prot_H-elongata_contig63896.13970.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63896.13970.1
Unique Nameprot_H-elongata_contig63896.13970.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: D7G9J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 4.750e-14
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 0
Query:    1 MGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSP--SVLISHSYIHIVVSD 64
            M LA   DTV L DGTYE+ LE+V DG   NPITVVGG GAIIKA +S   SV + HS+I + V++
Sbjct:   18 MDLAEAEDTVNLQDGTYEQALENVRDGESGNPITVVGGPGAIIKAQNSAGHSVFVGHSFIELKVAE 83          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.590e-13
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    1 MGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKA--TSSPSVLISHSYIHI 60
            M LA  GDTV L DGTYE+ LE+V DG   NPITVVGG GAIIKA  ++S SV + HS+I +
Sbjct:   18 MDLAEAGDTVSLQDGTYEQALETVRDGESGNPITVVGGPGAIIKAQNSASRSVFVGHSFIEL 79          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A6G4VEK0_9ACTN (Uncharacterized protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A6G4VEK0_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 7.960e-7
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    4 AGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAII 43
            AGPGD+++LAD TYE R ++ T GT D P+ V GG GA+I
Sbjct:  113 AGPGDSIRLADATYEGRFKATTPGTADQPVYVCGGPGAVI 152          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A7X5VK60_9ACTN (Uncharacterized protein n=1 Tax=Kribbella shirazensis TaxID=1105143 RepID=A0A7X5VK60_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 1.110e-6
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0
Query:    1 MGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKA 45
            +  A PGDT+KLADGTY    ++  DGT   PIT+ G  GA++KA
Sbjct:  354 LATAKPGDTIKLADGTYTGNFKTTVDGTSSAPITLTGSPGAVLKA 398          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: UPI000FEBAC41 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Streptomyces cavernae TaxID=2259034 RepID=UPI000FEBAC41)

HSP 1 Score: 53.1 bits (126), Expect = 1.490e-6
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    4 AGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAII 43
            AGPGD+++LADGTY+ R ++ T GT D P+ V GG  A+I
Sbjct:  113 AGPGDSIRLADGTYQGRFKATTPGTADRPVYVCGGSAAVI 152          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.280e-6
Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = 0
Query:    3 LAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSPSVL--------ISHSYI 58
            +AG GD V LADGTY E + ++  G E NP+ + GG GAII   S    L        I HSY+
Sbjct:   52 VAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYV 115          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A838HDR1_9BACT (DUF1565 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A838HDR1_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 1.340e-5
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0
Query:    1 MGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVG-GEGAIIKATSSPSV 51
            +GLAGPG T+ +  GTY E +ES   GT+ +PITV G G+G +  ++S P+V
Sbjct:   81 IGLAGPGTTILVHAGTYNEHIESSKSGTKASPITVAGAGDGLVTISSSLPAV 132          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.780e-5
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 0
Query:    4 AGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSPSVL-ISHSYI 58
            AG GDTV LADGTY E + +V  G   NP+ + GG  A++ A     V+ + HS++
Sbjct:   34 AGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVNAGDDGKVVYVQHSWV 89          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A841DMM0_9ACTN (Aryl-phospho-beta-D-glucosidase BglC (GH1 family) n=1 Tax=Kribbella solani TaxID=236067 RepID=A0A841DMM0_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 1.860e-5
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 0
Query:    4 AGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKAT 46
            A PGDT+KLADGTY    ++   GT   PIT+ G  GA++KA+
Sbjct:  355 AKPGDTIKLADGTYTGNFKTTVKGTASAPITLTGSAGAVLKAS 397          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: UPI001C2BEDE8 (right-handed parallel beta-helix repeat-containing protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI001C2BEDE8)

HSP 1 Score: 49.7 bits (117), Expect = 2.510e-5
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 0
Query:    1 MGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAII 43
            +  AGPGD+++LADGTY  R  + T G  +NP+ + GG GA++
Sbjct:  124 LAQAGPGDSIRLADGTYTGRFTAKTPGLAENPVFLCGGPGAVV 166          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G9J4_ECTSI4.750e-1457.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZD2_ECTSI4.590e-1361.29FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6G4VEK0_9ACTN7.960e-757.50Uncharacterized protein n=4 Tax=Streptomyces TaxID... [more]
A0A7X5VK60_9ACTN1.110e-651.11Uncharacterized protein n=1 Tax=Kribbella shirazen... [more]
UPI000FEBAC411.490e-655.00right-handed parallel beta-helix repeat-containing... [more]
A0A6H5K1D2_9PHAE5.280e-643.75Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
A0A838HDR1_9BACT1.340e-548.08DUF1565 domain-containing protein n=1 Tax=Gemmatim... [more]
A0A6H5KT05_9PHAE1.780e-542.86Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
A0A841DMM0_9ACTN1.860e-551.16Aryl-phospho-beta-D-glucosidase BglC (GH1 family) ... [more]
UPI001C2BEDE82.510e-546.51right-handed parallel beta-helix repeat-containing... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..61
e-value: 3.1E-12
score: 48.2
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 3..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63896contigH-elongata_contig63896:851..1042 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63896.13970.1mRNA_H-elongata_contig63896.13970.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63896 845..1042 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63896.13970.1 ID=prot_H-elongata_contig63896.13970.1|Name=mRNA_H-elongata_contig63896.13970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSPS
VLISHSYIHIVVSD
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence