mRNA_H-elongata_contig640.13987.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig640.13987.1
Unique NamemRNA_H-elongata_contig640.13987.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig640.13987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig640contigH-elongata_contig640:7435..7898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.925144-CDS-H-elongata_contig640:7434..74731622931025.925144-CDS-H-elongata_contig640:7434..7473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig640 7435..7473 +
1691679666.9619033-CDS-H-elongata_contig640:7434..74731691679666.9619033-CDS-H-elongata_contig640:7434..7473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig640 7435..7473 +
1622931025.9439924-CDS-H-elongata_contig640:7681..78971622931025.9439924-CDS-H-elongata_contig640:7681..7897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig640 7682..7897 +
1691679666.9721296-CDS-H-elongata_contig640:7681..78971691679666.9721296-CDS-H-elongata_contig640:7681..7897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig640 7682..7897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig640.13987.1prot_H-elongata_contig640.13987.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig640 7435..7897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig640.13987.1

>prot_H-elongata_contig640.13987.1 ID=prot_H-elongata_contig640.13987.1|Name=mRNA_H-elongata_contig640.13987.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
GGRGRWGKGKSRRVNTIDVDEVGDGGQSSLPSSDEDSDVSGSVRFHSPRS
RRKKLTRPAGATSVAAVAAGSSIRKRGRRVQGGGG
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mRNA from alignment at H-elongata_contig640:7435..7898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig640.13987.1 ID=mRNA_H-elongata_contig640.13987.1|Name=mRNA_H-elongata_contig640.13987.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=464bp|location=Sequence derived from alignment at H-elongata_contig640:7435..7898+ (Himanthalia elongata Himel1 dioecious)
GGAGGAAGAGGCCGGTGGGGAAAAGGCAAATCACGACGGGTGAGCGGTGA
AGGGTGAGACATTGACCCACCGGGCCCGTTACAGCCGTATAGTCAGTGCC
CGTGTTACCTTTTTGTACACGACGTTGCATTTTACTAGAGTTAGGGTTGG
GTTTGGGGAACTGCCCAAGTGACACTCTTCGTTAGGGTTAGGGTTAGGGT
TATTCGATGATTCGATGGTCTGAAGATGGATATGTCCGTATAAACAGGTC
AATACGATAGACGTGGACGAGGTCGGAGATGGCGGGCAATCGTCGCTGCC
CTCCAGCGACGAGGACAGCGATGTGAGCGGGAGCGTTCGCTTTCACAGTC
CTCGCTCTCGTCGGAAGAAGCTCACTCGCCCGGCGGGTGCTACGAGCGTC
GCCGCTGTCGCGGCTGGGAGTTCGATTCGCAAGCGAGGCCGCAGGGTACA
AGGTGGAGGGGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig640:7435..7898+

>mRNA_H-elongata_contig640.13987.1 ID=mRNA_H-elongata_contig640.13987.1|Name=mRNA_H-elongata_contig640.13987.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig640:7435..7898+ (Himanthalia elongata Himel1 dioecious)
GGAGGAAGAGGCCGGTGGGGAAAAGGCAAATCACGACGGGGAGGAAGAGG
CCGGTGGGGAAAAGGCAAATCACGACGGGTCAATACGATAGACGTGGACG
AGGTCGGAGATGGCGGGCAATCGTCGCTGCCCTCCAGCGACGAGGACAGC
GATGTGAGCGGGAGCGTTCGCTTTCACAGTCCTCGCTCTCGTCGGAAGAA
GCTCACTCGCCCGGCGGGTGCTACGAGCGTCGCCGCTGTCGCGGCTGGGA
GTTCGATTCGCAAGCGAGGCCGCAGGGTACAAGGTGGAGGGGGGGTCAAT
ACGATAGACGTGGACGAGGTCGGAGATGGCGGGCAATCGTCGCTGCCCTC
CAGCGACGAGGACAGCGATGTGAGCGGGAGCGTTCGCTTTCACAGTCCTC
GCTCTCGTCGGAAGAAGCTCACTCGCCCGGCGGGTGCTACGAGCGTCGCC
GCTGTCGCGGCTGGGAGTTCGATTCGCAAGCGAGGCCGCAGGGTACAAGG
TGGAGGGGGG
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