784-UTR-H-elongata_contig6406:1058..17671691679667.3216784-UTR-H-elongata_contig6406:1058..1767Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6406 1059..1767 -
1622931026.816128-UTR-H-elongata_contig6406:4162..42741622931026.816128-UTR-H-elongata_contig6406:4162..4274Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6406 4163..4274 -
1691679667.3908932-UTR-H-elongata_contig6406:4162..42741691679667.3908932-UTR-H-elongata_contig6406:4162..4274Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6406 4163..4274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931026.7411304-CDS-H-elongata_contig6406:1767..19651622931026.7411304-CDS-H-elongata_contig6406:1767..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6406 1768..1965 -
1691679667.334007-CDS-H-elongata_contig6406:1767..19651691679667.334007-CDS-H-elongata_contig6406:1767..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6406 1768..1965 -
1622931026.7704291-CDS-H-elongata_contig6406:2251..24171622931026.7704291-CDS-H-elongata_contig6406:2251..2417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6406 2252..2417 -
1691679667.3584359-CDS-H-elongata_contig6406:2251..24171691679667.3584359-CDS-H-elongata_contig6406:2251..2417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6406 2252..2417 -
1622931026.7839572-CDS-H-elongata_contig6406:2866..29781622931026.7839572-CDS-H-elongata_contig6406:2866..2978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6406 2867..2978 -
1691679667.3708353-CDS-H-elongata_contig6406:2866..29781691679667.3708353-CDS-H-elongata_contig6406:2866..2978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6406 2867..2978 -
1622931026.8027549-CDS-H-elongata_contig6406:3540..41621622931026.8027549-CDS-H-elongata_contig6406:3540..4162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6406 3541..4162 -
1691679667.3809423-CDS-H-elongata_contig6406:3540..41621691679667.3809423-CDS-H-elongata_contig6406:3540..4162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6406 3541..4162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6406.13995.1

>prot_H-elongata_contig6406.13995.1 ID=prot_H-elongata_contig6406.13995.1|Name=mRNA_H-elongata_contig6406.13995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=366bp
