mRNA_H-elongata_contig6355.13932.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6355.13932.1
Unique NamemRNA_H-elongata_contig6355.13932.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6355.13932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6355contigH-elongata_contig6355:4361..8294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2052
Cds size939
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.0044422-UTR-H-elongata_contig6355:4360..44741622931019.0044422-UTR-H-elongata_contig6355:4360..4474Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6355 4361..4474 +
1691679664.4771976-UTR-H-elongata_contig6355:4360..44741691679664.4771976-UTR-H-elongata_contig6355:4360..4474Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6355 4361..4474 +
1622931019.023329-UTR-H-elongata_contig6355:4945..49901622931019.023329-UTR-H-elongata_contig6355:4945..4990Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6355 4946..4990 +
1691679664.4868157-UTR-H-elongata_contig6355:4945..49901691679664.4868157-UTR-H-elongata_contig6355:4945..4990Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6355 4946..4990 +
1622931019.11914-UTR-H-elongata_contig6355:7340..82941622931019.11914-UTR-H-elongata_contig6355:7340..8294Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6355 7341..8294 +
1691679664.5617287-UTR-H-elongata_contig6355:7340..82941691679664.5617287-UTR-H-elongata_contig6355:7340..8294Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6355 7341..8294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.0399177-CDS-H-elongata_contig6355:4990..50661622931019.0399177-CDS-H-elongata_contig6355:4990..5066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6355 4991..5066 +
1691679664.5016484-CDS-H-elongata_contig6355:4990..50661691679664.5016484-CDS-H-elongata_contig6355:4990..5066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6355 4991..5066 +
1622931019.0670726-CDS-H-elongata_contig6355:5537..58961622931019.0670726-CDS-H-elongata_contig6355:5537..5896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6355 5538..5896 +
1691679664.5173469-CDS-H-elongata_contig6355:5537..58961691679664.5173469-CDS-H-elongata_contig6355:5537..5896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6355 5538..5896 +
1622931019.089429-CDS-H-elongata_contig6355:6360..64811622931019.089429-CDS-H-elongata_contig6355:6360..6481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6355 6361..6481 +
1691679664.5296214-CDS-H-elongata_contig6355:6360..64811691679664.5296214-CDS-H-elongata_contig6355:6360..6481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6355 6361..6481 +
