prot_H-elongata_contig63546.13931.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63546.13931.1
Unique Nameprot_H-elongata_contig63546.13931.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
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BLAST of mRNA_H-elongata_contig63546.13931.1 vs. uniprot
Match: D7FS92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS92_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 5.650e-11
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0 
Query:    6 QLYLVYFIRSGIGDFGLSRMAAESPELVALELSGCLRVTSSGAGSLSALRKLERVDLSRCR 66
            +L  V   RSGIG+ GLSR++A SP L  L+L GC+R+T SGA +LSAL+ LE +DLS CR
Sbjct:  273 KLERVCLARSGIGNEGLSRLSAGSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLSNCR 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63546.13931.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS92_ECTSI5.650e-1157.38Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 5..66
e-value: 3.2E-9
score: 38.4
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 17..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63546contigH-elongata_contig63546:2933..3133 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63546.13931.1mRNA_H-elongata_contig63546.13931.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63546 2933..3133 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63546.13931.1 ID=prot_H-elongata_contig63546.13931.1|Name=mRNA_H-elongata_contig63546.13931.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
SLAPNQLYLVYFIRSGIGDFGLSRMAAESPELVALELSGCLRVTSSGAGS
LSALRKLERVDLSRCR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf