mRNA_H-elongata_contig63995.13985.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Match: D8LJ75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ75_ECTSI) HSP 1 Score: 307 bits (787), Expect = 4.330e-101 Identity = 160/209 (76.56%), Postives = 182/209 (87.08%), Query Frame = 1
Query: 19 CTAIAVVARFPDDEDEEAFQAYREGKGVDAVGGAEAIISHVMTQKLKVPCAHAPASLPMEVDGSVSPRACAEELGYTFLPCVLSNLHRAPSIITSRDHPKSHWALWAEDVDAVVAPSTAFGGAGVLSLAQQATTLLIAVKENTTIMRASAKDLLGGGTSANHCVTVSSYLEALGVLAAHKAGVNPAALTNSIAGVRSLLPPVTAAGAEG 645
CTAIAVVARFPDDEDEEA QAYREG+GVDAVGGAEAIISHVM+QKLKVPCAHAPA P++VD SVSPRACAEELGYTFLPCVLSNLHRAPSIITSR+HP++ ALWA+ VDAVVAP++AFGGAGVLSLA+QATTLLIAV++N T+M+A A+ LLG + ++ CVTVSSYLEA+GVLA HKAGVNP LT + +R L PP AA EG
Sbjct: 174 CTAIAVVARFPDDEDEEALQAYREGQGVDAVGGAEAIISHVMSQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHRAPSIITSREHPRAGEALWADAVDAVVAPASAFGGAGVLSLAEQATTLLIAVEDNATVMKAGARALLGSSSVSDRCVTVSSYLEAVGVLACHKAGVNPTCLTPEVPAIRRL-PPAPAAATEG 381
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Match: A0A6H5JF81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF81_9PHAE) HSP 1 Score: 302 bits (773), Expect = 1.210e-97 Identity = 159/210 (75.71%), Postives = 182/210 (86.67%), Query Frame = 1
Query: 19 CTAIAVVARFPDDEDEEAFQAYREGKGVDAVGGAEAIISHVMTQKLKVPCAHAPASLPMEVDGSVSPRACAEELGYTFLPCVLSNLHRAPSIITSRDHPKSHWALWAEDVDAVVAPSTAFGGAGVLSLAQQATTLLIAVKENTTIMRASAKDLLGGGTS-ANHCVTVSSYLEALGVLAAHKAGVNPAALTNSIAGVRSLLPPVTAAGAEG 645
CTAIAVVARFPDDEDEEA QAYREG+GVDAVGGAEAIISHVM+QKLKVPCAHAPA P++VD SVSPRACAEELGYTFLPCVLSNLHRAPSIITSR+HP++ ALWA+ VDAVVAP++AFGGAGVLSLA+QATTLLIAV++N T+M+A A +LG +S ++ CVTVSSYLEA+GVLA HKAGVNP LT + +R + PP AA EG
Sbjct: 277 CTAIAVVARFPDDEDEEALQAYREGQGVDAVGGAEAIISHVMSQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHRAPSIITSREHPRAGEALWADAVDAVVAPASAFGGAGVLSLAEQATTLLIAVEDNATVMKADAGAMLGSSSSVSDRCVTVSSYLEAVGVLACHKAGVNPTCLTPEVPAIRRM-PPAPAAATEG 485
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Match: A0A835ZBV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV7_9STRA) HSP 1 Score: 250 bits (639), Expect = 1.930e-79 Identity = 132/198 (66.67%), Postives = 157/198 (79.29%), Query Frame = 1
Query: 19 CTAIAVVARFPDDEDEEAFQAYREGKGVDAVGGAEAIISHVMTQKLKVPCAHAPASLPMEVDGSVSPRACAEELGYTFLPCVLSNLHRAPSIITSRDHPKSHWALWAEDVDAVVAPSTAFGGAGVLSLAQQATTLLIAVKENTTIMRASAKDLLGGGTSANHCVTVSSYLEALGVLAAHKAGVNPAALTNSIAGVRSL 612
CTAIAVVARFPDDEDE+ QAYREG+GVDAVGGAEAIISH++ Q+L VP AHAP P++VD SVSPRACAEELGYTFL CVL+NLHRAP+ +TSR ++ ALWAEDVDA +AP+TA GG G LSL+ Q+TTLL+ V++N T+MRAS DL G VTV SYLEA+G+LAAHKAG+NPA LT + +R L
Sbjct: 162 CTAIAVVARFPDDEDEDMLQAYREGQGVDAVGGAEAIISHLIVQELGVPAAHAPGLPPIDVDESVSPRACAEELGYTFLSCVLANLHRAPACVTSRGDARAAHALWAEDVDAFIAPATAMGGPGALSLSGQSTTLLVGVEDNATVMRASGADLRMHGH-----VTVRSYLEAVGLLAAHKAGINPACLTPDVPPIRRL 354
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Match: A0A4D9CT42_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT42_9STRA) HSP 1 Score: 212 bits (539), Expect = 2.930e-63 Identity = 119/212 (56.13%), Postives = 146/212 (68.87%), Query Frame = 1
Query: 19 CTAIAVVARFPDDE-DEEAFQAYREGKGVDAVGGAEAIISHVMTQKLKVPCAHAPASLPMEVDGSVSPRACAEELGYTFLPCVLSNLHRAPSIIT----------SRDHPKSHWALWAEDVDAVVAPSTAFGGAGVLSL-----AQQATTLLIAVKENTTIMRASAKDLLGGGTSANHCVTVSSYLEALGVLAAHKAGVNPAALTNSIAGVR 606
CTA+AVVARFP++E DE A QAYREG GVD VGGAEA+ISH++T +L VPCAHAP P+E D +SP+AC EELGYTFLPCVL+NL RAP +++ +R LW EDV AVVAP++A GG VL L A TLL+AV+EN T+MRA +DL +A V SYLEA+G+LAAH+AG+N AALT S+ GVR
Sbjct: 240 CTALAVVARFPEEEEDEAALQAYREGHGVDCVGGAEAVISHLVTAELGVPCAHAPGLPPLEADAGISPKACGEELGYTFLPCVLANLQRAPVLVSPHLEGRNQGRNRGREGDGRTLWREDVSAVVAPASAVGGPAVLGLLGGERASGQATLLVAVEENETLMRAWPEDLFPRQLAAGRVVRARSYLEAMGILAAHRAGMNLAALTPSVPGVR 451
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Match: A0A7S2DKW2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKW2_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.470e-61 Identity = 113/207 (54.59%), Postives = 144/207 (69.57%), Query Frame = 1
Query: 19 CTAIAVVARFPDDEDEEAFQAYREGKGVDAVGGAEAIISHVMTQKLKVPCAHAPASLPMEVDGSVSPRACAEELGYTFLPCVLSNLHRAPSII--------TSRDHPKSHWALWAEDVDAVVAPSTAFGGAGVLSLAQQATTLLIAVKENTTIMRASAKDLLGGGTSANHCVTVSSYLEALGVLAAHKAGVNPAALTNSIAGVRSLL 615
C+A+A+VA+FPDDED AYR G GVDAVGGAEAIISH++T +L VPCAHAP+ P++VD SVSPRACAEELGYTFLPCVL+NLHRAP I+ + H L A VDAVV P +A GG+ VLS A + LL+ V+EN T+M A+ ++LG + V SY+EA+G+LAAH+AG+ P ALT+ + +R LL
Sbjct: 39 CSALALVAQFPDDEDPAMLAAYRAGAGVDAVGGAEAIISHLVTMELGVPCAHAPSLEPLDVDESVSPRACAEELGYTFLPCVLANLHRAPRIVRGLKKGQENDDGRLQQHGTLLASHVDAVVVPLSACGGSAVLSFASRPDVLLVVVEENETLMGATP-EVLGLDKAGCQLRRVRSYMEAVGLLAAHRAGILPDALTSQMPPMRRLL 244
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Match: R1E2S3_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2S3_EMIHU) HSP 1 Score: 199 bits (506), Expect = 5.890e-59 Identity = 112/198 (56.57%), Postives = 144/198 (72.73%), Query Frame = 1
Query: 19 CTAIAVVARFPDDEDEEAFQAYREGKGVDAVGGAEAIISHVMTQKLKVPCAHAPASLPMEVDGSVSPRACAEELGYTFLPCVLSNLHRAPSIITSRDHPKSHWALWAEDVDAVVAPSTAFGGAGVLSLAQQATTLLIAVKENTTIMRASAKDLLGGGTSANHCVTVSSYLEALGVLAAHKAGVNPAALTNSIAGVRSL 612
CTAIAVVARFPDDEDEE AYR G GVDA+GGAEAIISH++T++L++PCAHAPA + ++ ++PRACAEELG+TFLPCVL+NL RAPS++ + P + +DA+V P+ A GGA VL+LA TL++ V+ENT M S + LGGG V V SY+EA+G+LAAHKAGVNPA LT ++A + L
Sbjct: 178 CTAIAVVARFPDDEDEEMLAAYRAGDGVDAIGGAEAIISHLITKELRLPCAHAPALPALGLEPGLAPRACAEELGHTFLPCVLANLARAPSLLDGSERPLP--GDLRDSLDALVVPADACGGAAVLALAAS-DTLVVGVEENTCAMAVSP-ERLGGGV-----VRVRSYMEAIGLLAAHKAGVNPACLTPTVAPIADL 366
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Match: A0A1E5QEU4_9CYAN (Uncharacterized protein n=2 Tax=unclassified Desertifilum TaxID=2621682 RepID=A0A1E5QEU4_9CYAN) HSP 1 Score: 197 bits (501), Expect = 1.080e-58 Identity = 109/199 (54.77%), Postives = 142/199 (71.36%), Query Frame = 1
Query: 16 RCTAIAVVARFPDDEDEEAFQAYREGKGVDAVGGAEAIISHVMTQKLKVPCAHAPASLPMEVDGSVSPRACAEELGYTFLPCVLSNLHRAPSIITSRDHPKSHWALWAEDVDAVVAPSTAFGGAGVLSLAQQATTLLIAVKENTTIMRASAKDLLGGGTSANHCVTVSSYLEALGVLAAHKAGVNPAALTNSIAGVRSL 612
+ TAIAVVARFPDD E Q YR G+GVD +GGAEA+ISH++ ++ ++PCAHAPA LP+ +D +SPR+ AEELGYTFLPCVL L RAP +T D P + LW VDAVV P+TA GG+G+LSL+Q + IAV +N T MR+ + L G A + V+SYLEALGVL AH+AG++P+AL+ I+ +RSL
Sbjct: 161 QATAIAVVARFPDDSGSETLQNYRYGQGVDPIGGAEAVISHLVVRQFRIPCAHAPALLPLPLDPDISPRSAAEELGYTFLPCVLVGLSRAPQFVTLEDRPLAG-DLWVNQVDAVVVPATACGGSGILSLSQTPAQI-IAVGDNQTAMRSPPEPL---GIKA---LRVNSYLEALGVLVAHRAGIHPSALSPKISSLRSL 351
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Match: W7TGI0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGI0_9STRA) HSP 1 Score: 205 bits (521), Expect = 5.690e-58 Identity = 115/211 (54.50%), Postives = 143/211 (67.77%), Query Frame = 1
Query: 19 CTAIAVVARFPDDE-DEEAFQAYREGKGVDAVGGAEAIISHVMTQKLKVPCAHAPASLPMEVDGSVSPRACAEELGYTFLPCVLSNLHRAPSIIT----------SRDHPKSHWALWAEDVDAVVAPSTAFGGAGVLSL-----AQQATTLLIAVKENTTIMRASAKDLLGGGTSANHCVTVSSYLEALGVLAAHKAGVNPAALTNSIAGV 603
CTA+AVVARFP++E DE A QAYREG GVD VGGAEA+ISH++T +L VPCAHAP P+ D +SP+AC EELGYTFLPCVL+NL RAP +++ +R LW EDV AVVAP++A GG VL L A TLL+AV+EN T+MR +DL +A V SYLEA+G+LAAH+AG+N AALT S+ G+
Sbjct: 240 CTALAVVARFPEEEEDEAALQAYREGHGVDCVGGAEAVISHLVTAELGVPCAHAPGLPPLAADAGISPKACGEELGYTFLPCVLANLQRAPVLVSPHLEGRNRGRNRGREGDGRTLWREDVSAVVAPASAVGGPAVLGLLGGERASGQATLLVAVEENETLMRVWPEDLFPRQLAAGRVVRARSYLEAMGILAAHRAGLNLAALTPSVPGL 450
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Match: A0A7S3Y7S8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7S8_HETAK) HSP 1 Score: 195 bits (496), Expect = 4.510e-57 Identity = 108/195 (55.38%), Postives = 136/195 (69.74%), Query Frame = 1