MSVRDKIANFGGRSSSAPGKDLKGGSAPPSWARKTTTSSAHFSAASISAK
SAPTSAFSEGAGSGPVRKLNVPDVFSNTTKSVDPPGTSSSRDSLTTSTTS
LKELGDKRATAGNAASSSSQTIGGKPAVESDGNEFTGQSSGNPPSAHSNG
SPASGKTNNEGSSGSSNGRASLPLVSSSGNDGLDARSRSISGGRRSRMST
GSGESVSGATTRPKRDLLGLNSVGSPGDSAKGGASDFIVNTGRPRKTGQA
GPRKLQVAGKGKARISAEKQRAALGLDKSKDTEEVKVKESKAANQSKATS
RQSNVVPTTKASARASADYSSPASTTFKRPTPPLKSVVSGGVTTQKAGSS
FPSASALRSSGHNLW*
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mRNA from alignment at H-elongata_contig6406:1059..4274-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6406.13995.1 ID=mRNA_H-elongata_contig6406.13995.1|Name=mRNA_H-elongata_contig6406.13995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3216bp|location=Sequence derived from alignment at H-elongata_contig6406:1059..4274- (Himanthalia elongata Himel1 dioecious)
AGGTGACCAATCAATTTAAGTGACGGCCGAAGGATTTTCCCTTTGTTAAG
GGAGTCCGGAGCGGCCTGCTGCATTTCTAGAGGGCGTTACAGTCTGGAAT
TTTACGAAAAGGATGAGCGTACGCGACAAGATAGCTAACTTTGGAGGCAG
AAGCAGCTCTGCTCCGGGTAAGGATCTAAAAGGTGGATCAGCCCCCCCAT
CATGGGCAAGGAAAACTACCACATCTTCCGCACATTTTTCAGCGGCCTCG
ATTTCCGCCAAATCGGCGCCAACTTCGGCGTTTTCTGAAGGCGCCGGTTC
TGGGCCGGTAAGAAAGCTCAACGTTCCCGACGTGTTCAGTAACACCACCA
AATCGGTGGATCCTCCAGGAACTTCCTCTTCTCGAGATTCGTTGACCACC
TCCACGACATCTTTGAAGGAATTGGGAGACAAACGGGCTACCGCGGGGAA
TGCCGCTTCGTCGTCCAGTCAAACGATTGGGGGGAAACCCGCCGTGGAAT
CGGACGGGAATGAATTCACTGGACAATCGAGCGGAAATCCTCCCTCAGCC
CATTCGAATGGGAGCCCTGCTTCCGGGAAAACGAACAATGAAGGTTCGTC
CGGCTCATCAAACGGTCGTGCCTCGCTTCCACTTGTATCATCTTCGGGGA
ATGATGGACTCGACGCGAGGTCGCGATCCATATCTGGTGGTCGACGTTCA
AGGATGTCCACAGGATCTGGCGAGTCAGTGAGCGGTAAGTCATGGCTGCT
TCGTTTTTAAACCGTAAGCAGCGCGTCCGATCACGTCCCGGGGGGAACAT
AACCCATAACTCTTCTTGTGTGTATACTGCCTTCTCAGATGTTGTCCGCC
CCAGCAATAGAAATGAGTGTGCTTCGAAGAAATACGTTCAGTGCTGTAAA
AGAGAGACTTCCAGCCGCAAGTAAGGCATGCCAGAGGATTGCAGGGCTAT
GAACGCCGCGGGGAAGTTCGCACCTAGTCATACGGCGGTGTATCTTCATG
GGCAGTTACTTATCTAATTACCTCCACAATATATAAGGCGTGTAACCTCG
TTCCTGTCGCACGATAATATTTATTCGTCTCCAAAGCTGTCGAGTTCAAA
AAGCTGAACCAATTCTTCCCTTTCTCACTTTTTTTGCGGAAGAACCATGC
GAGCAGCACTCAGTACCCAATGATTTGGCTCCAACAAGTAATCAAACCGC
GCGAACCTGGATACACGTCATCCACGGACCACCCTCACTTAATCGGCTCT
GCAGCGATATTTACTATATGGTTTACTCCGTCGATTGATCCTGCAGGTGC
CACCACAAGGCCAAAGCGTGATTTGCTAGGTTTAAACTCAGTGGGAAGTC
CTGGGGATAGCGCTAAAGGCGGCGCCAGCGACTTTATAGTGAATACAGGA
CGCCCAAGGTATACAAGAAGAGACTGCTGCGTACGATAACAGCATGATGA
TGATACCTGTCCTTCCAGTACTGTAACTAGACAATTTTGGTCGTGCTCTT
GATAAAAGGTCGATGGTGGTTCCGTTGGATGATGCCTTTGGTCAGTACTC
GTAGCCCTAACCCTACATGGTCAGTCGGATGTTTTCTCATCCCCCAAACA
CGACTACTAGGTTACATCGCGCGACATATTTCTGGGCGAAGCGCCAGTCG
GTTAATCTATGACATTCGCACGAACAGATTGCTCCAAACGTTTGTCGCGG
AAAACGTGAAAACATTCCGTTTTCCAAGGCGCCCATATATGCATTTGAGG
GATAGGACCGAACAGCAGCGCCTATTCATAAAAGAACGCGCGCATTTTGA
ATACACGGCAACGCTGGATCTTACCGTCTTCCGCCAACACCACTACTCGG
TGCTCAGGAAAACAGGACAAGCTGGGCCAAGAAAGCTGCAGGTGGCTGGA
AAAGGGAAAGCAAGAATCTCGGCCGAGAAACAACGCGCGGCCTTAGGCCT
CGACAAGAGCAAGGACACTGAGGAGGTCAAGGTTAAGGAGAGCAAAGCCG
CCAACCAGTCCAAAGCGACGTCGGTAAGTTCCCATGTAATTTTGCCTTTT
CATTTTGCCTTGTTCGACTTGAGACAGGCGGTTATCATGACATCTTTGAC
ATTTTCGCACTGCGTTTGAATCCGATACGATCCATAGTTCTAGAGAAATT
GTTTAGCTATGCCGCTCTTGTATACTTTATGCGATGGTCACTGCTTACAT
ACAAGTTGACATACCCACATCACGGTCTCCTTTGTTTATTAACGGTTCAG
TGATCCGTTCTTTGCCGCATCCCTGCATCTCGGTGTATTGATCTCGTCTT
AACATCCAGAGGCAATCTAACGTTGTCCCGACGACGAAGGCGTCGGCCAG
AGCAAGCGCCGATTACAGCAGCCCGGCTTCGACGACCTTTAAGAGGCCGA
CTCCCCCATTGAAGAGTGTTGTGAGCGGGGGGGTTACAACTCAGAAGGCC
GGATCTTCTTTTCCTTCCGCCTCCGCACTCCGATCGTCCGGACACAACCT
CTGGTAACAATCATATTGCGAGAGACGACCCCGCCGTTGGGCTTGACTCT
TTTATGACAAGATCCGCGGAGCTTTCGTGTAGTAGGTAGAAGCTCAGTCG
AGATGTTCGGCCGTCATTCTTTGAATATCCTGTCGGTTTTTAAAGCTTTG
TCGCGTTATATAAAAGTAACCAACGTTTCGAAGATCCTTCAGCTCGTATG
TGTGGCGAACCTTTCATTTCTCGCTAAGCTAGAGATCAGGTCGACACACA
TTAGTCTTTTCACCAGACGCTGAAAGGGCTTCTTCGATATTGAGTTCGAA
TATGCGACAAGTTGGCGACAAGGGTTCCGGTGAGGCCATCAAACTACCGG
GCAGACTGTCGTATGTTGCCCTGCTCGATACGTTGCGACAAATTGCTGCT
GTCAAAGCACGGGGCACACTCTTTCGCTCGGCCAAGTTCCGTGGATATAC
GCACAGGTAAATGACAACCTGCCGGAGAGAAATTCGTCAATCCGGCTTGG
CGCCGAAGGAAAAGACAATAAAAACTTCTGTGGTGCGCGAAGTGTTGTGG
CGTCGATGGCTATGTGGAGGTCTGAGAACCGCTATGTGCCGTACCGTTTT
GTTTTGGAACCCTAGGTTGTCGGTGTTATGTTTTACACGTGGGGTACGAG
GAAGACTTTATCGGTGTTATGTTTTACACGTATGGTGCTACTCTCGGAGG
GAGGATTTTTGCGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig6406:1059..4274-

>mRNA_H-elongata_contig6406.13995.1 ID=mRNA_H-elongata_contig6406.13995.1|Name=mRNA_H-elongata_contig6406.13995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2196bp|location=Sequence derived from alignment at H-elongata_contig6406:1059..4274- (Himanthalia elongata Himel1 dioecious)
ATGAGCGTACGCGACAAGATAGCTAACTTTGGAGGCAGAAGCAGCTCTGC
