mRNA_H-elongata_contig6349.13926.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6349.13926.1
Unique NamemRNA_H-elongata_contig6349.13926.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6349.13926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6349contigH-elongata_contig6349:6835..9550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2716
Cds size1416
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6349.13926.1prot_H-elongata_contig6349.13926.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6349 6901..8316 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.2564685-UTR-H-elongata_contig6349:6834..69001622931018.2564685-UTR-H-elongata_contig6349:6834..6900Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6349 6835..6900 +
1691679664.1725535-UTR-H-elongata_contig6349:6834..69001691679664.1725535-UTR-H-elongata_contig6349:6834..6900Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6349 6835..6900 +
1622931018.2947953-UTR-H-elongata_contig6349:8316..95501622931018.2947953-UTR-H-elongata_contig6349:8316..9550Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6349 8317..9550 +
1691679664.1880198-UTR-H-elongata_contig6349:8316..95501691679664.1880198-UTR-H-elongata_contig6349:8316..9550Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6349 8317..9550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.2793891-CDS-H-elongata_contig6349:6900..83161622931018.2793891-CDS-H-elongata_contig6349:6900..8316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6349 6901..8316 +
1691679664.1804993-CDS-H-elongata_contig6349:6900..83161691679664.1804993-CDS-H-elongata_contig6349:6900..8316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6349 6901..8316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6349.13926.1

>prot_H-elongata_contig6349.13926.1 ID=prot_H-elongata_contig6349.13926.1|Name=mRNA_H-elongata_contig6349.13926.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=472bp
MIDIQKKMCVSDGCSTTASYGKSDSTKREYCAKHALEGMINVYKGKMCAS
DGCSKTPNYGQAGSTRREYCAEHALEGMVNVKKRTMCAGDGCSKTPNYGQ
AGSTKREYCAGHALDGMIDVRKMKMCAGDGCTKQPHFGRAGSTKREYCAK
HALEGMINADKRKMCADNGCSKRAYYGDVGSTKPEYCAKHALEGMIDVQK
KMCASDGCSKTPSYGKAGSTKREYCAKHALEGMINVIKRKMCAGDKFSKT
PNYRQAGSTKREYCARYASEGMANVKKRKMCAGNGCSKTPNYGKAGSMKR
