mRNA_H-elongata_contig6349.13926.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig6349.13926.1
Unique Name	mRNA_H-elongata_contig6349.13926.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig6349.13926.1 vs. uniprot

BLAST of mRNA_H-elongata_contig6349.13926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig6349	contig	H-elongata_contig6349:6835..9550 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	2716
Cds size	1416
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig6349.13926.1	prot_H-elongata_contig6349.13926.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig6349 6901..8316 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931018.2564685-UTR-H-elongata_contig6349:6834..6900	1622931018.2564685-UTR-H-elongata_contig6349:6834..6900	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig6349 6835..6900 +
1691679664.1725535-UTR-H-elongata_contig6349:6834..6900	1691679664.1725535-UTR-H-elongata_contig6349:6834..6900	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig6349 6835..6900 +
1622931018.2947953-UTR-H-elongata_contig6349:8316..9550	1622931018.2947953-UTR-H-elongata_contig6349:8316..9550	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig6349 8317..9550 +
1691679664.1880198-UTR-H-elongata_contig6349:8316..9550	1691679664.1880198-UTR-H-elongata_contig6349:8316..9550	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig6349 8317..9550 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931018.2793891-CDS-H-elongata_contig6349:6900..8316	1622931018.2793891-CDS-H-elongata_contig6349:6900..8316	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig6349 6901..8316 +
1691679664.1804993-CDS-H-elongata_contig6349:6900..8316	1691679664.1804993-CDS-H-elongata_contig6349:6900..8316	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig6349 6901..8316 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig6349:6835..9550+
coding sequence from alignment at H-elongata_contig6349:6835..9550+

protein sequence of mRNA_H-elongata_contig6349.13926.1

>prot_H-elongata_contig6349.13926.1 ID=prot_H-elongata_contig6349.13926.1|Name=mRNA_H-elongata_contig6349.13926.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=472bp
MIDIQKKMCVSDGCSTTASYGKSDSTKREYCAKHALEGMINVYKGKMCAS
DGCSKTPNYGQAGSTRREYCAEHALEGMVNVKKRTMCAGDGCSKTPNYGQ
AGSTKREYCAGHALDGMIDVRKMKMCAGDGCTKQPHFGRAGSTKREYCAK
HALEGMINADKRKMCADNGCSKRAYYGDVGSTKPEYCAKHALEGMIDVQK
KMCASDGCSKTPSYGKAGSTKREYCAKHALEGMINVIKRKMCAGDKFSKT
PNYRQAGSTKREYCARYASEGMANVKKRKMCAGNGCSKTPNYGKAGSMKR
EYCAKHTLKGMVSFTSLVCADDSCSKVPACGKAGSIKQDYCAQHALDGRV
NVVKKIYAGDRCSKAASYGNARSKKREHCAEHSFKDMVHILPKTCAGDRF
SKQAIYGKAESTKREHCAEHAFERTISFTTGELCADDTCFNVQEYGKAGS
TKQEKCAEHALEGKVNVSITT*

mRNA from alignment at H-elongata_contig6349:6835..9550+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig6349.13926.1 ID=mRNA_H-elongata_contig6349.13926.1|Name=mRNA_H-elongata_contig6349.13926.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2716bp|location=Sequence derived from alignment at H-elongata_contig6349:6835..9550+ (Himanthalia elongata Himel1 dioecious)
CGACCAACCTACGGAGAGGTCGGAAGCACGAAACCGGTGTATTGCGCTAA
GCATGCCTTGGAGGGGATGATTGACATTCAAAAGAAAATGTGTGTCAGTG
ATGGGTGTTCTACGACTGCAAGCTACGGAAAGTCTGACAGCACGAAACGG
GAGTACTGCGCGAAGCATGCCTTGGAGGGGATGATTAACGTTTATAAGGG
GAAAATGTGTGCCAGTGATGGATGTTCTAAAACACCAAACTACGGACAGG
CTGGAAGCACGAGACGGGAGTACTGCGCTGAGCATGCTTTGGAGGGCATG
GTCAATGTTAAGAAGAGAACAATGTGTGCAGGTGATGGATGTTCTAAAAC
ACCAAACTACGGACAGGCTGGAAGTACGAAACGGGAGTACTGCGCTGGGC
ATGCCTTGGATGGGATGATCGACGTTAGGAAGATGAAAATGTGTGCCGGT
GATGGATGTACTAAGCAACCACACTTCGGAAGGGCTGGTAGCACGAAACG
GGAGTACTGCGCTAAACATGCCTTGGAGGGGATGATTAACGCCGATAAGA
GGAAAATGTGTGCCGATAATGGGTGTTCTAAACGAGCATACTACGGAGAC
GTCGGAAGCACGAAACCGGAGTATTGCGCTAAGCATGCCTTGGAGGGAAT
GATTGATGTTCAAAAGAAAATGTGTGCCAGTGATGGATGTTCGAAAACAC
CAAGCTACGGAAAGGCTGGCAGCACGAAACGGGAGTACTGCGCTAAACAT
GCCTTGGAGGGGATGATTAACGTTATAAAGAGGAAAATGTGTGCCGGTGA
TAAATTTTCTAAAACACCAAACTACAGACAGGCTGGAAGCACAAAACGGG
AGTACTGCGCTAGGTATGCCTCGGAGGGGATGGCCAATGTTAAGAAGAGG
AAAATGTGTGCCGGTAATGGATGTTCTAAAACACCTAACTACGGGAAGGC
AGGAAGCATGAAGCGAGAGTACTGCGCTAAGCATACCTTGAAGGGAATGG
TCTCTTTTACGAGCCTAGTGTGCGCCGACGATAGTTGTTCCAAGGTACCA
GCTTGCGGTAAGGCTGGCAGCATAAAACAAGATTACTGCGCTCAGCATGC
GTTGGACGGGAGGGTCAATGTTGTGAAGAAAATCTATGCCGGCGATCGAT
GCTCTAAGGCTGCGAGCTACGGAAACGCCAGAAGTAAGAAGCGAGAGCAC
TGCGCTGAGCATTCCTTCAAGGATATGGTCCATATTTTGCCCAAAACTTG
CGCCGGTGATAGATTCTCTAAGCAAGCGATCTATGGAAAGGCCGAAAGCA
CGAAGAGAGAGCACTGTGCTGAGCATGCGTTCGAGAGGACGATTAGCTTT
ACTACGGGGGAATTGTGTGCAGATGATACATGCTTTAATGTACAAGAGTA
CGGCAAGGCTGGCAGCACGAAACAGGAGAAATGCGCTGAGCATGCGTTAG
AAGGAAAGGTCAATGTTTCGATCACTACGTGAGCCGGTGATGGAAGTTCT
AAGCTAGCGAGCTACGGAAAGACCGAGAGCAAGAAGGAGGATTACTCCGC
AAAAGATATTATGGATGGCATCATGGGTATCGCTCTCACAACAGTCCATG
TTGAAAGACGCGGGTGTCGAAGATCTCTTCAACGCCAGTATCCGTGTCGA
AAAGATGTAAAATCGATAATTACGTTGGAGCCCCCTTTTCCGCTACTGCA
TTCGGTGGTGTTTTGGTGAAGTCAGAGGTATCAGTAAAATCCACGTAGGT
ATTTTTTGCAAAATATTTAGTAGACCGTTTCCTAGCCAATGGGAGCGGTG
GCTTTGCGCTCGGTCGATTTCATGCCTCAAAATATTATTTGTTTAGTATA
TTCAGTTGACCACAGGCAGAAGGCGACAAAACCCAGTTGATCCTTAGTCT
CCTATATGTTATATCGAAACACATATTTTGAGGCTGAAAAACTATTTTTC
ATGATATGGTGAACGAGAAGGATCTTGATTTCTATGTCAGAGCATTGCAA
CGATTAGCGTGCAATTCAAGGCGAGATAATATGAGCCACAAATGCCAAAT
CCACATGGAGGGGCCGAACGCCTTCGGTGATCAACTTTGTCTCTTGGATG
ATTGAGGAGATGAAAAAGTTCACTTCCTAAAAAAAACCCTATCAAAGCTA
TGATGTTTATCATGGCGACAATGAGCCGGAGAAGCTTCATTACTGATATA
GATTGTGCCCATAACCGCACCGTGCAATGACCTTCTTTATCTTGCTTCAG
TAGATCATGTGTGGGAAAATAGAGGCCTACAATGAACGGTCCATGTGGTT
ACCTGAATAGGCTTTTCTTTACTTGAGCTACCTTGAGGCTGGCTCGGTGC
CGGTGGACCCTCGGTGGTAAATCGCATCGTTACGGAATTGCTGGGAGTAA
GCACCATATTCAGCCTTGGTTGGGAGAAAAAAAAAGGCTTACGCGGGACG
GAATTGCGGAACCCGTCTCGCGAGTACGATCTTTAGGCGCGAACGAGGAC
AGGGAAAATTTATTTCCCTGTTCAGATGACCACGAGATGAACGCAACCAA
ATCCGGTTGATATTATATTCTGAAAGTGTGAGCAACAACATGTCTGGGTG
TGCATATATAGCATGGTATGAATGAGCCGTATACATGTGGTTGTCACCCT
GCTCGTGCTCGTGGTCATTAAACGAAGTAAACGATTCTTCCATGTCCCCT
CTAGATATTGAACAGC

Coding sequence (CDS) from alignment at H-elongata_contig6349:6835..9550+

>mRNA_H-elongata_contig6349.13926.1 ID=mRNA_H-elongata_contig6349.13926.1|Name=mRNA_H-elongata_contig6349.13926.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2832bp|location=Sequence derived from alignment at H-elongata_contig6349:6835..9550+ (Himanthalia elongata Himel1 dioecious)
ATGATTGACATTCAAAAGAAAATGTGTGTCAGTGATGGGTGTTCTACGAC
TGCAAGCTACGGAAAGTCTGACAGCACGAAACGGGAGTACTGCGCGAAGC
ATGCCTTGGAGGGGATGATTAACGTTTATAAGGGGAAAATGTGTGCCAGT
GATGGATGTTCTAAAACACCAAACTACGGACAGGCTGGAAGCACGAGACG
GGAGTACTGCGCTGAGCATGCTTTGGAGGGCATGGTCAATGTTAAGAAGA
GAACAATGTGTGCAGGTGATGGATGTTCTAAAACACCAAACTACGGACAG
GCTGGAAGTACGAAACGGGAGTACTGCGCTGGGCATGCCTTGGATGGGAT
GATCGACGTTAGGAAGATGAAAATGTGTGCCGGTGATGGATGTACTAAGC
AACCACACTTCGGAAGGGCTGGTAGCACGAAACGGGAGTACTGCGCTAAA
CATGCCTTGGAGGGGATGATTAACGCCGATAAGAGGAAAATGTGTGCCGA
TAATGGGTGTTCTAAACGAGCATACTACGGAGACGTCGGAAGCACGAAAC
CGGAGTATTGCGCTAAGCATGCCTTGGAGGGAATGATTGATGTTCAAAAG
