mRNA_H-elongata_contig64017.13988.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64017.13988.1
Unique NamemRNA_H-elongata_contig64017.13988.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64017.13988.1 vs. uniprot
Match: D7FK56_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK56_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 3.100e-52
Identity = 127/193 (65.80%), Postives = 147/193 (76.17%), Query Frame = 1 
Query:    4 LVKELRDREEDALAEARSWRDRLETQQSDSDLQLDAAREEISELQAQVVELSGVEDELREAFKELRRYRKR--GVDEGH-----KDDREGVHSGDRGPGKKEDA--EGLRAVATVTAAAKAVEEELREQLEAKDEALRYVENELLGMKPLFEGKEALLRQELGSERDKLAKEAKEWKRRAEEAATRRSATEAS 555
            LVKELR RE DALAEA++WRDRL+ QQ++SD +LDAAREE+SEL+AQVV LSGVED+LRE FKELRRYRKR    D+G       DDR+G  S   G G+++ +    L AVA VTAAAKAVEEELR QLEAKD+ALRYVENELLGMK LFE KEA LRQELG ERDKLA E    ++R E+A   R+A E S
Sbjct: 1109 LVKELRLREGDALAEAQAWRDRLDAQQAESDQRLDAAREEVSELEAQVVALSGVEDQLREVFKELRRYRKRHESEDDGKGDGXXXDDRQGGESSRDGSGRRQRSCSTELTAVAAVTAAAKAVEEELRAQLEAKDQALRYVENELLGMKSLFESKEACLRQELGEERDKLAGEVGVLRQRLEQAEESRAAAEES 1301
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BLAST of mRNA_H-elongata_contig64017.13988.1 vs. uniprot
Match: A0A6H5LCW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCW9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.780e-43
Identity = 115/203 (56.65%), Postives = 132/203 (65.02%), Query Frame = 1 
Query:    4 LVKELRDREEDALAEARSWRDRLETQQSDSDLQLDAAREEISELQAQ------------VVELSGVEDELREAFKELRRYRKRGVDEGHKDDREGVHSGDRGPGKKEDAEGLRAVATVTAAAKAVEEELREQLEAKDEALR-------YVENELLGMKPLFEGKEALLRQELGSERDKLAKEAKEWKRRAEEAATRRSATEAS 555
            L+KELR RE DALAEA++WRDRL+ QQ++SD +LDAAREE+SEL+AQ            VV LSGVED+LRE  KELRRYRKR   E             +G         L AV  VTAAAKAVEEELR QLEAKD+ALR       YVENELLGMK +FE KEA LRQEL  ERDKLA E    ++R E+A   R+A E S
Sbjct:   28 LIKELRLREGDALAEAQAWRDRLDAQQAESDQRLDAAREEVSELEAQASRSIFVDRGLSVVALSGVEDQLREVCKELRRYRKRHESEXXXXXXXXXXXXRQGE--------LTAVGAVTAAAKAVEEELRAQLEAKDQALRRVAPLLSYVENELLGMKSMFERKEACLRQELSEERDKLAGEVGVLRQRLEQAEAGRAAAEES 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64017.13988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK56_ECTSI3.100e-5265.80Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5LCW9_9PHAE2.780e-4356.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64017contigH-elongata_contig64017:16..1639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue8.2e-46
Seed eggNOG ortholog2880.D7FK56
KEGG koko:K16475
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size558
Cds size558
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64017.13988.1prot_H-elongata_contig64017.13988.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64017 16..1639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.989116-CDS-H-elongata_contig64017:15..1591622931025.989116-CDS-H-elongata_contig64017:15..159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64017 16..159 +
