prot_H-elongata_contig63865.13965.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63865.13965.1
Unique Nameprot_H-elongata_contig63865.13965.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
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BLAST of mRNA_H-elongata_contig63865.13965.1 vs. uniprot
Match: D7FMI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMI5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.660e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 0 
Query:   16 GRAIFIIFIAFLNFALSDAGWLGTATAVLLLLLGGSMMIVYLKYPDLLDEAPGLGDLKT-APPRREGYAPPPEMPSTSL 93
            GRA+FIIFIAFLNFAL+DAGW  T T +LLLL GG+M++V+ KYP LLDEAPGLGDLKT APPR++ YAPPP MPSTSL
Sbjct:  125 GRALFIIFIAFLNFALTDAGWFATFTGLLLLLHGGAMIVVFTKYPHLLDEAPGLGDLKTTAPPRQDEYAPPPTMPSTSL 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63865.13965.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMI5_ECTSI1.660e-3075.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..93
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..57
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..35
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 34..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63865contigH-elongata_contig63865:1445..3303 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63865.13965.1mRNA_H-elongata_contig63865.13965.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63865 1097..3462 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63865.13965.1 ID=prot_H-elongata_contig63865.13965.1|Name=mRNA_H-elongata_contig63865.13965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MLCAVDVDVVVVTVDGRAIFIIFIAFLNFALSDAGWLGTATAVLLLLLGG
SMMIVYLKYPDLLDEAPGLGDLKTAPPRREGYAPPPEMPSTSL*
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