EYCAKHTLKGMVSFTSLVCADDSCSKVPACGKAGSIKQDYCAQHALDGRV
NVVKKIYAGDRCSKAASYGNARSKKREHCAEHSFKDMVHILPKTCAGDRF
SKQAIYGKAESTKREHCAEHAFERTISFTTGELCADDTCFNVQEYGKAGS
TKQEKCAEHALEGKVNVSITT*
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mRNA from alignment at H-elongata_contig6349:6835..9550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6349.13926.1 ID=mRNA_H-elongata_contig6349.13926.1|Name=mRNA_H-elongata_contig6349.13926.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2716bp|location=Sequence derived from alignment at H-elongata_contig6349:6835..9550+ (Himanthalia elongata Himel1 dioecious)
CGACCAACCTACGGAGAGGTCGGAAGCACGAAACCGGTGTATTGCGCTAA
GCATGCCTTGGAGGGGATGATTGACATTCAAAAGAAAATGTGTGTCAGTG
ATGGGTGTTCTACGACTGCAAGCTACGGAAAGTCTGACAGCACGAAACGG
GAGTACTGCGCGAAGCATGCCTTGGAGGGGATGATTAACGTTTATAAGGG
GAAAATGTGTGCCAGTGATGGATGTTCTAAAACACCAAACTACGGACAGG
CTGGAAGCACGAGACGGGAGTACTGCGCTGAGCATGCTTTGGAGGGCATG
GTCAATGTTAAGAAGAGAACAATGTGTGCAGGTGATGGATGTTCTAAAAC
ACCAAACTACGGACAGGCTGGAAGTACGAAACGGGAGTACTGCGCTGGGC
ATGCCTTGGATGGGATGATCGACGTTAGGAAGATGAAAATGTGTGCCGGT
GATGGATGTACTAAGCAACCACACTTCGGAAGGGCTGGTAGCACGAAACG
GGAGTACTGCGCTAAACATGCCTTGGAGGGGATGATTAACGCCGATAAGA
GGAAAATGTGTGCCGATAATGGGTGTTCTAAACGAGCATACTACGGAGAC
GTCGGAAGCACGAAACCGGAGTATTGCGCTAAGCATGCCTTGGAGGGAAT
GATTGATGTTCAAAAGAAAATGTGTGCCAGTGATGGATGTTCGAAAACAC
CAAGCTACGGAAAGGCTGGCAGCACGAAACGGGAGTACTGCGCTAAACAT
GCCTTGGAGGGGATGATTAACGTTATAAAGAGGAAAATGTGTGCCGGTGA
TAAATTTTCTAAAACACCAAACTACAGACAGGCTGGAAGCACAAAACGGG
AGTACTGCGCTAGGTATGCCTCGGAGGGGATGGCCAATGTTAAGAAGAGG
AAAATGTGTGCCGGTAATGGATGTTCTAAAACACCTAACTACGGGAAGGC
AGGAAGCATGAAGCGAGAGTACTGCGCTAAGCATACCTTGAAGGGAATGG
TCTCTTTTACGAGCCTAGTGTGCGCCGACGATAGTTGTTCCAAGGTACCA
GCTTGCGGTAAGGCTGGCAGCATAAAACAAGATTACTGCGCTCAGCATGC
GTTGGACGGGAGGGTCAATGTTGTGAAGAAAATCTATGCCGGCGATCGAT
GCTCTAAGGCTGCGAGCTACGGAAACGCCAGAAGTAAGAAGCGAGAGCAC
TGCGCTGAGCATTCCTTCAAGGATATGGTCCATATTTTGCCCAAAACTTG
CGCCGGTGATAGATTCTCTAAGCAAGCGATCTATGGAAAGGCCGAAAGCA
CGAAGAGAGAGCACTGTGCTGAGCATGCGTTCGAGAGGACGATTAGCTTT
ACTACGGGGGAATTGTGTGCAGATGATACATGCTTTAATGTACAAGAGTA
CGGCAAGGCTGGCAGCACGAAACAGGAGAAATGCGCTGAGCATGCGTTAG
AAGGAAAGGTCAATGTTTCGATCACTACGTGAGCCGGTGATGGAAGTTCT
AAGCTAGCGAGCTACGGAAAGACCGAGAGCAAGAAGGAGGATTACTCCGC
AAAAGATATTATGGATGGCATCATGGGTATCGCTCTCACAACAGTCCATG
