mRNA_H-elongata_contig6392.13976.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6392.13976.1
Unique NamemRNA_H-elongata_contig6392.13976.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Match: D8LF51_ECTSI (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF51_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 1.680e-91
Identity = 155/189 (82.01%), Postives = 170/189 (89.95%), Query Frame = 3 
Query: 5664 VKSGTYDFEANKALLKLYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSLKRAADSLETAKFVDFWQTCAEGDMPALIEKIPGYKKHIREFIVQTLASTFQSVKRESMEQSLDLDGVELDAFVAANSNVVSESPDRREFKFALNEFNQIQPKKFKESVEFEKILKTIDKLSSF 6230
            VKSGTYDFEANKALLKLYQFFPDLC+ E VAL+LAKALMNVPSTDFMAL+YIV P LHR EPV SLKRAADSLETAKFVDFWQTCA+GDMPALIE +PG+KKH+R FIV TLA+TFQ   R++MEQ LDLDG EL +FV AN++VVS SPD  +FKFALNEFNQIQPKKFKESVEF+KILKTIDKLSSF
Sbjct:    7 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF 195
[Close]
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Match: A0A835Z1S6_9STRA (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S6_9STRA)

HSP 1 Score: 226 bits (575), Expect = 2.200e-63
Identity = 120/221 (54.30%), Postives = 149/221 (67.42%), Query Frame = 3 
Query: 5562 MEFPASYEGMRPVVEHEYFDHRAVPQLEEYLDEQVKSGTYDFEANKALLKLYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSLKRAADSLETAKFVDFWQTCAEGDMPALIEKIPGYKKHIREFIVQTLASTFQSVKRESMEQSLDLDGVELDAFVAANSNVVSESPDRREFKFALNEFNQIQPKKFKESVEFEKILKTIDKLS 6224
            M+ PA +  MRPVVEHEYFDHR VPQLE YL EQ  SGTYDFEANKALLKLYQFFPDL K++ VAL   KALM +P+ DF AL Y+        EP++SL RA D+LE A++  FW    E +  ALI+++PG+    R   +  LA+TFQSV   ++E+++ L G EL+AFV      V     R    FA NEFNQ+QPK+FKESVEFEK+LK +  LS
Sbjct:    5 MQLPARHAAMRPVVEHEYFDHRVVPQLEAYLAEQASSGTYDFEANKALLKLYQFFPDLVKADMVALAAGKALMALPAPDFAALSYLAPAAALAAEPLTSLARALDALEGARYGAFWAVTREPEAAALIQRLPGFADQARRVALSALAATFQSVPLSALEEAVALSGAELEAFVGGLGGEVKLGDGRA--AFARNEFNQMQPKRFKESVEFEKVLKAVGTLS 223
[Close]
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Match: A0A7S2FZN4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZN4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.130e-44
Identity = 94/222 (42.34%), Postives = 142/222 (63.96%), Query Frame = 3 
Query: 5562 MEFPASYEGMRPVVEHEYFDHRAVPQLEEYLDEQVKSGTYDFEANKALLKLYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSLKRAADSLETAKFVDFWQTCAEGDMPALIEKIPGYKKHIREFIVQTLASTFQSVKRESMEQSLDLDGVELDAFVAANSNVVSESPDRREFKFALNEFNQIQPKKFKESVEFEKILKTIDKLSS 6227
            M  PASYE +  +++ + F+  ++ +L+ YLDEQ+ + TYDF ANKALLKLY F+PD    + +AL L KALM +PSTD M L+Y+V      +EPV++L R A  LETAKFV+FW+    G    L++ + G+ + IR +++  L+ TFQ V+ E+    L LD  +L+ +V+AN +    S + +   F  N  NQ +PKKFKE++ F+++L  ID L+S
Sbjct:    1 MALPASYEEIATLLDEQAFEKSSIEKLQAYLDEQIATETYDFVANKALLKLYSFYPDQASDQYIALALTKALMALPSTDMMLLLYLVPESAQTKEPVATLVRCAVHLETAKFVEFWEVANLGGNE-LLDAVSGFDEAIRSYMIGVLSITFQKVESETFADLLALDEGDLEEYVSANQSD-KLSIEGKNVVFTPNSENQQRPKKFKENISFDQMLPLIDFLAS 220
[Close]
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Match: A0A7S2H0N4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0N4_9STRA)

HSP 1 Score: 153 bits (386), Expect = 5.500e-38
Identity = 85/222 (38.29%), Postives = 135/222 (60.81%), Query Frame = 3 
Query: 5559 QMEFPASYEGMRPVVEHEYFDHRAVPQLEEYLDEQVKSGTYDFEANKALLKLYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSLKRAADSLETAKFVDFWQTCAEGDMPALIEKIPGYKKHIREFIVQTLASTFQSVKRESMEQSLDLDGVELDAFVAANSNVVSESPDRREFKFALNEFNQIQPKKFKESVEFEKILKTIDKLS 6224
            +ME P S + +   +  +      +  L+EYL+EQV++ TYDF ANK L+KLYQF+P+      +AL + K++M +PSTD   L+Y+V   L  +EP+ +L R AD LETA+FV+FW+    G    L++ IPG+ + IR F++  L+ TFQ ++ E+    L LD   L+ F+A  ++ +    +++   F  N  NQ +PKKFKE++ F+ +L  I+ LS
Sbjct:    5 EMEIPQSAQSIAEKLALDEHSVELIDTLQEYLNEQVQTDTYDFMANKTLMKLYQFYPERSNENCIALAVTKSMMALPSTDLSVLLYLVPETLALKEPIHTLVRCADHLETARFVEFWEVANLGGNE-LLDAIPGFPEAIRSFMIGVLSMTFQKLQSETFLDLLMLDEESLEEFIAEQTDKLCLE-EKKFVIFLPNSENQSRPKKFKENISFDHMLPIINLLS 224
[Close]
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Match: W7U338_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U338_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.720e-34
Identity = 84/220 (38.18%), Postives = 132/220 (60.00%), Query Frame = 3 
Query: 5571 PASYEGMRP-VVEHEYFDHRAVPQLEEYLDEQVKSGTYDFEANKALLKLYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSLKRAADSLETAKFVDFWQTCAEGDMPALIEKIPGYKKHIREFIVQTLASTFQSVKRESMEQSLDLDGVELDAFVAANSNVVSESPDRREFKFALNEFNQIQPKKFKESVEFEKILKTIDKLSS 6227
            P+SY  +   V+    +    V  LEEYL  QVK G+YDFEANK+LLKLY  +P L  +E+V  +L KAL+N+P+TDF  L+YI+   L   E V ++K AA++LETA++ DFW         A+   IP +K  IR+ I+   A+T+++V +  +   + L G ELD+F+ AN+  +    +     FA N+ NQ   +K+KE V+ + +L  +++L++
Sbjct:   44 PSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSIL--NSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261
[Close]
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Match: A0A7S2WSD7_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSD7_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.550e-34
Identity = 82/215 (38.14%), Postives = 123/215 (57.21%), Query Frame = 3 
Query: 5583 EGMRPVVEHEYFDHRAVPQLEEYLDEQVKSGTYDFEANKALLKLYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSLKRAADSLETAKFVDFWQTCAEGDMPALIEKIPGYKKHIREFIVQTLASTFQSVKRESMEQSLDLDGVELDAFVAANSNVVSESPDRREFKFALNEFNQIQPKKFKESVEFEKILKTIDKLSS 6227
            E +   +    +D  A+  LE Y+ EQV+  TYDF ANKALLKLYQFFP       VAL+L KALM +PSTD   L+Y+V   +  +EP+ +L R  + LET KFV+FW+    G    L++ I G+ + +R++++  L  TFQS++ E     + L    L  +V   S+V+    + ++  F  N  NQ QPK FKE++ F+ +   +  L+S
Sbjct:   12 ESVATALRRNEYDQDAIELLESYVAEQVEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQSLESEVFMDLVALPDEHLAEYVGTKSDVMRL--EGKQVIFVENPQNQPQPKTFKENISFDHLAPVMSLLTS 223
[Close]
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Match: A0A7S4ULZ9_GUITH (Eukaryotic translation initiation factor 3 subunit K n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4ULZ9_GUITH)

HSP 1 Score: 129 bits (324), Expect = 7.350e-30
Identity = 71/210 (33.81%), Postives = 121/210 (57.62%), Query Frame = 3 
