mRNA_H-elongata_contig63941.13978.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63941.13978.1
Unique NamemRNA_H-elongata_contig63941.13978.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Match: D8LBE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBE4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 9.640e-30
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    4 GGAHNSIGPQCRVFVRGSTFRLPEDTTISIVMIGPGTGVA-----LQEMSWQKSEGSEVGRSVLYFRCRRRNCDCIYK-ELEAFKADGTLDMLRVAFSRE 285
            G   +  G +CRVFVR STFRLP D++I I+MIGPGTGVA     LQE +WQK +G  VGR+VLYF CR R+ D IY+ ELEA++ADGTLD LR+AFSRE
Sbjct:  470 GATIDGSGSKCRVFVRESTFRLPADSSIPIIMIGPGTGVAPMRALLQERAWQKEQGLSVGRNVLYFGCRCRDQDYIYRDELEAYQADGTLDSLRLAFSRE 569
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BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Match: D8LBE3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBE3_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 9.900e-30
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    4 GGAHNSIGPQCRVFVRGSTFRLPEDTTISIVMIGPGTGVA-----LQEMSWQKSEGSEVGRSVLYFRCRRRNCDCIYK-ELEAFKADGTLDMLRVAFSRE 285
            G   +  G +CRVFVR STFRLP D++I I+MIGPGTGVA     LQE +WQK +G  VGR+VLYF CR R+ D IY+ ELEA++ADGTLD LR+AFSRE
Sbjct:  483 GATIDGSGSKCRVFVRESTFRLPADSSIPIIMIGPGTGVAPMRALLQERAWQKEQGLSVGRNVLYFGCRCRDQDYIYRDELEAYQADGTLDSLRLAFSRE 582
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BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Match: A0A7S2RX15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RX15_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.240e-23
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:   28 PQCRVFVRGSTFRLPEDTTISIVMIGPGTGVA-----LQEMSWQKSEGSEVGRSVLYFRCRRRNCDCIYKE-LEAFKADGTLDMLRVAFSRE 285
            PQC+VFVR S+FRLP D    I++IGPGTG+A     LQE S+QKS G  VG +VLYF C+ R+ D +Y+E LE F+A+G L  L VAFSRE
Sbjct:  402 PQCQVFVRDSSFRLPSDAATPIILIGPGTGIAPMRALLQERSFQKSRGLPVGETVLYFGCKTRDQDFLYQEELEQFQAEGVLTSLEVAFSRE 493
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BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Match: A0A7S2CI47_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CI47_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.720e-22
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    7 GAHNSIGPQCRVFVRGSTFRLPEDTTISIVMIGPGTGVA-----LQEMSWQKSEGSEVGRSVLYFRCRRRNCDCIYK-ELEAFKADGTLDMLRVAFSRE 285
            G      P CRVFVR S+FRLPED    I++IGPGTG+A     LQE   Q+ +G +VG S+LYF C++R+ D +Y+ ELEAF+  G L  L +AFSRE
Sbjct:  327 GLKRQAWPSCRVFVRDSSFRLPEDPRTPILLIGPGTGIAPMRALLQERDAQRQQGLDVGASILYFGCKKRDVDFLYEDELEAFRRSGALTALHLAFSRE 425
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BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Match: A0A7S2P8A4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P8A4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.510e-22
Identity = 51/91 (56.04%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:   34 CRVFVRGSTFRLPEDTTISIVMIGPGTGVA-----LQEMSWQKS-EGSEVGRSVLYFRCRRRNCDCIYK-ELEAFKADGTLDMLRVAFSRE 285
            CRVF+R STFRLP+D +  I+M+GPGTG+A     LQE S+QK  E   VG+++LYF C+RR+ D +Y  ELEAF+ +GTL  L++AFSRE
Sbjct:  514 CRVFIRDSTFRLPQDPSKPIIMVGPGTGIAPMRALLQERSYQKHVEKKNVGKNILYFGCKRRDLDYLYADELEAFQKEGTLTDLQLAFSRE 604