AAAATGTGTGCCAGTGATGGATGTTCGAAAACACCAAGCTACGGAAAGGC
TGGCAGCACGAAACGGGAGTACTGCGCTAAACATGCCTTGGAGGGGATGA
TTAACGTTATAAAGAGGAAAATGTGTGCCGGTGATAAATTTTCTAAAACA
CCAAACTACAGACAGGCTGGAAGCACAAAACGGGAGTACTGCGCTAGGTA
TGCCTCGGAGGGGATGGCCAATGTTAAGAAGAGGAAAATGTGTGCCGGTA
ATGGATGTTCTAAAACACCTAACTACGGGAAGGCAGGAAGCATGAAGCGA
GAGTACTGCGCTAAGCATACCTTGAAGGGAATGGTCTCTTTTACGAGCCT
AGTGTGCGCCGACGATAGTTGTTCCAAGGTACCAGCTTGCGGTAAGGCTG
GCAGCATAAAACAAGATTACTGCGCTCAGCATGCGTTGGACGGGAGGGTC
AATGTTGTGAAGAAAATCTATGCCGGCGATCGATGCTCTAAGGCTGCGAG
CTACGGAAACGCCAGAAGTAAGAAGCGAGAGCACTGCGCTGAGCATTCCT
TCAAGGATATGGTCCATATTTTGCCCAAAACTTGCGCCGGTGATAGATTC
TCTAAGCAAGCGATCTATGGAAAGGCCGAAAGCACGAAGAGAGAGCACTG
TGCTGAGCATGCGTTCGAGAGGACGATTAGCTTTACTACGGGGGAATTGT
GTGCAGATGATACATGCTTTAATGTACAAGAGTACGGCAAGGCTGGCAGC
ACGAAACAGGAGAAATGCGCTGAGCATGCGTTAGAAGGAAAGGTCAATGT
TTCGATCACTACGTGAATGATTGACATTCAAAAGAAAATGTGTGTCAGTG
ATGGGTGTTCTACGACTGCAAGCTACGGAAAGTCTGACAGCACGAAACGG
GAGTACTGCGCGAAGCATGCCTTGGAGGGGATGATTAACGTTTATAAGGG
GAAAATGTGTGCCAGTGATGGATGTTCTAAAACACCAAACTACGGACAGG
CTGGAAGCACGAGACGGGAGTACTGCGCTGAGCATGCTTTGGAGGGCATG
GTCAATGTTAAGAAGAGAACAATGTGTGCAGGTGATGGATGTTCTAAAAC
ACCAAACTACGGACAGGCTGGAAGTACGAAACGGGAGTACTGCGCTGGGC
ATGCCTTGGATGGGATGATCGACGTTAGGAAGATGAAAATGTGTGCCGGT
GATGGATGTACTAAGCAACCACACTTCGGAAGGGCTGGTAGCACGAAACG
GGAGTACTGCGCTAAACATGCCTTGGAGGGGATGATTAACGCCGATAAGA
GGAAAATGTGTGCCGATAATGGGTGTTCTAAACGAGCATACTACGGAGAC
GTCGGAAGCACGAAACCGGAGTATTGCGCTAAGCATGCCTTGGAGGGAAT
GATTGATGTTCAAAAGAAAATGTGTGCCAGTGATGGATGTTCGAAAACAC
CAAGCTACGGAAAGGCTGGCAGCACGAAACGGGAGTACTGCGCTAAACAT
GCCTTGGAGGGGATGATTAACGTTATAAAGAGGAAAATGTGTGCCGGTGA
TAAATTTTCTAAAACACCAAACTACAGACAGGCTGGAAGCACAAAACGGG
AGTACTGCGCTAGGTATGCCTCGGAGGGGATGGCCAATGTTAAGAAGAGG
AAAATGTGTGCCGGTAATGGATGTTCTAAAACACCTAACTACGGGAAGGC
AGGAAGCATGAAGCGAGAGTACTGCGCTAAGCATACCTTGAAGGGAATGG
TCTCTTTTACGAGCCTAGTGTGCGCCGACGATAGTTGTTCCAAGGTACCA
GCTTGCGGTAAGGCTGGCAGCATAAAACAAGATTACTGCGCTCAGCATGC
GTTGGACGGGAGGGTCAATGTTGTGAAGAAAATCTATGCCGGCGATCGAT
GCTCTAAGGCTGCGAGCTACGGAAACGCCAGAAGTAAGAAGCGAGAGCAC
TGCGCTGAGCATTCCTTCAAGGATATGGTCCATATTTTGCCCAAAACTTG
CGCCGGTGATAGATTCTCTAAGCAAGCGATCTATGGAAAGGCCGAAAGCA
CGAAGAGAGAGCACTGTGCTGAGCATGCGTTCGAGAGGACGATTAGCTTT
ACTACGGGGGAATTGTGTGCAGATGATACATGCTTTAATGTACAAGAGTA
CGGCAAGGCTGGCAGCACGAAACAGGAGAAATGCGCTGAGCATGCGTTAG
AAGGAAAGGTCAATGTTTCGATCACTACGTGA