mRNA_H-elongata_contig63795.13953.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63795.13953.1
Unique NamemRNA_H-elongata_contig63795.13953.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Match: D7FJ37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ37_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.770e-52
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 1
Query:   34 MIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPSQMEVRIITSNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVIKEVR 312
            MIDY +EFLARNDVKEVFVFCVSHAKQLE+YLQSS W + MEVRIITSNNCLSAGDALRDIDQRGVVRSDPF+LVSGDVVSNIDL+ VIK+VR
Sbjct:    1 MIDYTMEFLARNDVKEVFVFCVSHAKQLEEYLQSSTWAAHMEVRIITSNNCLSAGDALRDIDQRGVVRSDPFVLVSGDVVSNIDLKSVIKQVR 93          
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Match: A0A835YX04_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX04_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.860e-39
Identity = 66/101 (65.35%), Postives = 81/101 (80.20%), Query Frame = 1
Query:    1 PKVLCPLVNVPMIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPSQMEVRIITSNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVIK 303
            PKVLCPLVN PMIDY LE LA N V+EVFVFCV+HA+QL +YL +  W   MEVR +TS NCLSAGDALR++DQ G+V  DPF+L+ GDVVS +DL+ V++
Sbjct:   43 PKVLCPLVNTPMIDYTLELLASNGVQEVFVFCVNHAQQLSEYLSAGAWGDGMEVRCVTSTNCLSAGDALRELDQMGIVHGDPFVLIHGDVVSTVDLKAVLR 143          
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Match: A0A2V0PMJ8_9CHLO (Translation initiation factor eIF-2B subunit epsilon n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PMJ8_9CHLO)

HSP 1 Score: 124 bits (310), Expect = 6.130e-34
Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 PKVLCPLVNVPMIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPSQMEVRIIT--SNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVIKEVRMR 318
            PKVL PLVN P+I+Y LE+LA N V+E+FVFC +HA Q++ YL  SKW  Q   RIIT  + NCLSAG+ALR +DQ+ +++ D F+LVSGD VSN+DL P +   R R
Sbjct:   36 PKVLLPLVNTPLIEYTLEWLALNKVEEIFVFCCAHADQIKKYLADSKWLRQRSPRIITVVARNCLSAGEALRALDQKDIIKGD-FVLVSGDTVSNVDLGPALAAHRAR 142          
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Match: A0A0D2LRH9_9CHLO (Putative translation initiation factor eIF-2B subunit epsilon n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LRH9_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 4.700e-33
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 PKVLCPLVNVPMIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPSQMEVRIIT--SNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVIKEVRMR 318
            PKVL PLVN P+I+Y LE+LA N V+E++VFC +HA Q++ YL  SKW  Q   RIIT  S NCLS G+ALR +DQ+ +++ D FILVSGD V+N+DL P +   R R
Sbjct:   35 PKVLLPLVNAPLIEYTLEWLALNKVEEIYVFCCAHADQIKKYLADSKWLKQRSPRIITVVSRNCLSVGEALRALDQKDLIKGD-FILVSGDTVANVDLAPALAAHRAR 141          
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Match: A0A699Z023_HAELA (W2 domain-containing protein (Fragment) n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z023_HAELA)

HSP 1 Score: 122 bits (306), Expect = 7.070e-33
Identity = 60/108 (55.56%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 PKVLCPLVNVPMIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPSQMEVRI--ITSNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVIKEVRMR 318
            PKVL PLVNVPMI+Y LE+LA N V+EVFVFC +HA Q++ YL  SKW +  E+ +  + S +CLSAG+ALR I+QR +++SD F+L+SGD V+N++L PV+   R R
Sbjct:   38 PKVLLPLVNVPMIEYTLEWLAMNKVEEVFVFCCAHADQIKRYLSESKWAASREMVVTPVVSTSCLSAGEALRIIEQRDLIKSD-FVLISGDTVANLNLAPVLAAHRAR 144          
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Match: A0A6U1ISH3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A6U1ISH3_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 3.740e-32
Identity = 56/108 (51.85%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 PKVLCPLVNVPMIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPSQ--MEVRIITSNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVIKEVRMR 318
            P VL PLVN P++DY LE+LA NDV+EVF+FC S+A ++++Y+ S+KW S    +V+++ S NC SAG+A+R IDQ+ +++ D FILVSGD +SN+ L+PVI+  + R
Sbjct:   94 PNVLLPLVNAPLLDYTLEWLASNDVEEVFLFCCSNADKVQEYINSTKWGSDPSFDVKVVVSTNCFSAGEAMRLIDQQDIIKDD-FILVSGDCISNMQLKPVIEAHKKR 200          
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Match: A0A7S0RA62_9CHLO (Isoleucyl-tRNA synthetase (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RA62_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 4.230e-32
Identity = 63/108 (58.33%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 PKVLCPLVNVPMIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPS--QMEVRIITSNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVIKEVRMR 318
            PKVL PLVNVPMI+Y LE+LA N V+EVFVFC +HA Q++ YL  SKW    +M V  + S +CLSAG+ALR IDQ+ +++SD F+LVSGD VSN++L PV++  R R
Sbjct:   38 PKVLLPLVNVPMIEYTLEWLAMNKVEEVFVFCCAHADQIKRYLAESKWAHSREMTVTAVVSTSCLSAGEALRLIDQKDIIKSD-FVLVSGDTVSNMNLAPVLEAHRAR 144          
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Match: A0A2R6WUZ5_MARPO (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WUZ5_MARPO)

HSP 1 Score: 125 bits (315), Expect = 2.140e-31
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    1 PKVLCPLVNVPMIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPSQMEVRI--ITSNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVIKE 306
            PKVL PLVNVPMIDY LE+LA   V+EV VFC +HAKQ+  YL+ S+W SQ    +  I S +C+SAGDALR IDQR VVR D FIL+SGD VSN+ L+ V+KE
Sbjct:   42 PKVLLPLVNVPMIDYTLEWLASAGVEEVLVFCCAHAKQVTSYLEHSRWTSQSNFTVTPIESRDCVSAGDALRVIDQRNVVRGD-FILISGDTVSNMSLKEVLKE 144          
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Match: A0A6A7G7T2_9CRUS (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G7T2_9CRUS)

HSP 1 Score: 124 bits (312), Expect = 5.350e-31
Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 PKVLCPLVNVPMIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPSQME--VRIITSNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVIKEVRMR 318
            PKVL PLVNVP++DY LEFLA  +VKE+++ C SH+ Q+E+Y++ S W    E  V ++  +N    GDALR + Q  V+RSDPF+LVS DVV+N+DL+ VIK+ R+R
Sbjct:   40 PKVLMPLVNVPLLDYTLEFLAAGEVKEIYILCHSHSNQIEEYIRESSWSDDDECVVHVLKLDNVYGTGDALRAVHQADVIRSDPFVLVSADVVANVDLQDVIKQHRLR 147          
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Match: A0A7S0ICH0_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0ICH0_MICPS)

HSP 1 Score: 120 bits (300), Expect = 7.590e-31
Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 PKVLCPLVNVPMIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPSQ--MEVRIITSNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVIKEVRMR 318
            PK L PL NVPMI+Y LEFLA N V+EVF+FC +HA QL  Y+++S W S     V  I S NC+SAG+ALR ID + V+RSD FIL+SGD V+N+DLR  ++  R R
Sbjct:   53 PKTLLPLANVPMIEYTLEFLASNGVEEVFIFCCAHADQLTQYIENSAWSSTAGFVVHTIVSTNCISAGEALRLIDHKHVIRSD-FILISGDTVANMDLRRALEAHRER 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63795.13953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ37_ECTSI1.770e-5288.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YX04_9STRA1.860e-3965.35eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A2V0PMJ8_9CHLO6.130e-3456.48Translation initiation factor eIF-2B subunit epsil... [more]
A0A0D2LRH9_9CHLO4.700e-3355.56Putative translation initiation factor eIF-2B subu... [more]
A0A699Z023_HAELA7.070e-3355.56W2 domain-containing protein (Fragment) n=2 Tax=Ha... [more]
A0A6U1ISH3_9CHLO3.740e-3251.85Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S0RA62_9CHLO4.230e-3258.33Isoleucyl-tRNA synthetase (Fragment) n=1 Tax=Chlam... [more]
A0A2R6WUZ5_MARPO2.140e-3162.50eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
A0A6A7G7T2_9CRUS5.350e-3152.78eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A7S0ICH0_MICPS7.590e-3156.48Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63795contigH-elongata_contig63795:2700..3450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue8.6e-40
Seed eggNOG ortholog2880.D7FJ37
Preferred nameEIF2B5
KEGG koko:K03240,ko:K03859
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,ko03013,map00563,map01100,map03013
GOsGO:0000003,GO:0001541,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0008135,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010001,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010941,GO:0010942,GO:0014002,GO:0014003,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0023052,GO:0030154,GO:0030900,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0032045,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034284,GO:0034641,GO:0034645,GO:0034976,GO:0042063,GO:0042221,GO:0042552,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045727,GO:0045948,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048708,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060322,GO:0061458,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1208@1,KOG1461@2759
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931021.36577-CDS-H-elongata_contig63795:2699..28581622931021.36577-CDS-H-elongata_contig63795:2699..2858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63795 2700..2858 -
1691679665.555034-CDS-H-elongata_contig63795:2699..28581691679665.555034-CDS-H-elongata_contig63795:2699..2858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63795 2700..2858 -
1622931021.384223-CDS-H-elongata_contig63795:3291..34501622931021.384223-CDS-H-elongata_contig63795:3291..3450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63795 3292..3450 -
1691679665.566559-CDS-H-elongata_contig63795:3291..34501691679665.566559-CDS-H-elongata_contig63795:3291..3450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63795 3292..3450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63795.13953.1prot_H-elongata_contig63795.13953.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63795 2700..3450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63795.13953.1

>prot_H-elongata_contig63795.13953.1 ID=prot_H-elongata_contig63795.13953.1|Name=mRNA_H-elongata_contig63795.13953.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
PKVLCPLVNVPMIDYALEFLARNDVKEVFVFCVSHAKQLEDYLQSSKWPS
QMEVRIITSNNCLSAGDALRDIDQRGVVRSDPFILVSGDVVSNIDLRPVI
KEVRMR
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mRNA from alignment at H-elongata_contig63795:2700..3450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63795.13953.1 ID=mRNA_H-elongata_contig63795.13953.1|Name=mRNA_H-elongata_contig63795.13953.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=751bp|location=Sequence derived from alignment at H-elongata_contig63795:2700..3450- (Himanthalia elongata Himel1 dioecious)
CCAAAGGTGTTGTGTCCCCTTGTGAACGTGCCGATGATTGACTACGCGCT CGAGTTCCTGGCCCGCAACGATGTGAAGGAGGTCTTCGTCTTCTGTGTGA GCCATGCCAAGCAGTTGGAGGACTATTTGCAGTCGTCTAAATGGCCCAGC CAAATGGAGGTAGGTCAGCTCAGCTCCAAGTAGAGCAAGTTCTGGCTGAA GAGAGAGATAAAGAGATGGGCGCCGTTGCGGAAAACTAGAGGATCGAGAG GATCCTGGAAGTACGCACCATATTCAGCCTGTGTTGAGAGAACGAGCAGG ATAACGCGGGACGGGACGGGACTGCCGAACCCGTCTCGCGAGACCAAATT CTCAGGCGCAAACGGGAACAGAAAAAATAAAATAAAAACTGTTCAGCTGA CGACAAGCAGGAGGAGGCAACCATATCCCGGCTGATTTTTTACTCTGCGA TATGTGATCGCCATACACATGCTGAGGTATGTTGCACTACTGTATATTAT AGTTTACTAAGTATATATATACATATTTACGGTGTTTGTTTCTCTCCCAA TTGGTTGTTTTTATCTTCAACTTTCATTACGTGTGTGGGCAGGTGCGCAT CATCACCTCGAACAACTGCCTCAGCGCTGGCGACGCCCTGCGAGATATCG ACCAGCGAGGCGTCGTGAGGTCGGATCCCTTCATACTCGTCTCTGGAGAC GTGGTTTCCAACATAGATCTCAGGCCCGTCATCAAAGAGGTGCGCATGAG G
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Coding sequence (CDS) from alignment at H-elongata_contig63795:2700..3450-

>mRNA_H-elongata_contig63795.13953.1 ID=mRNA_H-elongata_contig63795.13953.1|Name=mRNA_H-elongata_contig63795.13953.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig63795:2700..3450- (Himanthalia elongata Himel1 dioecious)
CCAAAGGTGTTGTGTCCCCTTGTGAACGTGCCGATGATTGACTACGCGCT
CGAGTTCCTGGCCCGCAACGATGTGAAGGAGGTCTTCGTCTTCTGTGTGA
GCCATGCCAAGCAGTTGGAGGACTATTTGCAGTCGTCTAAATGGCCCAGC
CAAATGGAGCCAAAGGTGTTGTGTCCCCTTGTGAACGTGCCGATGATTGA
CTACGCGCTCGAGTTCCTGGCCCGCAACGATGTGAAGGAGGTCTTCGTCT
TCTGTGTGAGCCATGCCAAGCAGTTGGAGGACTATTTGCAGTCGTCTAAA
TGGCCCAGCCAAATGGAGGTGCGCATCATCACCTCGAACAACTGCCTCAG
CGCTGGCGACGCCCTGCGAGATATCGACCAGCGAGGCGTCGTGAGGTCGG
ATCCCTTCATACTCGTCTCTGGAGACGTGGTTTCCAACATAGATCTCAGG
CCCGTCATCAAAGAGGTGCGCATGAGGGTGCGCATCATCACCTCGAACAA
CTGCCTCAGCGCTGGCGACGCCCTGCGAGATATCGACCAGCGAGGCGTCG
TGAGGTCGGATCCCTTCATACTCGTCTCTGGAGACGTGGTTTCCAACATA
GATCTCAGGCCCGTCATCAAAGAGGTGCGCATGAGG
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