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BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Match: A0A662XW40_9STRA (NADPH--cytochrome P450 reductase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XW40_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.620e-21
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   28 PQCRVFVRGSTFRLPEDTTISIVMIGPGTGVA-----LQEMSWQKSEGSEVGRSVLYFRCRRRNCDCIYK-ELEAFKADGTLDMLRVAFSRE 285
            P  R+FVR STFRLP++    I++IGPGTG+A     LQE + QK  G +VG+S+LYF CR+R+ D IYK ELE F+ +G L  + +AFSRE
Sbjct:  536 PAARIFVRASTFRLPKNALTPIILIGPGTGIAPMRAFLQERAKQKESGVDVGKSILYFGCRKRDEDFIYKDELETFQENGVLSEMNLAFSRE 627
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BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Match: K0QZ97_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZ97_THAOC)

HSP 1 Score: 96.3 bits (238), Expect = 3.590e-21
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:   10 AHNSIGPQCRVFVRGSTFRLPEDTTISIVMIGPGTGVA-----LQEMSWQKSEGSEVGRSVLYFRCRRRNCDCIYK-ELEAFKADGTLDMLRVAFSRE 285
            A + +G   R FVR STFRLP  T   IVM+GPGTG+A     LQE    +S G + G+SVLYF C+ R+ D IY+ ELEAF  DGTLD L +AFSRE
Sbjct:  609 ASSKVGDTVRAFVRESTFRLPRRTERPIVMLGPGTGIAPMRALLQERRHGRSNGVDHGKSVLYFGCKDRSMDYIYRDELEAFVEDGTLDGLHLAFSRE 706
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BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Match: A0A6V2EWA1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EWA1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.870e-21
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   37 RVFVRGSTFRLPEDTTISIVMIGPGTGVA-----LQEMSWQKSEGS-EVGRSVLYFRCRRRNCDCIYK-ELEAFKADGTLDMLRVAFSRE 285
            RVF R STFRLP DT+  I+M+GPGTGVA     LQE S+Q+ +    VG +VLYF C+ RN D IY+ E+E+FK +GTL+ LR+AFSRE
Sbjct:  536 RVFCRDSTFRLPSDTSRPIIMVGPGTGVAPMRALLQERSYQRIQQKLSVGENVLYFGCKNRNQDYIYEDEMESFKNEGTLNTLRIAFSRE 625
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BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Match: A0A2P4X1J1_9STRA (NADPH-cytochrome p450 reductase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X1J1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.030e-20
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   28 PQCRVFVRGSTFRLPEDTTISIVMIGPGTGVA-----LQEMSWQKSEGSEVGRSVLYFRCRRRNCDCIYKE-LEAFKADGTLDMLRVAFSRE 285
            P  R+F+R STFRLP++    I++IGPGTG+A     L E + Q+ +G  VG+S++YF CRRR+ D IYKE LE F+  G L  L +AFSRE
Sbjct:   86 PTARIFMRASTFRLPKNPLTPIILIGPGTGIAPMRAFLHERAKQQEDGVAVGKSIMYFGCRRRDEDFIYKEELEGFQESGVLSELHLAFSRE 177
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BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Match: A0A8K1C5U4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5U4_PYTOL)

HSP 1 Score: 94.7 bits (234), Expect = 1.240e-20
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   28 PQCRVFVRGSTFRLPEDTTISIVMIGPGTGVA-----LQEMSWQKSEGSEVGRSVLYFRCRRRNCDCIYK-ELEAFKADGTLDMLRVAFSRE 285
            P  R+FVR STFRLP+D    I++IGPGTG+A     L E +  +  G EVG+S+LYF CRR++ D IY+ ELE F+A G L  L +AFSRE
Sbjct:  527 PSARIFVRPSTFRLPKDPKTPIILIGPGTGIAPMRAFLHERAHMQKNGVEVGKSILYFGCRRQDDDYIYRDELEGFQASGVLTELHLAFSRE 618
