mRNA_H-elongata_contig63828.13957.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63828.13957.1
Unique NamemRNA_H-elongata_contig63828.13957.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Match: A0A6H5KQ98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ98_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.350e-6
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = -1 
Query:    1 CAARGCDVIGLQETKRDGHSEITASGYRVYFSGDCTGVKGK 123
            C+A GCDVIGLQET+R+G   I   GY + +SGD  G K K
Sbjct:  122 CSATGCDVIGLQETQREGQCSIAHDGYVIIWSGDRAGTKDK 162
[Close]
BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.140e-5
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = -1 
Query:    1 CAARGCDVIGLQETKRDGHSEITASGYRVYFSGDCTGVKGK 123
            C+A GCDVIGLQET+R+G   I   GY   +SG   G KGK
Sbjct:    7 CSATGCDVIGLQETRREGQGSIAHDGYVFIWSGARAGTKGK 47
[Close]
BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.080e-5
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = -1 
Query:    1 CAARGCDVIGLQETKRDGHSEITASGYRVYFSGDCTGVKGK 123
            C+A GCDVIGLQET+R+G   I   GY + +SG   G K K
Sbjct:   38 CSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDK 78
[Close]
BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Match: A0A6H5KY87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY87_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.110e-5
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = -1 
Query:    1 CAARGCDVIGLQETKRDGHSEITASGYRVYFSGDCTGVKGK 123
            C+A GCDVIGLQET+R+G   I   GY + +SG   G K K
Sbjct:  136 CSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDK 176
[Close]
BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.300e-5
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = -1 
Query:    1 CAARGCDVIGLQETKRDGHSEITASGYRVYFSGDCTGVKGK 123
            C+A GCDVIGLQET+R+G   I   GY + +SG   G K K
Sbjct:    7 CSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDK 47
[Close]
BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.340e-5
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = -1 
Query:    1 CAARGCDVIGLQETKRDGHSEITASGYRVYFSGDCTGVKGK 123
            C+A GCDVIGLQET+R+G   I   GY + +SG   G K K
Sbjct:  177 CSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDK 217
[Close]
BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Match: A0A6H5K7E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E3_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.380e-5
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = -1 
Query:    1 CAARGCDVIGLQETKRDGHSEITASGYRVYFSGDCTGVKGK 123
            C+A GCDVIGLQET+R+G   I   GY + +SG   G K K
Sbjct:  136 CSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDK 176
[Close]
BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Match: A0A6H5L3J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J0_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.460e-5
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = -1 
Query:    1 CAARGCDVIGLQETKRDGHSEITASGYRVYFSGDCTGVKGK 123
            C+A GCDVIGLQET+R+G   I   GY + +SG   G K K
Sbjct:   17 CSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDK 57
[Close]
BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Match: A0A6H5KTK0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK0_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.530e-5
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = -1 
Query:    1 CAARGCDVIGLQETKRDGHSEITASGYRVYFSGDCTGVKGK 123
            C+A GCDVIGLQET+R+G   I   GY + +SG   G K K
Sbjct:    7 CSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDK 47
[Close]
BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.560e-5
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = -1 
Query:    1 CAARGCDVIGLQETKRDGHSEITASGYRVYFSGDCTGVKGK 123
            C+A GCDVIGLQET+R+G   I   GY + +SG   G K K
Sbjct:    7 CSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDK 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63828.13957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KQ98_9PHAE8.350e-656.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ63_9PHAE2.140e-556.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE6_9PHAE5.080e-553.66Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KY87_9PHAE5.110e-553.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBZ6_9PHAE5.300e-553.66Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L660_9PHAE5.340e-553.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E3_9PHAE5.380e-553.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3J0_9PHAE5.460e-553.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTK0_9PHAE5.530e-553.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JM04_9PHAE5.560e-553.66Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63828contigH-elongata_contig63828:2..307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931021.663337-CDS-H-elongata_contig63828:1..3071622931021.663337-CDS-H-elongata_contig63828:1..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63828 2..307 +
1691679665.6762388-CDS-H-elongata_contig63828:1..3071691679665.6762388-CDS-H-elongata_contig63828:1..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63828 2..307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63828.13957.1prot_H-elongata_contig63828.13957.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63828 2..307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63828.13957.1

>prot_H-elongata_contig63828.13957.1 ID=prot_H-elongata_contig63828.13957.1|Name=mRNA_H-elongata_contig63828.13957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
LPFDSGAVTTEIDPVSRCSYFRMSVPFCLLQSDNITPSRSTGVLCWLRRP
QRSVNTPKIGFQKVHRTFEVFLKRPLEGRGRSSLPRSLVVSNAVGPYTPV
VS
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mRNA from alignment at H-elongata_contig63828:2..307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63828.13957.1 ID=mRNA_H-elongata_contig63828.13957.1|Name=mRNA_H-elongata_contig63828.13957.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig63828:2..307+ (Himanthalia elongata Himel1 dioecious)
CTTCCCTTTGACTCCGGTGCAGTCACCACTGAAATAGACCCGGTATCCAG
ATGCAGTTATTTCAGAATGTCCGTCCCGTTTTGTCTCCTGCAGTCCGATA
ACATCACACCCTCTCGCAGCACAGGGGTACTGTGCTGGCTACGACGACCC
CAAAGGAGCGTAAATACGCCGAAAATAGGGTTCCAGAAGGTACACCGAAC
TTTTGAAGTGTTTCTTAAGCGGCCCCTCGAAGGGCGCGGTCGAAGTAGTC
TCCCACGTTCGTTAGTAGTGTCAAACGCCGTGGGTCCTTACACGCCGGTT
GTTAGC
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Coding sequence (CDS) from alignment at H-elongata_contig63828:2..307+

>mRNA_H-elongata_contig63828.13957.1 ID=mRNA_H-elongata_contig63828.13957.1|Name=mRNA_H-elongata_contig63828.13957.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig63828:2..307+ (Himanthalia elongata Himel1 dioecious)
CTTCCCTTTGACTCCGGTGCAGTCACCACTGAAATAGACCCGGTATCCAG
ATGCAGTTATTTCAGAATGTCCGTCCCGTTTTGTCTCCTGCAGTCCGATA
ACATCACACCCTCTCGCAGCACAGGGGTACTGTGCTGGCTACGACGACCC
CAAAGGAGCGTAAATACGCCGAAAATAGGGTTCCAGAAGGTACACCGAAC
TTTTGAAGTGTTTCTTAAGCGGCCCCTCGAAGGGCGCGGTCGAAGTAGTC
TCCCACGTTCGTTAGTAGTGTCAAACGCCGTGGGTCCTTACACGCCGGTT
GTTAGCCTTCCCTTTGACTCCGGTGCAGTCACCACTGAAATAGACCCGGT
ATCCAGATGCAGTTATTTCAGAATGTCCGTCCCGTTTTGTCTCCTGCAGT
CCGATAACATCACACCCTCTCGCAGCACAGGGGTACTGTGCTGGCTACGA
CGACCCCAAAGGAGCGTAAATACGCCGAAAATAGGGTTCCAGAAGGTACA
CCGAACTTTTGAAGTGTTTCTTAAGCGGCCCCTCGAAGGGCGCGGTCGAA
GTAGTCTCCCACGTTCGTTAGTAGTGTCAAACGCCGTGGGTCCTTACACG
CCGGTTGTTAGC
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