mRNA_H-elongata_contig63763.13947.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63763.13947.1
Unique NamemRNA_H-elongata_contig63763.13947.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63763.13947.1 vs. uniprot
Match: A0A2J6SY04_9HELO (WSC-domain-containing protein n=1 Tax=Hyaloscypha bicolor E TaxID=1095630 RepID=A0A2J6SY04_9HELO)

HSP 1 Score: 48.5 bits (114), Expect = 2.870e-5
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 QCFCGDVTDDPTSLGSATCSMSCTGDSAQNCGGVWALSLYEFTS 132
            QC+C +    P++LG A CSM+CTG+SA+ CGG   +S++  T+
Sbjct: 1472 QCYCSNSMASPSALGQAGCSMACTGNSAETCGGSSRISMFNNTA 1515
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BLAST of mRNA_H-elongata_contig63763.13947.1 vs. uniprot
Match: A0A1Y1U9D4_9TREE (Glycosyl hydrolase family 71-domain-containing protein n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1U9D4_9TREE)

HSP 1 Score: 47.4 bits (111), Expect = 7.360e-5
Identity = 19/41 (46.34%), Postives = 24/41 (58.54%), Query Frame = 1 
Query:    1 QCFCGDVTDDPTSLGSATCSMSCTGDSAQNCGGVWALSLYE 123
            QCFCG+      +     CSM CTGD+ + CGG W L L+E
Sbjct:  340 QCFCGNSVPTAITYNDTLCSMPCTGDATEMCGGEWGLDLFE 380
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63763.13947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2J6SY04_9HELO2.870e-545.45WSC-domain-containing protein n=1 Tax=Hyaloscypha ... [more]
A0A1Y1U9D4_9TREE7.360e-546.34Glycosyl hydrolase family 71-domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63763contigH-elongata_contig63763:868..1002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.5761206-CDS-H-elongata_contig63763:867..10021622931020.5761206-CDS-H-elongata_contig63763:867..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63763 868..1002 -
1691679665.221084-CDS-H-elongata_contig63763:867..10021691679665.221084-CDS-H-elongata_contig63763:867..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63763 868..1002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63763.13947.1prot_H-elongata_contig63763.13947.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63763 868..1002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63763.13947.1

>prot_H-elongata_contig63763.13947.1 ID=prot_H-elongata_contig63763.13947.1|Name=mRNA_H-elongata_contig63763.13947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QCFCGDVTDDPTSLGSATCSMSCTGDSAQNCGGVWALSLYEFTS*
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mRNA from alignment at H-elongata_contig63763:868..1002-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63763.13947.1 ID=mRNA_H-elongata_contig63763.13947.1|Name=mRNA_H-elongata_contig63763.13947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig63763:868..1002- (Himanthalia elongata Himel1 dioecious)
CAGTGCTTTTGTGGAGACGTGACGGACGACCCCACTAGCCTTGGCTCGGC
GACGTGCAGCATGTCCTGCACTGGCGATTCAGCACAAAATTGTGGCGGCG
TCTGGGCTTTATCCTTGTATGAGTTCACATCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig63763:868..1002-

>mRNA_H-elongata_contig63763.13947.1 ID=mRNA_H-elongata_contig63763.13947.1|Name=mRNA_H-elongata_contig63763.13947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig63763:868..1002- (Himanthalia elongata Himel1 dioecious)
CAGTGCTTTTGTGGAGACGTGACGGACGACCCCACTAGCCTTGGCTCGGC
GACGTGCAGCATGTCCTGCACTGGCGATTCAGCACAAAATTGTGGCGGCG
TCTGGGCTTTATCCTTGTATGAGTTCACATCTTGACAGTGCTTTTGTGGA
GACGTGACGGACGACCCCACTAGCCTTGGCTCGGCGACGTGCAGCATGTC
CTGCACTGGCGATTCAGCACAAAATTGTGGCGGCGTCTGGGCTTTATCCT
TGTATGAGTTCACATCTTGA
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