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63941.13978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBE4_ECTSI9.640e-3063.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LBE3_ECTSI9.900e-3063.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RX15_9STRA2.240e-2357.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CI47_9STRA1.720e-2251.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2P8A4_9STRA7.510e-2256.04Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A662XW40_9STRA2.620e-2153.26NADPH--cytochrome P450 reductase n=2 Tax=Nothophyt... [more]
K0QZ97_THAOC3.590e-2155.10Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6V2EWA1_9STRA4.870e-2157.78Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A2P4X1J1_9STRA1.030e-2051.09NADPH-cytochrome p450 reductase n=1 Tax=Phytophtho... [more]
A0A8K1C5U4_PYTOL1.240e-2053.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63941contigH-elongata_contig63941:1227..1511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue3.1e-25
Seed eggNOG ortholog2880.D8LBE3
Preferred namecprA
KEGG koko:K00327
GOsGO:0000003,GO:0000166,GO:0001101,GO:0001505,GO:0003006,GO:0003420,GO:0003674,GO:0003824,GO:0003958,GO:0004128,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0005829,GO:0006066,GO:0006082,GO:0006091,GO:0006464,GO:0006473,GO:0006475,GO:0006575,GO:0006577,GO:0006629,GO:0006631,GO:0006694,GO:0006696,GO:0006723,GO:0006725,GO:0006805,GO:0006807,GO:0006950,GO:0006979,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007584,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008589,GO:0008610,GO:0008941,GO:0009055,GO:0009056,GO:0009058,GO:0009410,GO:0009437,GO:0009507,GO:0009536,GO:0009605,GO:0009653,GO:0009698,GO:0009719,GO:0009725,GO:0009737,GO:0009812,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010181,GO:0010243,GO:0010466,GO:0010605,GO:0010646,GO:0010647,GO:0010817,GO:0010893,GO:0010941,GO:0010951,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0016651,GO:0016653,GO:0016675,GO:0016705,GO:0016708,GO:0016787,GO:0017144,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019216,GO:0019218,GO:0019222,GO:0019395,GO:0019538,GO:0019748,GO:0019752,GO:0019867,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022603,GO:0022900,GO:0023051,GO:0023056,GO:0030154,GO:0030162,GO:0030258,GO:0030703,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0032268,GO:0032269,GO:0032330,GO:0032332,GO:0032350,GO:0032352,GO:0032354,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032768,GO:0032770,GO:0032787,GO:0032870,GO:0033993,GO:0034440,GO:0034641,GO:0034698,GO:0036094,GO:0036211,GO:0040008,GO:0042126,GO:0042127,GO:0042133,GO:0042135,GO:0042175,GO:0042221,GO:0042335,GO:0042493,GO:0042737,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043086,GO:0043154,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043281,GO:0043412,GO:0043434,GO:0043436,GO:0043543,GO:0043602,GO:0044092,GO:0044093,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045540,GO:0045542,GO:0045595,GO:0045597,GO:0045834,GO:0045861,GO:0045880,GO:0045940,GO:0046165,GO:0046209,GO:0046210,GO:0046620,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0047726,GO:0048037,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048638,GO:0048646,GO:0048856,GO:0048869,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050810,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051213,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051336,GO:0051341,GO:0051346