mRNA_H-elongata_contig118073.1396.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118073.1396.1
Unique NamemRNA_H-elongata_contig118073.1396.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118073.1396.1 vs. uniprot
Match: D8LR89_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR89_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 9.640e-25
Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:   10 QVEGLKAQMCQALLANLDHDNSCAVFAAADNYQCDELKEQAFSRIVQHFALAARSEGWAALTKGQLSEVRLSD 228
            QVEGLK QMC AL  +L HDN+C+VFA AD++QC  LK +AFS+IVQHFALA RS+GW ALTK QLSEV  SD
Sbjct:  213 QVEGLKDQMCDALSTHLTHDNACSVFALADSHQCHTLKTEAFSKIVQHFALATRSDGWTALTKDQLSEVLSSD 285
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BLAST of mRNA_H-elongata_contig118073.1396.1 vs. uniprot
Match: A0A6H5LQ32_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ32_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.190e-23
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 SMEQVEGLKAQMCQALLANLDHDNSCAVFAAADNYQCDELKEQAFSRIVQHFALAARSEGWAALTKGQLSEV 216
            S  QVEGLK QMC AL  +L HDN+C+VFA AD++QC  LK +AFS+IVQHFALA RS+GW AL K QLSEV
Sbjct:  305 SSRQVEGLKDQMCDALSTHLTHDNACSVFALADSHQCHTLKAEAFSKIVQHFALATRSDGWTALNKDQLSEV 376
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118073.1396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR89_ECTSI9.640e-2569.86BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LQ32_9PHAE1.190e-2368.06BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118073contigH-elongata_contig118073:1175..1405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog2880.D8LR89
KEGG koko:K03361,ko:K10260,ko:K10454,ko:K22071
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00387,M00407
GOsGO:0000003,GO:0000151,GO:0000166,GO:0000278,GO:0000281,GO:0000746,GO:0000747,GO:0000910,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005856,GO:0005938,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007049,GO:0007346,GO:0008092,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0015629,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016905,GO:0017022,GO:0017076,GO:0018107,GO:0018193,GO:0018210,GO:0019005,GO:0019538,GO:0019941,GO:0019953,GO:0022402,GO:0022411,GO:0022414,GO:0030029,GO:0030036,GO:0030163,GO:0030554,GO:0030674,GO:0030863,GO:0030864,GO:0031033,GO:0031035,GO:0031037,GO:0031038,GO:0031145,GO:0031461,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0035639,GO:0036094,GO:0036211,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044703,GO:0044764,GO:0045159,GO:0046777,GO:0050789,GO:0050794,GO:0051301,GO:0051603,GO:0051704,GO:0051726,GO:0060090,GO:0061640,GO:0065007,GO:0070938,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0099568,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903047,GO:1990234
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759,KOG4441@1,KOG4441@2759
Ec32 ortholog descriptionBTB/POZ fold
Ec32 orthologEc-06_003460.1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929688.75327-CDS-H-elongata_contig118073:1174..14021622929688.75327-CDS-H-elongata_contig118073:1174..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118073 1175..1402 -
1691679119.478371-CDS-H-elongata_contig118073:1174..14021691679119.478371-CDS-H-elongata_contig118073:1174..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118073 1175..1402 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929688.7662108-UTR-H-elongata_contig118073:1402..14051622929688.7662108-UTR-H-elongata_contig118073:1402..1405Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118073 1403..1405 -
1691679119.489478-UTR-H-elongata_contig118073:1402..14051691679119.489478-UTR-H-elongata_contig118073:1402..1405Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118073 1403..1405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118073.1396.1prot_H-elongata_contig118073.1396.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118073 1175..1402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118073.1396.1

>prot_H-elongata_contig118073.1396.1 ID=prot_H-elongata_contig118073.1396.1|Name=mRNA_H-elongata_contig118073.1396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MEQVEGLKAQMCQALLANLDHDNSCAVFAAADNYQCDELKEQAFSRIVQH
FALAARSEGWAALTKGQLSEVRLSD*
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mRNA from alignment at H-elongata_contig118073:1175..1405-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118073.1396.1 ID=mRNA_H-elongata_contig118073.1396.1|Name=mRNA_H-elongata_contig118073.1396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig118073:1175..1405- (Himanthalia elongata Himel1 dioecious)
TCGATGGAGCAGGTTGAGGGCCTCAAGGCTCAAATGTGTCAGGCGCTGCT
GGCAAACCTTGATCACGATAACTCGTGCGCCGTGTTCGCCGCGGCGGACA
ACTATCAGTGCGACGAGCTCAAAGAGCAGGCCTTCTCCAGAATCGTGCAG
CACTTCGCCCTTGCGGCGCGCTCCGAGGGGTGGGCTGCTCTAACCAAGGG
ACAGCTGTCGGAGGTGCGATTGAGCGATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig118073:1175..1405-

>mRNA_H-elongata_contig118073.1396.1 ID=mRNA_H-elongata_contig118073.1396.1|Name=mRNA_H-elongata_contig118073.1396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig118073:1175..1405- (Himanthalia elongata Himel1 dioecious)
ATGGAGCAGGTTGAGGGCCTCAAGGCTCAAATGTGTCAGGCGCTGCTGGC
AAACCTTGATCACGATAACTCGTGCGCCGTGTTCGCCGCGGCGGACAACT
ATCAGTGCGACGAGCTCAAAGAGCAGGCCTTCTCCAGAATCGTGCAGCAC
TTCGCCCTTGCGGCGCGCTCCGAGGGGTGGGCTGCTCTAACCAAGGGACA
GCTGTCGGAGGTGCGATTGAGCGATTAAATGGAGCAGGTTGAGGGCCTCA
AGGCTCAAATGTGTCAGGCGCTGCTGGCAAACCTTGATCACGATAACTCG
TGCGCCGTGTTCGCCGCGGCGGACAACTATCAGTGCGACGAGCTCAAAGA
GCAGGCCTTCTCCAGAATCGTGCAGCACTTCGCCCTTGCGGCGCGCTCCG
AGGGGTGGGCTGCTCTAACCAAGGGACAGCTGTCGGAGGTGCGATTGAGC
GATTAA
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