TTGAAAGACGCGGGTGTCGAAGATCTCTTCAACGCCAGTATCCGTGTCGA
AAAGATGTAAAATCGATAATTACGTTGGAGCCCCCTTTTCCGCTACTGCA
TTCGGTGGTGTTTTGGTGAAGTCAGAGGTATCAGTAAAATCCACGTAGGT
ATTTTTTGCAAAATATTTAGTAGACCGTTTCCTAGCCAATGGGAGCGGTG
GCTTTGCGCTCGGTCGATTTCATGCCTCAAAATATTATTTGTTTAGTATA
TTCAGTTGACCACAGGCAGAAGGCGACAAAACCCAGTTGATCCTTAGTCT
CCTATATGTTATATCGAAACACATATTTTGAGGCTGAAAAACTATTTTTC
ATGATATGGTGAACGAGAAGGATCTTGATTTCTATGTCAGAGCATTGCAA
CGATTAGCGTGCAATTCAAGGCGAGATAATATGAGCCACAAATGCCAAAT
CCACATGGAGGGGCCGAACGCCTTCGGTGATCAACTTTGTCTCTTGGATG
ATTGAGGAGATGAAAAAGTTCACTTCCTAAAAAAAACCCTATCAAAGCTA
TGATGTTTATCATGGCGACAATGAGCCGGAGAAGCTTCATTACTGATATA
GATTGTGCCCATAACCGCACCGTGCAATGACCTTCTTTATCTTGCTTCAG
TAGATCATGTGTGGGAAAATAGAGGCCTACAATGAACGGTCCATGTGGTT
ACCTGAATAGGCTTTTCTTTACTTGAGCTACCTTGAGGCTGGCTCGGTGC
CGGTGGACCCTCGGTGGTAAATCGCATCGTTACGGAATTGCTGGGAGTAA
GCACCATATTCAGCCTTGGTTGGGAGAAAAAAAAAGGCTTACGCGGGACG
GAATTGCGGAACCCGTCTCGCGAGTACGATCTTTAGGCGCGAACGAGGAC
AGGGAAAATTTATTTCCCTGTTCAGATGACCACGAGATGAACGCAACCAA
ATCCGGTTGATATTATATTCTGAAAGTGTGAGCAACAACATGTCTGGGTG
TGCATATATAGCATGGTATGAATGAGCCGTATACATGTGGTTGTCACCCT
GCTCGTGCTCGTGGTCATTAAACGAAGTAAACGATTCTTCCATGTCCCCT
CTAGATATTGAACAGC
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Coding sequence (CDS) from alignment at H-elongata_contig6349:6835..9550+

>mRNA_H-elongata_contig6349.13926.1 ID=mRNA_H-elongata_contig6349.13926.1|Name=mRNA_H-elongata_contig6349.13926.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2832bp|location=Sequence derived from alignment at H-elongata_contig6349:6835..9550+ (Himanthalia elongata Himel1 dioecious)
ATGATTGACATTCAAAAGAAAATGTGTGTCAGTGATGGGTGTTCTACGAC
TGCAAGCTACGGAAAGTCTGACAGCACGAAACGGGAGTACTGCGCGAAGC
ATGCCTTGGAGGGGATGATTAACGTTTATAAGGGGAAAATGTGTGCCAGT
GATGGATGTTCTAAAACACCAAACTACGGACAGGCTGGAAGCACGAGACG
GGAGTACTGCGCTGAGCATGCTTTGGAGGGCATGGTCAATGTTAAGAAGA
GAACAATGTGTGCAGGTGATGGATGTTCTAAAACACCAAACTACGGACAG
GCTGGAAGTACGAAACGGGAGTACTGCGCTGGGCATGCCTTGGATGGGAT
GATCGACGTTAGGAAGATGAAAATGTGTGCCGGTGATGGATGTACTAAGC
AACCACACTTCGGAAGGGCTGGTAGCACGAAACGGGAGTACTGCGCTAAA
CATGCCTTGGAGGGGATGATTAACGCCGATAAGAGGAAAATGTGTGCCGA
TAATGGGTGTTCTAAACGAGCATACTACGGAGACGTCGGAAGCACGAAAC
CGGAGTATTGCGCTAAGCATGCCTTGGAGGGAATGATTGATGTTCAAAAG
AAAATGTGTGCCAGTGATGGATGTTCGAAAACACCAAGCTACGGAAAGGC
TGGCAGCACGAAACGGGAGTACTGCGCTAAACATGCCTTGGAGGGGATGA