Query: 5583 EGMRPVVEHEYFDHRAVPQLEEYLDEQVKSGTYDFEANKALLKLYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSLKRAADSLETAKFVDFWQTCAEGDMPALIEKIPGYKKHIREFIVQTLASTFQSVKRESMEQSLDLDGVELDAFVAANSNVVSESPDRREFKFALNEFNQIQPKKFKESVEFEKILKTI 6212
            E ++ ++    FD    PQLE Y+DEQ+K G  D +AN ALL+ YQ+ P    SE V  +L KALM +P+TDFM  +Y+V P   + + +  LK+ +D LET +F ++W   A+    ++   IPG+ + IR++IV  +++T+Q + R+ +E  ++L G +LD  +     V   S    + +  +NEFN+   K  ++ + F+++   I
Sbjct:    3 EEVQRLLSERRFDPSITPQLEAYVDEQIKGGYTDLDANLALLRFYQYNPATANSEVVCKILVKALMQMPATDFMLCMYLV-PGAVKEQKIEVLKQLSDKLETCQFKEYWADMADEKNASVANGIPGFHEAIRQYIVGVISATYQVIARDELEILINLKGAQLDQLLEEKKWVAKGS----DVQIPVNEFNEASVKFKQDGISFDQLAPII 207
[Close]
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Match: A0A7S2SPG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPG3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.280e-27
Identity = 63/147 (42.86%), Postives = 91/147 (61.90%), Query Frame = 3 
Query: 5583 EGMRPVVEHEYFDHRAVPQLEEYLDEQVKSGTYDFEANKALLKLYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSLKRAADSLETAKFVDFWQTCAEGDMPALIEKIPGYKKHIREFIVQTLASTFQSVK 6023
            E +   +    +D  A+  LE Y+ EQV+  TYDF ANKALLKLYQFFP       VAL+L KALM +PSTD   L+Y+V   +  +EP+ +L R  + LET KFV+FW+    G    L++ I G+ + +R++++  L  TFQS++
Sbjct:   12 ESVATALRRNEYDQDAIELLESYVAEQVEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQSLE 157
[Close]
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Match: L8GVU4_ACACA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVU4_ACACA)

HSP 1 Score: 115 bits (289), Expect = 4.150e-25
Identity = 69/200 (34.50%), Postives = 110/200 (55.00%), Query Frame = 3 
Query: 5628 AVPQLEEYLDEQVKSGTYDFEANKALLKLYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSLKRAADSLETAKFVDFWQTCAEGDMPA-LIEKIPGYKKHIREFIVQTLASTFQSVKRESMEQSLDLDGVELDAFVAANSNVVSESPDRREFKFALNEFNQIQPKKFKESVEFEKILKTIDKLS 6224
            ++PQL+ YL EQ+   +YDFEAN ALLK++QF P     + V  +L KALMN+P  DF   +Y++    H+ E V++LK+ ++ LETA+F  FW    E    + L++  PG+++ I+ F V  L   +QSV  + +  ++ L+G  LD FVA      +E          + E NQ +  K  E ++ +K+      L+
Sbjct:   22 SLPQLKAYLQEQIDQRSYDFEANLALLKIFQFNPSHIDIDVVQKVLIKALMNLPHMDFPLSLYVLPEAAHQNEGVAALKKVSNLLETAQFTGFWTLFEEDSATSVLLKNFPGFREAIQSFAVSVLTVAYQSVPVDVLASAVHLNGAALDEFVAKQEGWKTEDDL---VTLPVTELNQARQIKTTEQLDRKKVANIFSVLT 218
[Close]
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Match: A0A1X6NQY4_PORUM (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQY4_PORUM)

HSP 1 Score: 115 bits (287), Expect = 9.480e-25
Identity = 62/168 (36.90%), Postives = 104/168 (61.90%), Query Frame = 3 
Query: 5598 VVEHEYFDHRAVPQLEEYLDEQVKSGTYDFEANKALLKLYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSLKRAADSLETAKFVDFWQTCAEGDMPALIEKIPGYKKHIREFIVQTLASTFQSVKRESMEQSLDLDGVELDAFVAANSNVV 6101
            +++ + +D   +P LEEY+++QV +GT D  AN A LKLYQF+P   K+  V+ +L KA+M +PSTDF+  +Y++       EP+ +L + A  LET +F DFW   A G +  L++ +PG+ + +R F++  +  T++ V+R  + + L L+GV+  A  AA   V+
Sbjct:   17 LLQSQRYDPDILPTLEEYVEQQVATGTNDAMANLATLKLYQFYPATYKTAVVSKILIKAIMALPSTDFLCAMYLIPAATADDEPIPALVQLASMLETGRFEDFWP--ATGAVRQLLDGVPGFDEAVRSFMLVVIGRTYKRVERTVLARLLGLEGVDEAAEEAAVDEVI 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6392.13976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF51_ECTSI1.680e-9182.01Eukaryotic translation initiation factor 3 k subun... [more]
A0A835Z1S6_9STRA2.200e-6354.30Eukaryotic translation initiation factor 3 k subun... [more]
A0A7S2FZN4_9STRA3.130e-4442.34Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2H0N4_9STRA5.500e-3838.29Eukaryotic translation initiation factor 3 subunit... [more]
W7U338_9STRA1.720e-3438.18Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2WSD7_9STRA5.550e-3438.14Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4ULZ9_GUITH7.350e-3033.81Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2SPG3_9STRA2.280e-2742.86Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
L8GVU4_ACACA4.150e-2534.50Eukaryotic translation initiation factor 3 subunit... [more]
A0A1X6NQY4_PORUM9.480e-2536.90Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6392contigH-elongata_contig6392:1396..9199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.4
Seed ortholog evalue2.1e-80
Seed eggNOG ortholog2880.D8LF51
Preferred nameEIF3K
KEGG koko:K05699,ko:K13344,ko:K15028
KEGG TC3.A.20.1
KEGG Pathwayko04146,ko04510,ko04520,ko04530,ko04670,ko04810,ko05146,ko05203,ko05322,map04146,map04510,map04520,map04530,map04670,map04810,map05146,map05203,map05322
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.ribosome binding
EggNOG OGsKOG3252@1,KOG3252@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons7
Model size1019
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6392.13976.1prot_H-elongata_contig6392.13976.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6392 6957..9023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931024.1271257-UTR-H-elongata_contig6392:1395..15661622931024.1271257-UTR-H-elongata_contig6392:1395..1566Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6392 1396..1566 +
1691679666.5189192-UTR-H-elongata_contig6392:1395..15661691679666.5189192-UTR-H-elongata_contig6392:1395..1566Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6392 1396..1566 +
1622931024.2651353-UTR-H-elongata_contig6392:9023..91991622931024.2651353-UTR-H-elongata_contig6392:9023..9199Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6392 9024..9199 +
1691679666.5951552-UTR-H-elongata_contig6392:9023..91991691679666.5951552-UTR-H-elongata_contig6392:9023..9199Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6392 9024..9199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931024.147106-CDS-H-elongata_contig6392:6956..70581622931024.147106-CDS-H-elongata_contig6392:6956..7058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 6957..7058 +
1691679666.5321515-CDS-H-elongata_contig6392:6956..70581691679666.5321515-CDS-H-elongata_contig6392:6956..7058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 6957..7058 +
1622931024.1641796-CDS-H-elongata_contig6392:7236..73441622931024.1641796-CDS-H-elongata_contig6392:7236..7344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 7237..7344 +