1691679666.9832804-CDS-H-elongata_contig64017:15..1591691679666.9832804-CDS-H-elongata_contig64017:15..159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64017 16..159 +
1622931026.0051801-CDS-H-elongata_contig64017:427..4861622931026.0051801-CDS-H-elongata_contig64017:427..486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64017 428..486 +
1691679666.9976802-CDS-H-elongata_contig64017:427..4861691679666.9976802-CDS-H-elongata_contig64017:427..486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64017 428..486 +
1622931026.0177343-CDS-H-elongata_contig64017:849..10351622931026.0177343-CDS-H-elongata_contig64017:849..1035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64017 850..1035 +
1691679667.0088863-CDS-H-elongata_contig64017:849..10351691679667.0088863-CDS-H-elongata_contig64017:849..1035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64017 850..1035 +
1622931026.0315657-CDS-H-elongata_contig64017:1470..16391622931026.0315657-CDS-H-elongata_contig64017:1470..1639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64017 1471..1639 +
1691679667.019142-CDS-H-elongata_contig64017:1470..16391691679667.019142-CDS-H-elongata_contig64017:1470..1639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64017 1471..1639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64017.13988.1

>prot_H-elongata_contig64017.13988.1 ID=prot_H-elongata_contig64017.13988.1|Name=mRNA_H-elongata_contig64017.13988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
QLVKELRDREEDALAEARSWRDRLETQQSDSDLQLDAAREEISELQAQVV
ELSGVEDELREAFKELRRYRKRGVDEGHKDDREGVHSGDRGPGKKEDAEG
LRAVATVTAAAKAVEEELREQLEAKDEALRYVENELLGMKPLFEGKEALL
RQELGSERDKLAKEAKEWKRRAEEAATRRSATEAS*
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mRNA from alignment at H-elongata_contig64017:16..1639+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64017.13988.1 ID=mRNA_H-elongata_contig64017.13988.1|Name=mRNA_H-elongata_contig64017.13988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1624bp|location=Sequence derived from alignment at H-elongata_contig64017:16..1639+ (Himanthalia elongata Himel1 dioecious)
CAGCTGGTGAAGGAGCTACGCGACCGAGAGGAAGACGCGCTCGCCGAGGC
CCGCAGCTGGCGGGACCGTTTGGAGACGCAGCAGTCTGATTCCGACCTTC
AGCTAGATGCCGCCCGGGAAGAAATCTCTGAGCTTCAGGCCCAGGTGAGT
GATATTTTGGTAACTAGTTATAACAAATTATCTATCTATCTCAATTGTAA
GAAAGCACCTGTGTAATTAGTACGCTGCATGCCACACTGCAGCAACGCTG
CCCTTGAAATCTCCGAAAATGTCCATGCCTAGAAACGTTTGCCCACGGTT
TCGCCTCTTCCTGATCAAGAAGTGGTGCCATGATTGATTGTCTCTTGTAT
TGAATGCCAGACGTGGGAGTTCCATTCCATTTTTTGCGGTGGCGCGCTTG