Query: 19 CTAIAVVARFPDDEDEEAFQAYREGKGVDAVGGAEAIISHVMTQKLKVPCAHAPASLPMEVDGSVSPRACAEELGYTFLPCVLSNLHRAPSIITSRDHPKSHW----ALWAEDVDAVVAPSTAFGGAGVLSLAQQATTLLIAVKENTTIMRASAKDLLGGGTSANHCVTVSSYLEALGVLAAHKAGVNPAALTNS 591
CTAIA+VARFP+DED QAYREG GVDAVGGAEAI+SH++ Q+LK+PCAHAP P++ D +V+PRACAEELG+TFLPCVL+NL RAP ++ + S L+A D+DA V P +A GG L+L L++AV+EN T MR S DL + V V SY EALGV+AAH+AG+N A+LT S
Sbjct: 235 CTAIALVARFPEDEDPAMLQAYREGGGVDAVGGAEAILSHLVVQELKIPCAHAPGLDPLDADPAVAPRACAEELGHTFLPCVLANLRRAPRLLPAPPEALSAREAAAGLFAGDIDAAVLPLSACGGPAALALGATPGALVVAVEENATDMRVSPADL-----GFENAVVVRSYFEALGVVAAHRAGINGASLTAS 424
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Match: UPI00034CEBD6 (DUF3326 domain-containing protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI00034CEBD6) HSP 1 Score: 192 bits (489), Expect = 8.600e-57 Identity = 106/204 (51.96%), Postives = 140/204 (68.63%), Query Frame = 1
Query: 1 MSRHHRCTAIAVVARFPDDEDEEAFQAYREGKGVDAVGGAEAIISHVMTQKLKVPCAHAPASLPMEVDGSVSPRACAEELGYTFLPCVLSNLHRAPSIITSRDHPKSHWALWAEDVDAVVAPSTAFGGAGVLSLAQQATTLLIAVKENTTIMRASAKDLLGGGTSANHCVTVSSYLEALGVLAAHKAGVNPAALTNSIAGVRSL 612
+ R A+AVVARFPDD D EA Q YR G+GVD + GAEA+ISH++ + L +PCAHAPA P+ +D ++SPR+ AEELG+TFLPCVL+ L RAP IT++ +WAE VDAVV P+ AFGG+ VLS +Q L IAV EN T M+ + + G A + V+SYLEALGV+ AH+AG++PAAL+ S+ +R L
Sbjct: 156 LVRQAGAEALAVVARFPDDPDSEALQRYRHGQGVDPLAGAEAVISHLVVRTLAIPCAHAPALSPLPLDANLSPRSAAEELGHTFLPCVLAGLSRAPQFITTKSEICQPADVWAEQVDAVVVPAAAFGGSAVLSFSQMPV-LAIAVSENQTTMQVPPEKV---GVKA---IRVNSYLEALGVMVAHRAGISPAALSPSVPSLRCL 352 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63995.13985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63995.13985.1 >prot_H-elongata_contig63995.13985.1 ID=prot_H-elongata_contig63995.13985.1|Name=mRNA_H-elongata_contig63995.13985.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp MSRHHRCTAIAVVARFPDDEDEEAFQAYREGKGVDAVGGAEAIISHVMTQback to top mRNA from alignment at H-elongata_contig63995:289..2420+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63995.13985.1 ID=mRNA_H-elongata_contig63995.13985.1|Name=mRNA_H-elongata_contig63995.13985.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2132bp|location=Sequence derived from alignment at H-elongata_contig63995:289..2420+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63995:289..2420+ >mRNA_H-elongata_contig63995.13985.1 ID=mRNA_H-elongata_contig63995.13985.1|Name=mRNA_H-elongata_contig63995.13985.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig63995:289..2420+ (Himanthalia elongata Himel1 dioecious)back to top |