1691679666.5421612-CDS-H-elongata_contig6392:7236..73441691679666.5421612-CDS-H-elongata_contig6392:7236..7344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 7237..7344 +
1622931024.19351-CDS-H-elongata_contig6392:7544..76851622931024.19351-CDS-H-elongata_contig6392:7544..7685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 7545..7685 +
1691679666.5525122-CDS-H-elongata_contig6392:7544..76851691679666.5525122-CDS-H-elongata_contig6392:7544..7685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 7545..7685 +
1622931024.2106278-CDS-H-elongata_contig6392:7963..81041622931024.2106278-CDS-H-elongata_contig6392:7963..8104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 7964..8104 +
1691679666.565112-CDS-H-elongata_contig6392:7963..81041691679666.565112-CDS-H-elongata_contig6392:7963..8104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 7964..8104 +
1622931024.2297728-CDS-H-elongata_contig6392:8510..85821622931024.2297728-CDS-H-elongata_contig6392:8510..8582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 8511..8582 +
1691679666.5759907-CDS-H-elongata_contig6392:8510..85821691679666.5759907-CDS-H-elongata_contig6392:8510..8582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 8511..8582 +
1622931024.2478867-CDS-H-elongata_contig6392:8915..90231622931024.2478867-CDS-H-elongata_contig6392:8915..9023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 8916..9023 +
1691679666.5848527-CDS-H-elongata_contig6392:8915..90231691679666.5848527-CDS-H-elongata_contig6392:8915..9023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6392 8916..9023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6392.13976.1

>prot_H-elongata_contig6392.13976.1 ID=prot_H-elongata_contig6392.13976.1|Name=mRNA_H-elongata_contig6392.13976.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
MEFPASYEGMRPVVEHEYFDHRAVPQLEEYLDEQVKSGTYDFEANKALLK
LYQFFPDLCKSESVALMLAKALMNVPSTDFMALVYIVSPPLHRREPVSSL
KRAADSLETAKFVDFWQTCAEGDMPALIEKIPGYKKHIREFIVQTLASTF
QSVKRESMEQSLDLDGVELDAFVAANSNVVSESPDRREFKFALNEFNQIQ
PKKFKESVEFEKILKTIDKLSSF*
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mRNA from alignment at H-elongata_contig6392:1396..9199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6392.13976.1 ID=mRNA_H-elongata_contig6392.13976.1|Name=mRNA_H-elongata_contig6392.13976.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7804bp|location=Sequence derived from alignment at H-elongata_contig6392:1396..9199+ (Himanthalia elongata Himel1 dioecious)
CGTTTAAGGGGAAGTGGTGGATCCTCTAAGAACTAAGTTATACTGCGAAG
ATCTATTGAAGAAGGTGGCGTCATCCTAGGCCAGCCGAGCTCGTTGGGTC
ACGATTGGCTTGGCGAATCATCGCACGTGCGCCCCTGCTATACACGAAGA
ACGAGGTTAACGCTGATACAGGTACATAATACGGTACTCGGAGTAGTTTA
CCTTGAAGGTCGCACAGATGGTTGTGGTAACTATCACAATTATACTTCCT
ATCATTTAAGTGCCCGATGTGCCTGTTCATCACTTTGGATGTCTTTTCAA
ATAAGGGTTGTGATGACAGACAGCACTGTCTGTGTGGTCATGACACAAAA
GCACAGTAAGATCAAACGGAATTAGTTGCCTCTTACTCGCGACCAGCTGA
ACAGGAGAAATGTTTTTTTCCCTATCCCCGTTCGCGCCTAAAAAATTGGT
CTCGCGTGACGGGGTCGGCAACCCTGTCCCGCGTCAGCCTGCTCATTCTC
TCAACCCAGGTTGAACCTGGTGCGTACTCCCGCGATCCACTGGATCCTCT
CGTTTTCCGCGACGGCGTCCATCTCTACCGTCAACCGCCATCGGGACAAT
