mRNA_H-elongata_contig63826.13956.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63826.13956.1
Unique NamemRNA_H-elongata_contig63826.13956.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Match: A0A6H5K638_9PHAE (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K638_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.300e-49
Identity = 92/100 (92.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:   25 VIENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTLLPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLILSLLLFKP 324
            VIENDK+KI+DVI ELDQKKNQ LQ+TWLKVNRDFGSIFSTLLPGTSAKLQPPEGE+V+AGLEVKVAFG+VWKETLTELSGGQRSLLALSLILSLLLFKP
Sbjct: 1022 VIENDKKKIQDVIGELDQKKNQTLQTTWLKVNRDFGSIFSTLLPGTSAKLQPPEGETVMAGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKP 1121
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BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Match: A0A7S2XXF5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXF5_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.920e-48
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:   22 QVIENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTLLPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLILSLLLFKP 324
            +VIENDK KI+ VI EL+ KKNQALQ+TW+KVNRDFGSIFSTLLPGTSAKL PPEG +VL GLEVKVAFG VWKE+LTELSGGQRSLLALSL+LSLLLFKP
Sbjct:    2 EVIENDKAKIQAVIQELEIKKNQALQTTWVKVNRDFGSIFSTLLPGTSAKLDPPEGGTVLDGLEVKVAFGKVWKESLTELSGGQRSLLALSLVLSLLLFKP 102
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BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Match: A0A7S3XPQ9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPQ9_HETAK)

HSP 1 Score: 166 bits (421), Expect = 5.170e-48
Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = 1 
Query:   22 QVIENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTLLPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLILSLLLFKP 324
            +VIENDKRKI+ VI +LD KKNQALQ+TW+KVNRDFGSIF TLLPGTSAKL PP+G SVL GLEVKVAFGNVWKE+LTELSGGQRSLLALSLILSLLLFKP
Sbjct:  177 EVIENDKRKIESVIADLDVKKNQALQTTWVKVNRDFGSIFGTLLPGTSAKLDPPQGGSVLDGLEVKVAFGNVWKESLTELSGGQRSLLALSLILSLLLFKP 277
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BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Match: A0A836CJV5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV5_9STRA)

HSP 1 Score: 162 bits (410), Expect = 9.990e-47
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   25 VIENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTLLPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLILSLLLFKP 324
            VIE DK KI  VI ELDQKKNQALQ+TW+KVNRDFGSIFSTLLPGTSAKL+PPEG + L GLEVKVAFG+VWKE+LTELSGGQRSLLALSLILSLLLFKP
Sbjct:  151 VIEADKSKIHSVIAELDQKKNQALQTTWVKVNRDFGSIFSTLLPGTSAKLEPPEGGTALDGLEVKVAFGSVWKESLTELSGGQRSLLALSLILSLLLFKP 250
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BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Match: I3SJC5_LOTJA (SMC_N domain-containing protein n=2 Tax=NPAAA clade TaxID=2231382 RepID=I3SJC5_LOTJA)

HSP 1 Score: 151 bits (382), Expect = 1.990e-44
Identity = 79/109 (72.48%), Postives = 90/109 (82.57%), Query Frame = 1 
Query:    7 LPGSAQVIENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTLLPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLILSLLLFKPGEI 333
            L     +IENDK KIK VI+ELD+KK + L  TW KVN DFGSIFSTLLPGT AKL+PPEG S L GLEVKVAFG+VWK++L+ELSGGQRSLLALSLIL+LLLFKP  +
Sbjct:   14 LMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWTKVNSDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVKVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPL 122
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BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Match: A0A836CJQ0_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ0_9STRA)

HSP 1 Score: 162 bits (410), Expect = 4.360e-44
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   25 VIENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTLLPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLILSLLLFKP 324
            VIE DK KI  VI ELDQKKNQALQ+TW+KVNRDFGSIFSTLLPGTSAKL+PPEG + L GLEVKVAFG+VWKE+LTELSGGQRSLLALSLILSLLLFKP
Sbjct: 1029 VIEADKSKIHSVIAELDQKKNQALQTTWVKVNRDFGSIFSTLLPGTSAKLEPPEGGTALDGLEVKVAFGSVWKESLTELSGGQRSLLALSLILSLLLFKP 1128
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BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Match: A0A7S1H4H2_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4H2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.770e-44
Identity = 77/99 (77.78%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:   28 IENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTLLPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLILSLLLFKP 324
            +ENDK+KI+ VI+ELD KK   L+ TW+KVNRDFGS+FSTLLPGTSAKL+PPEG     GLEVKVAFGNVWKE+L+ELSGGQRSL+ALSLILSLLLFKP
Sbjct:    2 VENDKKKIQAVIEELDVKKKTELERTWVKVNRDFGSMFSTLLPGTSAKLEPPEGLEAWEGLEVKVAFGNVWKESLSELSGGQRSLIALSLILSLLLFKP 100
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BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Match: A0A7S3DSR2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DSR2_9STRA)