1622931019.1059582-CDS-H-elongata_contig6355:6957..73401622931019.1059582-CDS-H-elongata_contig6355:6957..7340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6355 6958..7340 +
1691679664.544032-CDS-H-elongata_contig6355:6957..73401691679664.544032-CDS-H-elongata_contig6355:6957..7340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6355 6958..7340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6355.13932.1prot_H-elongata_contig6355.13932.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6355 4991..7340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6355.13932.1

>prot_H-elongata_contig6355.13932.1 ID=prot_H-elongata_contig6355.13932.1|Name=mRNA_H-elongata_contig6355.13932.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp
MEAVIYCFSLDQATGIHPVEVTTWSCFTESSEEAETVTSDVFSTSCGCST
ATDTTTDIGTSTTTDHITGTSTYTGTITTTDTYLATCEQGESFTIASTVV
PQVVGCYYDTGYTSEDEPLYSETGSAEYGQIVVAALDVGEVDDPNIIWAI
IFYVSETTTSLEAVIYCFSLDQATGIHPVEVTTWSCLTESSEEAEAVTSD
VFSTSCGCSTATDTSNVIDTITTTTSTTDIDTSATTIASTPPLPVPGSPS
PALKVTPSPSSASDMATLSSAVTRPSENIEPEADMGYVSSALSALVTVVV
ALVTIVVLVVWF*
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mRNA from alignment at H-elongata_contig6355:4361..8294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6355.13932.1 ID=mRNA_H-elongata_contig6355.13932.1|Name=mRNA_H-elongata_contig6355.13932.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3934bp|location=Sequence derived from alignment at H-elongata_contig6355:4361..8294+ (Himanthalia elongata Himel1 dioecious)
TATGACACTGGGTATACCAGCGAAGATGAGCCCCTTTACTCCGAGACTGG
TTCGGCCGAGTACGGACAAATCGTCGTGGCTGCCCTTGATGTTGGAGAGG
TTGGCGATCCAAACGTGAGTACGAATCTAAAGGCATTTCATTGGGGCACA
CGCTACTATCTGCACACCACCCTACGATGCTCTCCTCGATTAGAGCGAAC
CGGGTAGGGTAACTGTGGGATATTTACGTAATAAATGTGCGTAGTAAGTA
TTGTTTTGACGTGATGTGCAAACAAAATATAGACGTCATTTTATTTCTTT
CCATGTTTCATTCAGATGACGTGTCGGCGTCGTAGGAAGGCAGTGTGAGC
TTAACCGGGCCCTGTGTAACACGTATGGGGGAATGGGGTAATGTACATGT
TAGAGGATAAGTATTGATACAAGCGAGTCGCGGACAAGGGGAGACATGCG
TATCTACTGACTTTCCGAGCCCTTCTCCCGGACTAAGAAAGGAGCGACAG
AACAGCATGCTACACCCATATGCTATACGGACGTACACTCGTGTTTGCGG
TCCGTGGATTTGCTGTATTTTTTCCCCTTGGCTAGATAATCTGGTTTATT
ATTTTCTATGTTTCGGAGACAACTACATCTATGGAAGCCGTGATATACTG
CTTCTCCCTGGATCAGGCGACAGGCATCCATCCCGTTGAAGTGACAACCT
GGTCCTGTGAGTGATCCTCGCCATCCATCTTTATTTTACGTGTTTGGCTG
ATGAGTTGTAATATGTTTGTTTCTGGTTATCGTCGTTTCCCTGTCTCAAA
TATCCTCCAGCGTTTGGTTATCCTATGCCCTCCCGTAAGATGTCTACCTC
GAGTTGAGCTTCGGATGGGCTACTCTAAGGAAAACCTTTCCCCGCGTTTC
AGGGTGTGGGATAAGGGCATTAACAGTAAGTGGGTTGGATTAGCTATCCA
TACTTTAGGTAAGGATATGGTACCAATCCATATATGCCTCCTAAGGCGTA
TTTATCTCATTTTCAACGTTACATCCAACGGTAGCGCTTACATTCCGCGT