TCCGGGTAAGGATCTAAAAGGTGGATCAGCCCCCCCATCATGGGCAAGGA
AAACTACCACATCTTCCGCACATTTTTCAGCGGCCTCGATTTCCGCCAAA
TCGGCGCCAACTTCGGCGTTTTCTGAAGGCGCCGGTTCTGGGCCGGTAAG
AAAGCTCAACGTTCCCGACGTGTTCAGTAACACCACCAAATCGGTGGATC
CTCCAGGAACTTCCTCTTCTCGAGATTCGTTGACCACCTCCACGACATCT
TTGAAGGAATTGGGAGACAAACGGGCTACCGCGGGGAATGCCGCTTCGTC
GTCCAGTCAAACGATTGGGGGGAAACCCGCCGTGGAATCGGACGGGAATG
AATTCACTGGACAATCGAGCGGAAATCCTCCCTCAGCCCATTCGAATGGG
AGCCCTGCTTCCGGGAAAACGAACAATGAAGGTTCGTCCGGCTCATCAAA
CGGTCGTGCCTCGCTTCCACTTGTATCATCTTCGGGGAATGATGGACTCG
ACGCGAGGTCGCGATCCATATCTGGTGGTCGACGTTCAAGGATGTCCACA
GGATCTGGCGAGTCAGTGAGCGATGAGCGTACGCGACAAGATAGCTAACT
TTGGAGGCAGAAGCAGCTCTGCTCCGGGTAAGGATCTAAAAGGTGGATCA
GCCCCCCCATCATGGGCAAGGAAAACTACCACATCTTCCGCACATTTTTC
AGCGGCCTCGATTTCCGCCAAATCGGCGCCAACTTCGGCGTTTTCTGAAG
GCGCCGGTTCTGGGCCGGTAAGAAAGCTCAACGTTCCCGACGTGTTCAGT
AACACCACCAAATCGGTGGATCCTCCAGGAACTTCCTCTTCTCGAGATTC
GTTGACCACCTCCACGACATCTTTGAAGGAATTGGGAGACAAACGGGCTA
CCGCGGGGAATGCCGCTTCGTCGTCCAGTCAAACGATTGGGGGGAAACCC
GCCGTGGAATCGGACGGGAATGAATTCACTGGACAATCGAGCGGAAATCC
TCCCTCAGCCCATTCGAATGGGAGCCCTGCTTCCGGGAAAACGAACAATG
AAGGTTCGTCCGGCTCATCAAACGGTCGTGCCTCGCTTCCACTTGTATCA
TCTTCGGGGAATGATGGACTCGACGCGAGGTCGCGATCCATATCTGGTGG
TCGACGTTCAAGGATGTCCACAGGATCTGGCGAGTCAGTGAGCGGTGCCA
CCACAAGGCCAAAGCGTGATTTGCTAGGTTTAAACTCAGTGGGAAGTCCT
GGGGATAGCGCTAAAGGCGGCGCCAGCGACTTTATAGTGAATACAGGACG
CCCAAGGTGCCACCACAAGGCCAAAGCGTGATTTGCTAGGTTTAAACTCA
GTGGGAAGTCCTGGGGATAGCGCTAAAGGCGGCGCCAGCGACTTTATAGT
GAATACAGGACGCCCAAGGAAAACAGGACAAGCTGGGCCAAGAAAGCTGC
AGGTGGCTGGAAAAGGGAAAGCAAGAATCTCGGCCGAGAAACAACGCGCG
GCCTTAGGCCTCGACAAGAGCAAGGACACTGAGGAGGTCAAGGTTAAGGA
GAGCAAAGCCGCCAACCAGTCCAAAGCGACGTCGGAAAACAGGACAAGCT
GGGCCAAGAAAGCTGCAGGTGGCTGGAAAAGGGAAAGCAAGAATCTCGGC
CGAGAAACAACGCGCGGCCTTAGGCCTCGACAAGAGCAAGGACACTGAGG
AGGTCAAGGTTAAGGAGAGCAAAGCCGCCAACCAGTCCAAAGCGACGTCG
AGGCAATCTAACGTTGTCCCGACGACGAAGGCGTCGGCCAGAGCAAGCGC
CGATTACAGCAGCCCGGCTTCGACGACCTTTAAGAGGCCGACTCCCCCAT
TGAAGAGTGTTGTGAGCGGGGGGGTTACAACTCAGAAGGCCGGATCTTCT
TTTCCTTCCGCCTCCGCACTCCGATCGTCCGGACACAACCTCTGGTAAAG
GCAATCTAACGTTGTCCCGACGACGAAGGCGTCGGCCAGAGCAAGCGCCG
ATTACAGCAGCCCGGCTTCGACGACCTTTAAGAGGCCGACTCCCCCATTG
AAGAGTGTTGTGAGCGGGGGGGTTACAACTCAGAAGGCCGGATCTTCTTT
TCCTTCCGCCTCCGCACTCCGATCGTCCGGACACAACCTCTGGTAA
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