,GO:0051353,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0055114,GO:0060191,GO:0060192,GO:0060255,GO:0060548,GO:0061035,GO:0061036,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0070988,GO:0071310,GO:0071371,GO:0071372,GO:0071375,GO:0071417,GO:0071466,GO:0071495,GO:0071704,GO:0072593,GO:0080090,GO:0090030,GO:0090031,GO:0090181,GO:0090205,GO:0090345,GO:0090346,GO:0097159,GO:0097164,GO:0097305,GO:0097367,GO:0097384,GO:0098588,GO:0098805,GO:0098827,GO:0106118,GO:0106120,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902652,GO:1902653,GO:1902930,GO:1902932,GO:1903010,GO:2000026,GO:2000027,GO:2000116,GO:2000117,GO:2001057
EggNOG free text desc.NADPH-hemoprotein reductase activity
EggNOG OGsCOG0369@1,KOG1158@2759
EC1.6.2.4
COG Functional cat.P
BiGG ReactioniMM904.YHR042W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.1011097-CDS-H-elongata_contig63941:1226..15111622931025.1011097-CDS-H-elongata_contig63941:1226..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63941 1227..1511 +
1691679666.6505928-CDS-H-elongata_contig63941:1226..15111691679666.6505928-CDS-H-elongata_contig63941:1226..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63941 1227..1511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63941.13978.1prot_H-elongata_contig63941.13978.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63941 1227..1511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63941.13978.1

>prot_H-elongata_contig63941.13978.1 ID=prot_H-elongata_contig63941.13978.1|Name=mRNA_H-elongata_contig63941.13978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
NGGAHNSIGPQCRVFVRGSTFRLPEDTTISIVMIGPGTGVALQEMSWQKS
EGSEVGRSVLYFRCRRRNCDCIYKELEAFKADGTLDMLRVAFSRE
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mRNA from alignment at H-elongata_contig63941:1227..1511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63941.13978.1 ID=mRNA_H-elongata_contig63941.13978.1|Name=mRNA_H-elongata_contig63941.13978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig63941:1227..1511+ (Himanthalia elongata Himel1 dioecious)
AACGGTGGAGCACACAATAGCATCGGACCTCAGTGTCGAGTATTCGTGCG
TGGATCGACGTTCCGACTGCCGGAAGATACCACCATCTCCATCGTGATGA
TCGGGCCAGGCACCGGCGTGGCTCTACAGGAAATGTCCTGGCAGAAGTCT
GAGGGGTCCGAGGTCGGTAGGAGCGTACTGTACTTCCGGTGCAGGAGAAG
GAACTGCGACTGCATCTACAAGGAGCTGGAAGCATTCAAGGCGGACGGTA
CGCTCGATATGTTACGTGTGGCGTTTAGTCGCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig63941:1227..1511+

>mRNA_H-elongata_contig63941.13978.1 ID=mRNA_H-elongata_contig63941.13978.1|Name=mRNA_H-elongata_contig63941.13978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig63941:1227..1511+ (Himanthalia elongata Himel1 dioecious)
AACGGTGGAGCACACAATAGCATCGGACCTCAGTGTCGAGTATTCGTGCG
TGGATCGACGTTCCGACTGCCGGAAGATACCACCATCTCCATCGTGATGA
TCGGGCCAGGCACCGGCGTGGCTCTACAGGAAATGTCCTGGCAGAAGTCT
GAGGGGTCCGAGGTCGGTAGGAGCGTACTGTACTTCCGGTGCAGGAGAAG
GAACTGCGACTGCATCTACAAGGAGCTGGAAGCATTCAAGGCGGACGGTA
CGCTCGATATGTTACGTGTGGCGTTTAGTCGCGAGAACGGTGGAGCACAC
AATAGCATCGGACCTCAGTGTCGAGTATTCGTGCGTGGATCGACGTTCCG
ACTGCCGGAAGATACCACCATCTCCATCGTGATGATCGGGCCAGGCACCG
GCGTGGCTCTACAGGAAATGTCCTGGCAGAAGTCTGAGGGGTCCGAGGTC
GGTAGGAGCGTACTGTACTTCCGGTGCAGGAGAAGGAACTGCGACTGCAT
CTACAAGGAGCTGGAAGCATTCAAGGCGGACGGTACGCTCGATATGTTAC
GTGTGGCGTTTAGTCGCGAG
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