CGCGGAATCCACCCGATATACTAACATAACTCATCCTTCTTTTGCGTGTA
CCCCCTGACCACGATTTAAACCTTTAAACCCCGCCTTGACAACTTCTTTG
GCGTTGTTAATCTACCATCGAGCCAAGGTTTTACGGAATCCTCGGAGGAA
GCGGAGACCGTCACTAGCGATGTGTTCTCGACCTCATGCGGCTGCTCAAC
CGCGACTGACACCACCACTGACATCGGTACCAGCACTACCACCGATCACA
TTACGGGCACTAGCACTTACACCGGGACTATAACTACCACCGATACCTAC
TTGGCAACCTGCGAACAAGGGGAATCGTTTACCATTGCCTCCACCGTGGT
GCCCCAAGTGGTGGGTTGCTACTATGACACTGGGTATACCAGCGAAGATG
AGCCCCTTTACTCCGAGACTGGTTCGGCCGAGTACGGACAAATCGTCGTG
GCCGCCCTTGATGTTGGAGAGGTTGACGATCCAAACGTGAGTACGAATCT
AACGACATTTCATTGGAACACACGCTACTATCTGCACACCACCCTACGAT
GCCCTCCTCGATTAGAGTGAACCGGGTGGGGTAACTGTGGGATATTTACG
TAATAAATGTGCGTAGTAAGTATTGTTTTGACGTGAGGTGCGAACAGAAT
ATAGACGTCATTTTATTTCGTTCCATGTTTCATTCAGATGACGTGTCGCC
GTCGTTGTAGGCAGCTTAACCGGGCCCTGTGTAACACGTATGGGGAAATG
GGGGAATGTACATGGTAGAGGATAAGTATTGGTACAAGCGAGTCGCGGAC
AAGGGGAGACATGCGTATCTACTGACTTTCCGAGCCCTTCTCCCGGACGA
AGAAAGTGGCGACAGAACAGCATGCTAAACCCATATGTTATACGGACGTA
TACTCGTGCTGGCGGTCCGTGGATTTGCTATATTTTATCCCCTTGGCTAG
ATAATCTGGGCTATTATTTTCTATGTTTCGGAGACAACTACATCTTTGGA
AGCCGTGATATACTGCTTCTCCCTGGATCAGGCGACAGGCATCCATCCCG
TTGAAGTGACAACCTGGTCCTGTGAGTGATCCTCGCAAAATCCTCGCCAT
CCATCTTTATTTTACTTTTTTGGCTGATGAGTTGTAATATGTTTGATTCT
GGTTATCGTCGTTTCCCTGCCTCAAATATCCTCTAGCGTTTGGTTGTCCC
ATGCCCTCCCGTAAGACGTCTACCTCAAGTGGAGCTTCGGAGGGGCTGCT
CCAAGGAAAATCTTTCCCTGCGTTTGCGGATGTGGGATAAGGGCTTTTGG
AAGAAGGGGGTTGGATTAGCTATCCCTAATTTAGGGAAGGATATGATACC
ATGCCACATATGCCTCGTATCTATCTGATTTTCAGCGTTACATCCAACGG
TAGCGCTTATATTCCGCGTTGTGGAACCCCCCCCGATATGCTAACCCAAC
TCATCCTTATTTTGCGTGCGCCCCCTGCCCACGGCCTCAATCTTTATCCC
TCGCCTTGACACCTTATTTCTCGTTATTAATCTACCATCGAGCCAAGGTT
TGACGGAATCCTCGGAAGAGGCGGAGGCCGTCACTAGCGATGTCTTCTCG
ACCTCGTGCGGCTGCTCGACCGCGACTGACACCTCAAACGTCATCGACAC
CATTACCACTACTACCTCCACAACTGATATCGATACCAGTGCGACCACCA
TCGCGAGTACGCCTCCTTTGCCTGTCCCGGGGTCACCATCCCCTGCCTTG
AAAGTTACGCCGTCCCCATCCTCTGCCTCGGACATGGCAACGTTGTCATC
AGCTGTTACTAGACCATCGGAGAATATCGAACCAGAAGCGGACATGGGAT
ATGTGTCGTCAGCCTTGTCGGCTCTTGTGACCGTTGTAGTGGCCTTAGTG
ACCATAGTGGTCCTTGTTGTCTGGTTCTGATCTCGATTATAATTTGCAAC
ATGACTGATGACGACAACTAAGGATTTCGATCAATAAAGCAGCTCAATTA
ATTCACCATCACATGCGAAAGGGCTCGCAAATTATTTTATACGTAAATCA
AATCATGTTTCCGGTGAAGCGTCGGTCCGTAGGAATATTATGAATTGTTC
ACATAAGGGAAATCTCTATCCTAGCCACCATATAATATCCACGTAATATG
GGGCAATCATAGTCTCGGTAACCACCCTTTTTGTTTCAGCACCAGAATAG
AGGATAGCGTCGTCGATTTGGCTGTACACCGTGCATACGATAGGGGGAAA
TATTTCTGGCCATTTTACGTGGAATTGGGATTGGTTATTTCAAGAGGAAG
AGGACGGGGAGGAAGGCGGGGGGACTTAAGTCTCGAAACGACAAACGTGC
CGTTGTTTTGCGTAGCAGTCGTTTTGAATCAATATTGATTTAAATATGAT
TTGCTGGGGTTGGACATAGATTAGTGGTGATGCTGACGCCAATATCGCAG
CATTGAAGAAGAGATAGCTTTAAATCTAAATAACCTGCGCAACCATTTGT
ACAATCGTCTATAATTCGCATCTCGGCGAACAATATGCTTCTGCAGAGAG