CCCGATTTTATGAATTCACGCAATTGCGTACCGATGGCGTGTACCACCGA
GAGTCCGCCGGCACTGAGCCAGCAGACCTCAAGGTAGCTAGAGTAACGGG
TACAAGTCTATTCAGGTCACCCCATGTACCAATATTAATGATTGTGCGCC
TCTTTTCCCACACCCACTATTAAGTGTTCATGTGCGATACAGTCACAGAC
AGTCTCGGAGGCGTACTGTGTACCAATAGTGGGTGTGGGAAAAGAGAGGT
GCACGATATTTGGTCCATGGGGTTACCTGAATAGGCCGTACCCGTTACTC
AAGCTATCTTGAGGACTGTTGGCTCAGTGCCGGCGGACTCTCGGTGGCAA
ACGCCATCGGTACGCAATTGTGTGACCCAATGAACTGGCAATTGGCCCGA
ATTGCCGTTGACGGTAGAGACTGACACCGTCGCGGAAAGCGAGGGAATCG
AGATGATCTCGGGAGTACGTACCATATTAAGCCTAGGATCGTAGAATGAG
CAAGCTGACGTGAGACGGGACTGCCGAACCCGTCTCGCGAGACCAAATTC
TCAGGCGCGAACGGGAACATCAAAAATCAATTTTCCCTGTTCGGCTGACC
ATAAGCAGGCGACAACCATATACGATTGATCACATATATGCAATGACCAG
ACACACACACACACATACACACTTTTTGTAATATGATTGATCCCCCATTA
GGAGGATCAATACGTGTACGTAGCCTAAAACCGGGGCTTGTCACGGGAAA
AAAAAATCACGGGAAATCTCACGGGACGGGATTTTCTCCCCTGTCCCGAC
ATTCTTTTGGACGACAGGAAATCGGTCCCGTCCCGTCCCGATTTTTTTTG
GCGACGGGAAATCGGTCACGCCCCGTCCCGGCGTTTTTTTGGCGACGGGA
AAACGGTCTCATCCCGTTCCGTCCCGACACAACGGGAAAATTTACCGTCC
CGTCCCGTCCTCGCGGTGAATTCCCGACATTTCTCACGGTAAATTCCCGA
TATTTCTCACGGGAATTCCTGCTGAATCTGACGGGAACTTGAGAATATCT
CTCCACGTGCGGATGTTTTCAGGAGACGCTCCAACGACGTCACGTTATTG
AGGTTCCGCTGTTGAACTTATAGTGCTGTCAACCTCTCGCAGTAGGATGC
GACATGGCGGTTTCGAGGTTGGCACCGTCTGGCCGGTGGTTTTCACTATT
CGTTTTTTACTCCCCGGTACCGCAAGGGGTACTTTGGATGTGTTCCTCTT
ATATTTTATCTCGTGCTTCTGAAAACGCCGCTGTTTTTTTGCTTCTTGAG
TGCTCAAGGTGCAAGTAAAGTGGCCAATGTTGTAGATGCGCATATTCTGC
CGCGCTCTTTTGCATTTGGGAGTGCTGGAACAACAATCTGCCATTCGTGC
CTTTTTTTTTCTGTTCTGGTGGGGCTGTAGTAGGAGTAGCGGGCGTGACT
GCGATACCATGTAGTTATTTGTTATTTTTTTGTCGTAATCTGTCATCACT
AGTTTTCACCCTGCCGTGAATGCACTGTGCTTGCTCTGGAAGATTTTCTG
GCTTTTGACGTATACAAAACACGCCGTGCCAACTACACTCGTCTAGTGTA
AGCTTTCGCCCTGTCTCCCTCGACCTGCTTCACACACCATCACTGAAGTG
CGCCTACATTTCTTCATCCTGCTTTAATCAGCACTACTACTGACGACGGA
GAGGAGTTGCCCCCTGGACTGCACCTCTCATGGTGCGAAGAAGGCGTGGA
TGTTCGGAGGGTTCTAATGAGTTCATATGTTTTTTTTTAATGAAAAAAGA
TAACGAGTTGCAATGAACCCGATGCTGCTCACTGTCTTGTTTCATTCAGA
TTTGGTGGGGTATTGCGTCTTACCTTCATCTGCGGTACTTCCTTCGGTGT
TGCTGTTTTTGTGATTGATGATTGGTTGCCGTCGCTATTATTAATCGATT
CAACTGTTATTGTTGGATGTTGTGCCTCAAATCCGGTGATAGTTTATTCG
TGAACATGTCGATATATCGCTGGACTAAATTATGGCCTCTTCGTTTTAGT
TTCGGGGGGTCACCAACATGGTAGCGGCTATTTGCAGGACGTGGCATTTA
CAGTAGAACCTCCAGATCATTCACGCGAGACGTGGAAGCCCCGGGGATCA
TTCTTATACGTCCCCCAAAACAGGTTCTCTTTTGCCCGATCGATACACAC
ACACACAGCTTGGACCCAACCCGACCGTAACCCTAACCCAAACTCATACC
CAAATAAAAGTTTACAGCTGCTACAGCTGCTGGCCTCTTCTTCACCCCCA
CTACATTTTTGTATCCGTATGTACACCTCGAACTAACGCTCTTACTTACA
AGTAGTAGCTCTTACCCGACCCTAACCATAACCCAAACTCACACCCAAAT
AAAAGTTTTACTGGTGCGATAAAAAGTTGCCAACAGCTGTAAACGTTTGT
TTGGTTGTGAGTTTGGGTTAAAACGTTAACAGCTGCTACAGCGACTGGCC
GCTTCTCACCCCCACCACATTTTTTAATCCGTCTGCACACCTCAGACTGA
CTATATTACTTACAAGTAGTAGCTCTTAAGTTTTTGGTGGACCCAACCCT
AAACCTAACCCAAACCCACACAAAAATAAAAGTTTACAGCTGCTACAACC
GCTGGTGCGATAAACATTGCCAGCAGCTGTACACTTTTACTTGGGTGTAG
GTTTGAGTGAGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTGC
CGCGTTGTGTCTCTTTAATTTCCCTGTACATGTAGAGCTACGGCGGGGTA
TTGCGTTTTTTTGGGTGCAGATCTATTGCAGGTGTGATGAGAAGCGGCCA
GCAGCTGTAGCAGCAGTAAACGTTTATTTGGGTGTGGGTTTGGGTTAGTG
TTACGGTCGGGTGGGGTCCATGCTGTGTGTGTGTGTGTGTGTGCTGTGTT
GTGTTGTTGCTGTGTGGGGGGGGGGGGGCGGTCGGGCAAAAGAGAACCTG
TTTTGGGGGATGTAGAAGAATAATCCCCGGGGCTTCCACGTCNNNNNNNN
NNGGGTTTGGTTGGGGGTGGGGGGGGGGGGGGGTGGGGGGTTGGGGTGGG
GTGTGGGGTGGTGGTTGGTGGGGGGGGGGGGGGGGGGGGGGGGGGTCGGT
CGGGCAAAAGAGAACCTGTTTTGGGGGATGTAGAAGAATAATCCCCGGGG
CTTCCACGTCTCGCGTGAATGACCTGGAGGTTCTACTTTATATGCCCTGT
CCTACAAATAGCCACTCCCCACCAACATGTTCCCGTAAGAACGGGACGTG
ACGGGAAAATCTAACGGGAACATTCCCGTGAGGACGGGACGGGACGTAAA
TTCCTGTCCCAGTTATTTTTTTGGCGTCGGAAAATCGGTCTCGTCCCGTC
CCGATATTGGTTTGGCGACGGGAATTCCCGTCTCGAAGTCCCGTGACAAG
TCCTGCCTAAAATAATGACAGGGGCGGATTGCGCGGTTATGTACAATTTA
ATAAATACACACACACACACACGCCTGCTGTACGTCCTTCGCGCACCGAG
GTTCAATGTGTTCGGTGGGCGAAGCTCGCGTGACTACACGAGTGCGAGAT
ATAGGGAAGCGGGGAAAGAAGAGGACATCGGGTGTAACTTGACAGATTGT
GTTCGCTTTCAAGGGACTCTCAACAAAACTAAAAAGCGTGTTTTCCCTTT
TCGATGTTACTTCTTATTTTTGTCCACAAGACACGAGACGAGACACGCCA
GAGGTCCTCGCTTCTAGCGGCGATTTCCGAAGCTAATTATACGAGCGATG
CAAAGACAGAGAAACACAAACTCAATATATACGACTACAAGAGAAAAACC
CGATATACGCTCCTACAGCTCTATTTCTATCCACTTTTCCCTGTTTTTCT
ATCCAGTGGTGGTACCGTGTCAAAGCATTTCAAACTGCTCGACTGCGGCG
CAGTTATAGCTGGCGTGGAATTGGGCTCTGAGTTAGTCACATAGTAGCAG
CTTTCAGGCAAAAGCCCTCTCGCTGCGGCCCTTTCCGATAGGGAATAATC
CATTGCGATCGATGTTCCGGTTAATACCTAGAGTACTTGTTCAGCACGGA
GGGACTGTTGATTTCATCCTACTATTTTTGAAACTCTCTTTGCAGCGTCC
AGTGGTAAATTTGACACCACGGGAAAGGTGTAAACGCCTTTCCAAGGTGG
ATTCGCTGAGAGCCTGATTAGTCTGACTCGTGCTCGACGTGTAAATAAGA
AGATGATGGCTTCGTGGAAGTAGTTCGGCTGACCGGCGAGATAGCGATGA
ATGCCTTATAGCGTAATCTGATTGGTTGATTCCTTACCCATGGTGTCGTA
GTCATTGGCCCTCTTGTGCGCCGCAAATCAACACAAGCCAACAGAGTCCG
AGATTTGAATCATGAAAAAACCCCGTCTTCTCTTATTGGAGAAGTTGGTA
GGGCGTGCTAAATGTCGTTGGTCTCCAACGACAACCCGATCCGATGCCGG
CGGATGGTTTCGCCGAGCAAGGTTGGAATCGAGATGAAGGCGATGTGGTA
AGCAGGGGATGCAGTGGCTTCCCCCGCGGTTGGTGGGGAACGGAGCGCAC
GCAGGGGGCATCGTTGGGCATGGCCGGTACACTTTTAGTCGCCGACACAC
TTGTGACCCCTTTACCGAATGAAGCCACCTATTATCAGTTATATTATTTT
TAGGTACTGAAACCACTGTTCGGCGGGCCACCGTGCTCTCTCCTCCGCTG
GGAACCAATTTCTTCGCGTGCTACAAAAATGCAGCATAGGGTCCTGACGA
GCTTGCGCATTTTCTCAGCTCAGCGAGAGAAAAGGCCCTGAAAACCAGCA
CCCTCAGTCCTTAAGAGCGTTGAAGCAACACATGCTATCCTCTGCATCCT
ACTACTTGAGAGTTGATGCGAAAGGCGAATTTTCCCCTTCTCGTGAAACG
CCCCGCCACAGATGGAGTTCCCAGCGTCCTACGAGGGGATGCGTCCCGTG
GTGGAGCACGAGTATTTCGATCACCGGGCGGTGCCGCAACTTGAGGAGTA
CCTTGACGAACAGGTGAAGTGAGCGGAATATGGAACCCTTCTCCTCCCGC
TGCATGCACGGTAACAGGAAGAGAAGGCGAGCGGCTGGAGCTGGAGAGCT
AGATATTTTGCATGGCGAGATGATTTATTCAAAGTGTTACGTGATCCGTG
TGTATGTTCGACGTCACGACGCGACCTCGCTTTTTTTTCAGGTGAAGTCC
GGGACTTACGACTTCGAGGCGAACAAGGCGTTACTCAAGCTGTACCAATT
CTTCCCAGATCTGTGCAAGTCCGAGAGCGTTGCTCTCATGCTCGCAAAGG
TCGGTGCCCTGTCTAGGCGAACAGAGATCGCTGAAGTTGTTCGCTTCAAA
TAGGAGTTTCTTTACTTGAAAAGTTAGCACCACTGATAGATACACACGTG
ACGGGTTGGTGTCACAAATAAAAAGACGGAAGCTTGCGATACTTCTATCA
AGTGCTTCGATGTATTTAATTTGTTTCTCTTGCCATGTCCTTGTCACAGG
CGCTCATGAACGTTCCCAGCACAGATTTCATGGCCCTTGTGTACATCGTG
TCGCCACCGCTGCACCGGCGCGAGCCCGTGAGCTCTCTGAAGCGCGCAGC
AGACTCGTTAGAGACTGCGAAGTTTGTCGACTTTTGGCAGGTGCGACATG
GGCAGCGAATTGTCCATATGCATGTTATCTATCTCCTGACGAAGGTGCGA
GAATGCAATATTTTGCGGGAAAATATTAGTAATGTAGACAGCATGATGTG
TCGGAGTATTCAGGGCAGAGTCGGCATCGCGCAAGAATCGTTGGGGCTTC
CTTGAGCCACTGCAACCGTGACTGACGTTCCGACCCCTGTCTGCCTCAGG
AATGTTCTTAGCACCAATGTGCGGGCCAAGGCACACGCTCACACGCTCAA
AATGTCTTTCTCGCGCAGACATGCGCGGAGGGGGACATGCCTGCCCTTAT
AGAGAAAATACCGGGTTACAAGAAACACATTAGGGAGTTCATCGTCCAAA
CGTTGGCGTCGACGTTTCAGTCGGTAAAGCGGGAGAGCATGGAGCAGAGC
CTAGATCTGGTAAGAAATTTTAACAAGGCGGCAATTGTTGAAGCGACTCA
CCCGTGTGCTGCTGATCCAACTCCACGATTCTGTTGAGTGGGCCTTCCTT
CTCTTCCCGTACTACCCCCCATTCAATAAATCGAGGCCTACGCGCACCAT
GGATCGCCGAAGACTACCACGTGTTCTTCACAAGGGGAAGAAACACAATA
GTTGATTGATAACGGAATGCTCTACGGAATAGCGCAGATGTTGGCATCGG
ACCGGAGCGAATTAAGATTCCGACACAGAAGGAGTGCTTACCAAAAGACT
CGAAAAATACCGTTTTACCCCGTGGTTGTCTCTAAATCATTTCGCGCGCT
CAACAAGCGAGTCGCGCTTCCCCGCCGGAGTTTGACGTTGCCACTGTTCC
GTTCGTATGTCGCAGGATGGAGTGGAACTGGATGCATTCGTGGCGGCAAA
CTCGAACGTGGTGTCGGAATCTCCAGACCGGCGTGAGGTCAGCCACCGCC
GTATGCAGTGCTTAGCGTCGATATGCGGCTTTTGACGAACCGCCGTATGG
ATGGGAGTTTCCAATGCCTAGCGAGTTTGTCGCTCTCCTCAAGTTCCACG
CCAAGCTTCGGGGTTATCATGAAGGCTACGAAGTTTACAACCGGTGGGTA
TAGTTCTCGCTCCGGAGCCCCATTAAATGCTTTGGCCGGGCGTGACATGC
TTAGTGGACGAAAGCTCCTTCTGCCTCCGCCTGGCTGTGTGGATCTATCC
CACCTGTCTCATTTCTTCCTCGCGGGCGCGTGCTTACGTCCCACCCACCC
ACCCTCACTATTCGGTACAGTTCAAGTTCGCGCTGAACGAGTTCAACCAG
ATCCAGCCAAAGAAATTCAAGGAGTCGGTGGAGTTCGAGAAGATCCTCAA
GACCATCGACAAGCTCTCTAGTTTTTAAAAACTGGTAGCTCGCTGCTATT
TGTAGTTAGTGCCTACCCGGACTCACCTTGCGGTTCAGCTTTGCATCGCT
GTATGACGGTTCATCTTTCCTCTGCACTTGAGGTGGACGAGCAGCGTTCC
GCGCCGCCTACGGTAAATGGATCGTGATTCTGGGTTTCTTCCACGTAGTG
TAAA
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Coding sequence (CDS) from alignment at H-elongata_contig6392:1396..9199+

>mRNA_H-elongata_contig6392.13976.1 ID=mRNA_H-elongata_contig6392.13976.1|Name=mRNA_H-elongata_contig6392.13976.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig6392:1396..9199+ (Himanthalia elongata Himel1 dioecious)
ATGGAGTTCCCAGCGTCCTACGAGGGGATGCGTCCCGTGGTGGAGCACGA
GTATTTCGATCACCGGGCGGTGCCGCAACTTGAGGAGTACCTTGACGAAC
AGATGGAGTTCCCAGCGTCCTACGAGGGGATGCGTCCCGTGGTGGAGCAC
GAGTATTTCGATCACCGGGCGGTGCCGCAACTTGAGGAGTACCTTGACGA
ACAGGTGAAGTCCGGGACTTACGACTTCGAGGCGAACAAGGCGTTACTCA
AGCTGTACCAATTCTTCCCAGATCTGTGCAAGTCCGAGAGCGTTGCTCTC
ATGCTCGCAAAGGTGAAGTCCGGGACTTACGACTTCGAGGCGAACAAGGC
GTTACTCAAGCTGTACCAATTCTTCCCAGATCTGTGCAAGTCCGAGAGCG
TTGCTCTCATGCTCGCAAAGGCGCTCATGAACGTTCCCAGCACAGATTTC
ATGGCCCTTGTGTACATCGTGTCGCCACCGCTGCACCGGCGCGAGCCCGT
GAGCTCTCTGAAGCGCGCAGCAGACTCGTTAGAGACTGCGAAGTTTGTCG
ACTTTTGGCAGGCGCTCATGAACGTTCCCAGCACAGATTTCATGGCCCTT
GTGTACATCGTGTCGCCACCGCTGCACCGGCGCGAGCCCGTGAGCTCTCT
GAAGCGCGCAGCAGACTCGTTAGAGACTGCGAAGTTTGTCGACTTTTGGC
AGACATGCGCGGAGGGGGACATGCCTGCCCTTATAGAGAAAATACCGGGT
TACAAGAAACACATTAGGGAGTTCATCGTCCAAACGTTGGCGTCGACGTT
TCAGTCGGTAAAGCGGGAGAGCATGGAGCAGAGCCTAGATCTGACATGCG
CGGAGGGGGACATGCCTGCCCTTATAGAGAAAATACCGGGTTACAAGAAA
CACATTAGGGAGTTCATCGTCCAAACGTTGGCGTCGACGTTTCAGTCGGT
AAAGCGGGAGAGCATGGAGCAGAGCCTAGATCTGGATGGAGTGGAACTGG
ATGCATTCGTGGCGGCAAACTCGAACGTGGTGTCGGAATCTCCAGACCGG
CGTGAGGATGGAGTGGAACTGGATGCATTCGTGGCGGCAAACTCGAACGT
GGTGTCGGAATCTCCAGACCGGCGTGAGTTCAAGTTCGCGCTGAACGAGT
TCAACCAGATCCAGCCAAAGAAATTCAAGGAGTCGGTGGAGTTCGAGAAG
ATCCTCAAGACCATCGACAAGCTCTCTAGTTTTTAATTCAAGTTCGCGCT
GAACGAGTTCAACCAGATCCAGCCAAAGAAATTCAAGGAGTCGGTGGAGT
TCGAGAAGATCCTCAAGACCATCGACAAGCTCTCTAGTTTTTAA
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