TGTCTTTCACAGGTGGTGGAGCTGTCTGGTGTAGAGGATGAGCTTCGAGA
GGCGTTCAAAGAGCTGCGAAGGTGACGAAGCGGAGCGGTATGCAGGGAGT
TTAGTTCCTTTTGTGTGCCGCTAGCGCCAGAGAGGAAACAATGCTGCACC
AGACGCGGGTGGCGATAACGTAAGAGGTTACCACTGGTCGCTCCGGATCC
CCTGCAGCTTCTCTTGTCGAGCAGCCACGGTGATTGTAGACGGCTGACGG
ACGGACGGACGGACGGACGGTGAAAAATGGTGTAACACCTTTATCGTTTA
CAGCACCATGCCTTGTTTTATTGCTGTGCCTTCCCCGTTGTCCTCCGCCC
CCGCCTCTCGCCCTATCTCTCTCTTTCTCTCTCTCTGTCTTCCTGCCTAT
CTTATTATCTCTCTGGTCTTCTCGGCGGATCAAGGTACCGTAAGCGCGGC
GTGGACGAGGGTCACAAGGATGATCGAGAAGGCGTTCACTCTGGGGATAG
GGGACCGGGTAAAAAGGAAGACGCCGAGGGTCTGAGGGCGGTGGCGACCG
TGACTGCCGCCGCGAAGGCCGTGGAGGAAGAGCTCCGGGAACAACTCGAG
GCCAAGGACGAGGCTTTGAGGTGTGTAACGGCGATCCGCGTTTGTTTGCA
CTGAAAAGAGCCCCGCCACACCACGCTGCGCCTTGGTCTGCGTGGCCTTG
GGAGTTCGAGGGGGAGTATGTGGCATGTTTCATTTGTTGTGCCCGCTCTT
TCTCACTCTCGCTCTCTCGATGGAGCTGGAAGTGAAGACGACGAGGGATG
TTTTTTTGCGTCGTTTCTGGTCAACGGTCACTTCACCAAGCGGCGTGATG
CCGTGCGATTTCCAAGCTTTGCGAGCGTGCTCTCCAGTCGCGGAGCAAAC
ATCGAACGTCGAGGGGATGGGGGTTGGGGGGGGGCGAGAGTTTTGTAGTT
GTCTTTCCTAGGCGACCATTTCATCCCTCGCGCGCAATTTTTCTTTCTCT
TCTCGCCAAATTCCCTGTACCCCCAACCGTGGAACTCGCGCTGCCGTCGT
TCCAGATACGTTGAGAACGAGCTCCTGGGCATGAAACCTTTGTTCGAGGG
CAAGGAGGCCTTGCTCCGTCAGGAGCTAGGCAGCGAGCGGGACAAACTGG
CGAAAGAGGCTAAAGAGTGGAAACGGCGAGCTGAAGAAGCTGCAACCCGG
AGATCTGCCACAGAGGCAAGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig64017:16..1639+

>mRNA_H-elongata_contig64017.13988.1 ID=mRNA_H-elongata_contig64017.13988.1|Name=mRNA_H-elongata_contig64017.13988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig64017:16..1639+ (Himanthalia elongata Himel1 dioecious)
CAGCTGGTGAAGGAGCTACGCGACCGAGAGGAAGACGCGCTCGCCGAGGC
CCGCAGCTGGCGGGACCGTTTGGAGACGCAGCAGTCTGATTCCGACCTTC
AGCTAGATGCCGCCCGGGAAGAAATCTCTGAGCTTCAGGCCCAGCAGCTG
GTGAAGGAGCTACGCGACCGAGAGGAAGACGCGCTCGCCGAGGCCCGCAG
CTGGCGGGACCGTTTGGAGACGCAGCAGTCTGATTCCGACCTTCAGCTAG
ATGCCGCCCGGGAAGAAATCTCTGAGCTTCAGGCCCAGGTGGTGGAGCTG
TCTGGTGTAGAGGATGAGCTTCGAGAGGCGTTCAAAGAGCTGCGAAGGTG
GTGGAGCTGTCTGGTGTAGAGGATGAGCTTCGAGAGGCGTTCAAAGAGCT
GCGAAGGTACCGTAAGCGCGGCGTGGACGAGGGTCACAAGGATGATCGAG
AAGGCGTTCACTCTGGGGATAGGGGACCGGGTAAAAAGGAAGACGCCGAG
GGTCTGAGGGCGGTGGCGACCGTGACTGCCGCCGCGAAGGCCGTGGAGGA
AGAGCTCCGGGAACAACTCGAGGCCAAGGACGAGGCTTTGAGGTACCGTA
AGCGCGGCGTGGACGAGGGTCACAAGGATGATCGAGAAGGCGTTCACTCT
GGGGATAGGGGACCGGGTAAAAAGGAAGACGCCGAGGGTCTGAGGGCGGT
GGCGACCGTGACTGCCGCCGCGAAGGCCGTGGAGGAAGAGCTCCGGGAAC
AACTCGAGGCCAAGGACGAGGCTTTGAGATACGTTGAGAACGAGCTCCTG
GGCATGAAACCTTTGTTCGAGGGCAAGGAGGCCTTGCTCCGTCAGGAGCT
AGGCAGCGAGCGGGACAAACTGGCGAAAGAGGCTAAAGAGTGGAAACGGC
GAGCTGAAGAAGCTGCAACCCGGAGATCTGCCACAGAGGCAAGCTAGATA
CGTTGAGAACGAGCTCCTGGGCATGAAACCTTTGTTCGAGGGCAAGGAGG
CCTTGCTCCGTCAGGAGCTAGGCAGCGAGCGGGACAAACTGGCGAAAGAG
GCTAAAGAGTGGAAACGGCGAGCTGAAGAAGCTGCAACCCGGAGATCTGC
CACAGAGGCAAGCTAG
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