TTAACGTTATAAAGAGGAAAATGTGTGCCGGTGATAAATTTTCTAAAACA
CCAAACTACAGACAGGCTGGAAGCACAAAACGGGAGTACTGCGCTAGGTA
TGCCTCGGAGGGGATGGCCAATGTTAAGAAGAGGAAAATGTGTGCCGGTA
ATGGATGTTCTAAAACACCTAACTACGGGAAGGCAGGAAGCATGAAGCGA
GAGTACTGCGCTAAGCATACCTTGAAGGGAATGGTCTCTTTTACGAGCCT
AGTGTGCGCCGACGATAGTTGTTCCAAGGTACCAGCTTGCGGTAAGGCTG
GCAGCATAAAACAAGATTACTGCGCTCAGCATGCGTTGGACGGGAGGGTC
AATGTTGTGAAGAAAATCTATGCCGGCGATCGATGCTCTAAGGCTGCGAG
CTACGGAAACGCCAGAAGTAAGAAGCGAGAGCACTGCGCTGAGCATTCCT
TCAAGGATATGGTCCATATTTTGCCCAAAACTTGCGCCGGTGATAGATTC
TCTAAGCAAGCGATCTATGGAAAGGCCGAAAGCACGAAGAGAGAGCACTG
TGCTGAGCATGCGTTCGAGAGGACGATTAGCTTTACTACGGGGGAATTGT
GTGCAGATGATACATGCTTTAATGTACAAGAGTACGGCAAGGCTGGCAGC
ACGAAACAGGAGAAATGCGCTGAGCATGCGTTAGAAGGAAAGGTCAATGT
TTCGATCACTACGTGAATGATTGACATTCAAAAGAAAATGTGTGTCAGTG
ATGGGTGTTCTACGACTGCAAGCTACGGAAAGTCTGACAGCACGAAACGG
GAGTACTGCGCGAAGCATGCCTTGGAGGGGATGATTAACGTTTATAAGGG
GAAAATGTGTGCCAGTGATGGATGTTCTAAAACACCAAACTACGGACAGG
CTGGAAGCACGAGACGGGAGTACTGCGCTGAGCATGCTTTGGAGGGCATG
GTCAATGTTAAGAAGAGAACAATGTGTGCAGGTGATGGATGTTCTAAAAC
ACCAAACTACGGACAGGCTGGAAGTACGAAACGGGAGTACTGCGCTGGGC
ATGCCTTGGATGGGATGATCGACGTTAGGAAGATGAAAATGTGTGCCGGT
GATGGATGTACTAAGCAACCACACTTCGGAAGGGCTGGTAGCACGAAACG
GGAGTACTGCGCTAAACATGCCTTGGAGGGGATGATTAACGCCGATAAGA
GGAAAATGTGTGCCGATAATGGGTGTTCTAAACGAGCATACTACGGAGAC
GTCGGAAGCACGAAACCGGAGTATTGCGCTAAGCATGCCTTGGAGGGAAT
GATTGATGTTCAAAAGAAAATGTGTGCCAGTGATGGATGTTCGAAAACAC
CAAGCTACGGAAAGGCTGGCAGCACGAAACGGGAGTACTGCGCTAAACAT
GCCTTGGAGGGGATGATTAACGTTATAAAGAGGAAAATGTGTGCCGGTGA
TAAATTTTCTAAAACACCAAACTACAGACAGGCTGGAAGCACAAAACGGG
AGTACTGCGCTAGGTATGCCTCGGAGGGGATGGCCAATGTTAAGAAGAGG
AAAATGTGTGCCGGTAATGGATGTTCTAAAACACCTAACTACGGGAAGGC
AGGAAGCATGAAGCGAGAGTACTGCGCTAAGCATACCTTGAAGGGAATGG
TCTCTTTTACGAGCCTAGTGTGCGCCGACGATAGTTGTTCCAAGGTACCA
GCTTGCGGTAAGGCTGGCAGCATAAAACAAGATTACTGCGCTCAGCATGC
GTTGGACGGGAGGGTCAATGTTGTGAAGAAAATCTATGCCGGCGATCGAT
GCTCTAAGGCTGCGAGCTACGGAAACGCCAGAAGTAAGAAGCGAGAGCAC
TGCGCTGAGCATTCCTTCAAGGATATGGTCCATATTTTGCCCAAAACTTG
CGCCGGTGATAGATTCTCTAAGCAAGCGATCTATGGAAAGGCCGAAAGCA
CGAAGAGAGAGCACTGTGCTGAGCATGCGTTCGAGAGGACGATTAGCTTT
ACTACGGGGGAATTGTGTGCAGATGATACATGCTTTAATGTACAAGAGTA
CGGCAAGGCTGGCAGCACGAAACAGGAGAAATGCGCTGAGCATGCGTTAG
AAGGAAAGGTCAATGTTTCGATCACTACGTGA
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