mRNA_H-elongata_contig63880.13968.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 217 bits (552), Expect = 5.020e-71 Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 369
M+GKGKGGRG KKSTTRS KAGLQFPVGR+GRFLK GKY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct: 1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 215 bits (547), Expect = 1.720e-69 Identity = 112/122 (91.80%), Postives = 116/122 (95.08%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 366
M+GKGKGGRG KKSTTRS KAGLQFPVGR+GRFLK GKY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct: 46 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 206 bits (523), Expect = 2.030e-66 Identity = 107/119 (89.92%), Postives = 113/119 (94.96%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG KKST++S KAGLQFPV RIGR+LK GKY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.040e-65 Identity = 107/119 (89.92%), Postives = 113/119 (94.96%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG KKST++S KAGLQFPV RIGR+LK GKY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.410e-65 Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG KK T+RS KAGLQFPVGRIGRF+K GKYS RVG G PVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 201 bits (512), Expect = 6.310e-65 Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG+KKSTT S KAGLQFPVGRIGR+L+ GKY+ R+GAG PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct: 1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 201 bits (512), Expect = 6.310e-65 Identity = 103/122 (84.43%), Postives = 111/122 (90.98%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 366
M+GKGKGGRG KKSTT S KAGLQFPVGRIGR+L+ GKY+ R+GAG PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.610e-64 Identity = 99/121 (81.82%), Postives = 113/121 (93.39%), Query Frame = 1
Query: 7 GKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 369
GKGKGGRGDKK+ ++S KAGLQFPVGR+GRFLK G+Y++RVGAG PVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK K
Sbjct: 5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 199 bits (507), Expect = 4.580e-64 Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 1
Query: 1 MTGKGKGGRGD--KKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M GKGKGGRG KKST++S KAGLQFPV R+GRFLK G+Y++RVGAG PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 121
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: B7FWQ2_PHATC (Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7FWQ2_PHATC) HSP 1 Score: 199 bits (506), Expect = 5.900e-64 Identity = 100/117 (85.47%), Postives = 109/117 (93.16%), Query Frame = 1
Query: 7 GKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
GKGKGGRGDKKSTT S KAGLQFPVGRIGR+L+ GKY+ R+GAG PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKK
Sbjct: 5 GKGKGGRGDKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIAAGGVLPNIHAILLPKK 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63880.13968.1 >prot_H-elongata_contig63880.13968.1 ID=prot_H-elongata_contig63880.13968.1|Name=mRNA_H-elongata_contig63880.13968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYback to top mRNA from alignment at H-elongata_contig63880:2814..3185+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63880.13968.1 ID=mRNA_H-elongata_contig63880.13968.1|Name=mRNA_H-elongata_contig63880.13968.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig63880:2814..3185+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63880:2814..3185+ >mRNA_H-elongata_contig63880.13968.1 ID=mRNA_H-elongata_contig63880.13968.1|Name=mRNA_H-elongata_contig63880.13968.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig63880:2814..3185+ (Himanthalia elongata Himel1 dioecious)back to top |