mRNA_H-elongata_contig63880.13967.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63880.13967.1
Unique NamemRNA_H-elongata_contig63880.13967.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.130e-61
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGGKKKTNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 315
            MAKTPSKKSAKAPKKAG KK+TNKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 105
[Close]
BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 173 bits (438), Expect = 7.400e-54
Identity = 90/105 (85.71%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGGKKKTNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 315
            MAKTPSKKSAKAPKKAG K K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSE
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSE 119
[Close]
BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 172 bits (436), Expect = 9.880e-54
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAG-GKKKTNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 315
            MAK PSKK+AKAPKKA  GKKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSE
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSE 106
[Close]
BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 171 bits (434), Expect = 1.760e-53
Identity = 89/105 (84.76%), Postives = 100/105 (95.24%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGGKKKTNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 315
            MAKTPSKK+AKAPKKAG K+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSE
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSE 103
[Close]
BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.060e-53
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAG--GKKKTNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 315
            MAKTPSKKSAKAPKK G  GK +  KRIESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSE
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSE 107
[Close]
BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Match: A0A7S4S1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S1B0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.270e-52
Identity = 89/106 (83.96%), Postives = 99/106 (93.40%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGGKKK-TNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 315
            MAKTPSK+SAK PKKAG KKK + KR+ESYSSYIYKV+KQVHPDTGISK+GMSIMNSFI D+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSE
Sbjct:    1 MAKTPSKQSAKPPKKAGDKKKRSKKRVESYSSYIYKVMKQVHPDTGISKKGMSIMNSFIKDIFERIATEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSE 106
[Close]
BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 172 bits (436), Expect = 5.950e-52
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAG-GKKKTNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 315
            MAK PSKK+AKAPKKA  GKKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSE
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSE 239
[Close]
BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 167 bits (424), Expect = 7.330e-52
Identity = 90/105 (85.71%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGGKKKTNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 315
            MAKTPSKK+A APKKAGGK ++ KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSE
Sbjct:    8 MAKTPSKKAA-APKKAGGK-RSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSE 110
[Close]
BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 167 bits (423), Expect = 8.890e-52
Identity = 88/105 (83.81%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGGKKKTNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 315
            MAKTPSK+SAKAPKKA    K+ KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSE
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSE 105
[Close]
BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.550e-51
Identity = 88/105 (83.81%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGGKKKTNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSE 315
            MAKTPSKKSA  PKKA   K+  KR+ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSE
Sbjct:    6 MAKTPSKKSA-VPKKASTGKRNKKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSE 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63880.13967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI3.130e-6197.14Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA7.400e-5485.71Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA9.880e-5487.74Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU1.760e-5384.76Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA2.060e-5385.05Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A7S4S1B0_9STRA2.270e-5283.96Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A836CJT3_9STRA5.950e-5287.74Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U6DWX5_9STRA7.330e-5285.71Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B7FWR8_PHATC8.890e-5283.81Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2U5X6_9STRA2.550e-5183.81Histone H2B (Fragment) n=1 Tax=Attheya septentrion... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63880contigH-elongata_contig63880:2148..2462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue4.2e-47
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.043384-CDS-H-elongata_contig63880:2147..24621622931023.043384-CDS-H-elongata_contig63880:2147..2462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63880 2148..2462 -
1691679666.1114328-CDS-H-elongata_contig63880:2147..24621691679666.1114328-CDS-H-elongata_contig63880:2147..2462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63880 2148..2462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63880.13967.1prot_H-elongata_contig63880.13967.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63880 2148..2462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63880.13967.1

>prot_H-elongata_contig63880.13967.1 ID=prot_H-elongata_contig63880.13967.1|Name=mRNA_H-elongata_contig63880.13967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MAKTPSKKSAKAPKKAGGKKKTNKRIESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSE
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mRNA from alignment at H-elongata_contig63880:2148..2462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63880.13967.1 ID=mRNA_H-elongata_contig63880.13967.1|Name=mRNA_H-elongata_contig63880.13967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig63880:2148..2462- (Himanthalia elongata Himel1 dioecious)
ATGGCCAAGACTCCCTCCAAGAAGTCCGCCAAGGCACCCAAGAAGGCTGG
CGGCAAAAAGAAGACAAACAAGAGGATCGAATCGTACTCTTCGTATATTT
ACAAGGTACTCAAGCAAGTCCACCCAGACACGGGTATTTCTAAACGTGGA
ATGTCCATTATGAACTCGTTCATCAACGACGTGTTCGAACGTGTGGCCGG
CGAGTCAGGCAAGCTTACCCGCTATAACAAAAAGGCGACCCTTTCTTCGC
GCGAAGTTCAGACGGCTGTGCGCCTAATGCTTCCAGGAGAGCTCGCGAAA
CACGCCGTGTCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig63880:2148..2462-

>mRNA_H-elongata_contig63880.13967.1 ID=mRNA_H-elongata_contig63880.13967.1|Name=mRNA_H-elongata_contig63880.13967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig63880:2148..2462- (Himanthalia elongata Himel1 dioecious)
ATGGCCAAGACTCCCTCCAAGAAGTCCGCCAAGGCACCCAAGAAGGCTGG
CGGCAAAAAGAAGACAAACAAGAGGATCGAATCGTACTCTTCGTATATTT
ACAAGGTACTCAAGCAAGTCCACCCAGACACGGGTATTTCTAAACGTGGA
ATGTCCATTATGAACTCGTTCATCAACGACGTGTTCGAACGTGTGGCCGG
CGAGTCAGGCAAGCTTACCCGCTATAACAAAAAGGCGACCCTTTCTTCGC
GCGAAGTTCAGACGGCTGTGCGCCTAATGCTTCCAGGAGAGCTCGCGAAA
CACGCCGTGTCGGAGATGGCCAAGACTCCCTCCAAGAAGTCCGCCAAGGC
ACCCAAGAAGGCTGGCGGCAAAAAGAAGACAAACAAGAGGATCGAATCGT
ACTCTTCGTATATTTACAAGGTACTCAAGCAAGTCCACCCAGACACGGGT
ATTTCTAAACGTGGAATGTCCATTATGAACTCGTTCATCAACGACGTGTT
CGAACGTGTGGCCGGCGAGTCAGGCAAGCTTACCCGCTATAACAAAAAGG
CGACCCTTTCTTCGCGCGAAGTTCAGACGGCTGTGCGCCTAATGCTTCCA
GGAGAGCTCGCGAAACACGCCGTGTCGGAG
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