HSP 1 Score: 152 bits (385), Expect = 8.180e-44
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:   22 QVIENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTLLPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLILSLLLFKP 324
            QV+ENDK+KI+ VI+ELD KK   ++STW KVN DFGSIFSTLLPGTSAKL+PPEG +   GLEVKVAFG+VWKE+L+ELSGGQRSLLALSLILSLLLFKP
Sbjct:   69 QVVENDKKKIQKVIEELDVKKKTEIESTWKKVNGDFGSIFSTLLPGTSAKLEPPEGMAAWEGLEVKVAFGDVWKESLSELSGGQRSLLALSLILSLLLFKP 169
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BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Match: F0ZEF6_DICPU (Structural maintenance of chromosomes protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZEF6_DICPU)

HSP 1 Score: 160 bits (405), Expect = 2.050e-43
Identity = 81/101 (80.20%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:   22 QVIENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTLLPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLILSLLLFKP 324
            ++IENDKRKI+ VI ELD+KKN++L+STW KVN+DFGSIFSTLLPGTSAKL+PPEG++ L GLEVKVAFG+VWKE+L+ELSGGQ+SLLALSLILSLLLFKP
Sbjct: 1004 KIIENDKRKIEQVIKELDEKKNESLRSTWKKVNKDFGSIFSTLLPGTSAKLEPPEGKTELDGLEVKVAFGDVWKESLSELSGGQKSLLALSLILSLLLFKP 1104
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BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Match: A0A097PJ81_SARHE (Structural maintenance of chromosomes protein 2 (Fragment) n=1 Tax=Saruma henryi TaxID=13258 RepID=A0A097PJ81_SARHE)

HSP 1 Score: 150 bits (380), Expect = 3.850e-43
Identity = 77/109 (70.64%), Postives = 92/109 (84.40%), Query Frame = 1 
Query:    7 LPGSAQVIENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTLLPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLILSLLLFKPGEI 333
            L     +IENDK KIK VI+ELD+KK + L  TW+KVN+DFGSIFSTLLPGT AKL+PPEG + L GLEV+VAFG+VWK++L+ELSGGQRSLLALSLIL+LLLFKP  +
Sbjct:  118 LISKKSIIENDKSKIKKVIEELDEKKKETLSVTWVKVNKDFGSIFSTLLPGTMAKLEPPEGCTFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPL 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63826.13956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K638_9PHAE1.300e-4992.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2XXF5_9STRA1.920e-4884.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XPQ9_HETAK5.170e-4886.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CJV5_9STRA9.990e-4786.00P-loop containing nucleoside triphosphate hydrolas... [more]
I3SJC5_LOTJA1.990e-4472.48SMC_N domain-containing protein n=2 Tax=NPAAA clad... [more]
A0A836CJQ0_9STRA4.360e-4486.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S1H4H2_9STRA6.770e-4477.78Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S3DSR2_9STRA8.180e-4478.22Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
F0ZEF6_DICPU2.050e-4380.20Structural maintenance of chromosomes protein n=1 ... [more]
A0A097PJ81_SARHE3.850e-4370.64Structural maintenance of chromosomes protein 2 (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63826contigH-elongata_contig63826:2128..3172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.4e-37
Seed eggNOG ortholog5786.XP_003285790.1
Preferred nameSMC2
KEGG koko:K06674
KEGG Pathwayko04111,map04111
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010032,GO:0010564,GO:0010605,GO:0010948,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034506,GO:0034641,GO:0035327,GO:0035639,GO:0036094,GO:0036292,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0045595,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1990837,GO:2000241,GO:2000242,GO:2000736
EggNOG free text desc.SMC proteins Flexible Hinge Domain
EggNOG OGs3X88X@554915,COG1196@1,KOG0933@2759
COG Functional cat.BD
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931021.6014104-CDS-H-elongata_contig63826:2127..22261622931021.6014104-CDS-H-elongata_contig63826:2127..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63826 2128..2226 +
1691679665.6488178-CDS-H-elongata_contig63826:2127..22261691679665.6488178-CDS-H-elongata_contig63826:2127..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63826 2128..2226 +
1622931021.6160266-CDS-H-elongata_contig63826:2938..31721622931021.6160266-CDS-H-elongata_contig63826:2938..3172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63826 2939..3172 +
1691679665.6609988-CDS-H-elongata_contig63826:2938..31721691679665.6609988-CDS-H-elongata_contig63826:2938..3172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63826 2939..3172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63826.13956.1prot_H-elongata_contig63826.13956.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63826 2128..3172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63826.13956.1

>prot_H-elongata_contig63826.13956.1 ID=prot_H-elongata_contig63826.13956.1|Name=mRNA_H-elongata_contig63826.13956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MALPGSAQVIENDKRKIKDVIDELDQKKNQALQSTWLKVNRDFGSIFSTL
LPGTSAKLQPPEGESVLAGLEVKVAFGNVWKETLTELSGGQRSLLALSLI
LSLLLFKPGEI
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mRNA from alignment at H-elongata_contig63826:2128..3172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63826.13956.1 ID=mRNA_H-elongata_contig63826.13956.1|Name=mRNA_H-elongata_contig63826.13956.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1045bp|location=Sequence derived from alignment at H-elongata_contig63826:2128..3172+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTTACCCGGCTCTGCGCAGGTGATTGAAAATGACAAAAGAAAGAT
CAAGGACGTGATCGACGAGCTCGACCAGAAGAAAAACCAGGCTCTCCAGG
TACACACAACACTATAGCACAGACTATAGCATAGTATAGTGTATTATATT
ATGCTGTATCATAGTCTATTATCGTTTATTTAACTGTTTTGTACCGTGCT
GTTTCGTTAAGCATAGCACTGTACTCGTATACCGTATGATATAAGATATA
CGGGTATTACTTACTGGATGTATTGTACTATGGTGTAGTACTATTATTAT
TTATTATTATTATTATTATTATTTAAAGCATATGAACTCATTCCAACCCT
CCGAACATCCACACCTTCTTAGTACTCTTACGCACAAGATTCCCTCCCAC
TAGACTTTGGTAGTCGTATAATGTGTAGCCAATTATTGTTTGTCAGCGGA
GCCTGGATGGTGCGATGGTTACCCTGTCTGTCGCCGACGCCAGCAGTATC
GCTGTTAGCGGTGTAGACAAACACGCTCACACACCAGTTAGGCGAGGGAA
GTGCTCGATGAAGCAAAGGCTTCGTGGTTCAAGCCCGCGGTCAATCAGCC
AGCTAGCCAGGGCTTATTTTCTCTAGTGTCGATCAATGGGTTTGGACGTA
GCAAGCGCGGTGCAACGGTGGTGACTAAAAGCTAGTATTCTTGTGAAACG
CAGTCTGACCGGTGTGAAACTTGGCATATACCACCTTCCCTCTCCGTTCC
CCCCTTATTTTCTTCACCTCTTTTTTATCGAAACCTCTCTTCTGGGTCCT
TCTGCTGGCAGTCCACCTGGCTCAAGGTGAACCGTGACTTCGGCAGTATC
TTTTCGACCCTCCTCCCTGGGACCTCGGCGAAGCTTCAGCCTCCTGAGGG
GGAGAGCGTGCTGGCGGGGTTGGAGGTGAAGGTGGCCTTCGGCAACGTGT
GGAAGGAGACGCTGACGGAGCTGTCCGGGGGCCAGAGGTCTCTGCTTGCC
CTGTCTCTCATCTTGTCTCTGCTTCTGTTCAAGCCCGGTGAGATA
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Coding sequence (CDS) from alignment at H-elongata_contig63826:2128..3172+

>mRNA_H-elongata_contig63826.13956.1 ID=mRNA_H-elongata_contig63826.13956.1|Name=mRNA_H-elongata_contig63826.13956.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig63826:2128..3172+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTTACCCGGCTCTGCGCAGGTGATTGAAAATGACAAAAGAAAGAT
CAAGGACGTGATCGACGAGCTCGACCAGAAGAAAAACCAGGCTCTCCAGA
TGGCGTTACCCGGCTCTGCGCAGGTGATTGAAAATGACAAAAGAAAGATC
AAGGACGTGATCGACGAGCTCGACCAGAAGAAAAACCAGGCTCTCCAGTC
CACCTGGCTCAAGGTGAACCGTGACTTCGGCAGTATCTTTTCGACCCTCC
TCCCTGGGACCTCGGCGAAGCTTCAGCCTCCTGAGGGGGAGAGCGTGCTG
GCGGGGTTGGAGGTGAAGGTGGCCTTCGGCAACGTGTGGAAGGAGACGCT
GACGGAGCTGTCCGGGGGCCAGAGGTCTCTGCTTGCCCTGTCTCTCATCT
TGTCTCTGCTTCTGTTCAAGCCCGGTGAGATATCCACCTGGCTCAAGGTG
AACCGTGACTTCGGCAGTATCTTTTCGACCCTCCTCCCTGGGACCTCGGC
GAAGCTTCAGCCTCCTGAGGGGGAGAGCGTGCTGGCGGGGTTGGAGGTGA
AGGTGGCCTTCGGCAACGTGTGGAAGGAGACGCTGACGGAGCTGTCCGGG
GGCCAGAGGTCTCTGCTTGCCCTGTCTCTCATCTTGTCTCTGCTTCTGTT
CAAGCCCGGTGAGATA
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