CGTAAGGATGTGAATAAGGAAAAATCGGCCAATTATCTGACAAAGTTTTA
GATTGCTGAGCTTACATTGCATTAAAAAACGCTGGGGTGAACGTGGAAAT
ATGGGCTGGCCCCTTAAGGCCCTCAGCGGGAATGGAAGCGTTACACTACG
CATGGTTTGTAACCTAGCAACTAGATTAAATCTCGGTGGGTGGAGAATGA
GCAGACTGGTGGCGCGGGATGGGACAGCCAAACCCACTCCACGAGGCTTA
AAATTTCAGGCGGGAACGGGGCTAGGTACAAATCATTTTCTTTTTTCAGT
TGATCACGAGAAGGCATTGTAACCATATCCGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig6355:4361..8294+

>mRNA_H-elongata_contig6355.13932.1 ID=mRNA_H-elongata_contig6355.13932.1|Name=mRNA_H-elongata_contig6355.13932.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig6355:4361..8294+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGCCGTGATATACTGCTTCTCCCTGGATCAGGCGACAGGCATCCA
TCCCGTTGAAGTGACAACCTGGTCCTATGGAAGCCGTGATATACTGCTTC
TCCCTGGATCAGGCGACAGGCATCCATCCCGTTGAAGTGACAACCTGGTC
CTGTTTTACGGAATCCTCGGAGGAAGCGGAGACCGTCACTAGCGATGTGT
TCTCGACCTCATGCGGCTGCTCAACCGCGACTGACACCACCACTGACATC
GGTACCAGCACTACCACCGATCACATTACGGGCACTAGCACTTACACCGG
GACTATAACTACCACCGATACCTACTTGGCAACCTGCGAACAAGGGGAAT
CGTTTACCATTGCCTCCACCGTGGTGCCCCAAGTGGTGGGTTGCTACTAT
GACACTGGGTATACCAGCGAAGATGAGCCCCTTTACTCCGAGACTGGTTC
GGCCGAGTACGGACAAATCGTCGTGGCCGCCCTTGATGTTGGAGAGGTTG
ACGATCCAAACGTTTTACGGAATCCTCGGAGGAAGCGGAGACCGTCACTA
GCGATGTGTTCTCGACCTCATGCGGCTGCTCAACCGCGACTGACACCACC
ACTGACATCGGTACCAGCACTACCACCGATCACATTACGGGCACTAGCAC
TTACACCGGGACTATAACTACCACCGATACCTACTTGGCAACCTGCGAAC
AAGGGGAATCGTTTACCATTGCCTCCACCGTGGTGCCCCAAGTGGTGGGT
TGCTACTATGACACTGGGTATACCAGCGAAGATGAGCCCCTTTACTCCGA
GACTGGTTCGGCCGAGTACGGACAAATCGTCGTGGCCGCCCTTGATGTTG
GAGAGGTTGACGATCCAAACATAATCTGGGCTATTATTTTCTATGTTTCG
GAGACAACTACATCTTTGGAAGCCGTGATATACTGCTTCTCCCTGGATCA
GGCGACAGGCATCCATCCCGTTGAAGTGACAACCTGGTCCTATAATCTGG
GCTATTATTTTCTATGTTTCGGAGACAACTACATCTTTGGAAGCCGTGAT
ATACTGCTTCTCCCTGGATCAGGCGACAGGCATCCATCCCGTTGAAGTGA
CAACCTGGTCCTGTTTGACGGAATCCTCGGAAGAGGCGGAGGCCGTCACT
AGCGATGTCTTCTCGACCTCGTGCGGCTGCTCGACCGCGACTGACACCTC
AAACGTCATCGACACCATTACCACTACTACCTCCACAACTGATATCGATA
CCAGTGCGACCACCATCGCGAGTACGCCTCCTTTGCCTGTCCCGGGGTCA
CCATCCCCTGCCTTGAAAGTTACGCCGTCCCCATCCTCTGCCTCGGACAT
GGCAACGTTGTCATCAGCTGTTACTAGACCATCGGAGAATATCGAACCAG
AAGCGGACATGGGATATGTGTCGTCAGCCTTGTCGGCTCTTGTGACCGTT
GTAGTGGCCTTAGTGACCATAGTGGTCCTTGTTGTCTGGTTCTGAGTTTG
ACGGAATCCTCGGAAGAGGCGGAGGCCGTCACTAGCGATGTCTTCTCGAC
CTCGTGCGGCTGCTCGACCGCGACTGACACCTCAAACGTCATCGACACCA
TTACCACTACTACCTCCACAACTGATATCGATACCAGTGCGACCACCATC
GCGAGTACGCCTCCTTTGCCTGTCCCGGGGTCACCATCCCCTGCCTTGAA
AGTTACGCCGTCCCCATCCTCTGCCTCGGACATGGCAACGTTGTCATCAG
CTGTTACTAGACCATCGGAGAATATCGAACCAGAAGCGGACATGGGATAT
GTGTCGTCAGCCTTGTCGGCTCTTGTGACCGTTGTAGTGGCCTTAGTGAC
CATAGTGGTCCTTGTTGTCTGGTTCTGA
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