mRNA_H-elongata_contig63488.13925.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Match: D8LD80_ECTSI (KH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD80_ECTSI) HSP 1 Score: 189 bits (481), Expect = 2.920e-58 Identity = 96/105 (91.43%), Postives = 97/105 (92.38%), Query Frame = 1
Query: 103 RPDFPALTAREMGGGKDDFRSIRCPPHRLTPLRNSWENIVTPSVEHMKLQIRRVEFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAAALLRLGGL 417
RPDFPALTAREMGGGKDDFR IRCPPHRLTPLRN WENIVTP+VEHMKLQIR FNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDA ALLRL L
Sbjct: 48 RPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNCWENIVTPTVEHMKLQIR---FNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDL 149
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Match: A0A6T5QRH5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QRH5_HETAK) HSP 1 Score: 147 bits (370), Expect = 1.230e-41 Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = 1
Query: 79 ETADGAAPRPDFPALTAREMGGGKDDFRSIRCPPHRLTPLRNSWENIVTPSVEHMKLQIRRVEFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAAALLRLGGL 417
ET RP+FPAL+A+EM GG ++FR IR P HR TPLR WENI+ P VEHMKLQIR FN KTR+VE+K+S+HTED A+QK ADFIQAFM+GFEVQDA ALLRL L
Sbjct: 27 ETEQSGTIRPNFPALSAQEMAGGIEEFRRIRVPAHRYTPLREQWENIMQPVVEHMKLQIR---FNPKTRSVEMKTSEHTEDVGAIQKAADFIQAFMMGFEVQDAVALLRLEDL 136
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Match: A0A835ZET5_9STRA (RNA-binding protein PNO1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET5_9STRA) HSP 1 Score: 145 bits (367), Expect = 4.350e-41 Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1
Query: 91 GAAPRPDFPALTAREM-GGGKDDFRSIRCPPHRLTPLRNSWENIVTPSVEHMKLQIRRVEFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAAALLRLGGL 417
G A +P+FP L+A+++ G K D R IRCPPHRLTPLR SWE+IV P VEHMKLQIR FN K RNVELK+S+ TED SALQ++ADF+QAFMLGFEVQDA ALLRL L
Sbjct: 38 GGAMKPNFPPLSAQQLRAGAKSDIRRIRCPPHRLTPLRASWEHIVAPVVEHMKLQIR---FNPKARNVELKASQFTEDPSALQRSADFVQAFMLGFEVQDAVALLRLEDL 144
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Match: A0A2D4BJV4_PYTIN (RNA-binding protein PNO1-like protein n=4 Tax=Pythium TaxID=4797 RepID=A0A2D4BJV4_PYTIN) HSP 1 Score: 144 bits (362), Expect = 2.210e-40 Identity = 77/133 (57.89%), Postives = 96/133 (72.18%), Query Frame = 1
Query: 19 ATGVVEAAKGDVEMDMEESGETADGAAPRPDFPALTAREMGGGKDDFRSIRCPPHRLTPLRNSWENIVTPSVEHMKLQIRRVEFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAAALLRLGGL 417
A + + A+ D MDME D AA RP+FPAL+A+E GGK+DFR +R P HR TPL+N W N++TP V+H+KLQIR N KTR +ELK+S TED+ ALQK ADF+QA+M+GFEVQDA ALLRL L
Sbjct: 15 AQAIAQQAQHDHAMDMEAD----DAAAMRPNFPALSAQEAEGGKNDFRRVRVPAHRYTPLKNDWPNLMTPIVDHLKLQIR---MNTKTRCIELKNSPFTEDSGALQKAADFVQAYMMGFEVQDAVALLRLEDL 140
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Match: H3G8F2_PHYRM (KH domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3G8F2_PHYRM) HSP 1 Score: 142 bits (357), Expect = 9.040e-40 Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 1
Query: 52 VEMDMEESGETADGAAPRPDFPALTAREMGGGKDDFRSIRCPPHRLTPLRNSWENIVTPSVEHMKLQIRRVEFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAAALLRLGGL 417
V+M++EE G RP+FPAL+A++ GGK+DFR +R P HR TPL+N W NI+ P VEH+KLQIR N KTR +ELK+S HT DA ALQK ADF+QA+M+GFEVQDA ALLRL L
Sbjct: 16 VDMEIEEDG------VVRPNFPALSAQQQAGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIR---MNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDL 128
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Match: G4Z4N5_PHYSP (KH domain-containing protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=G4Z4N5_PHYSP) HSP 1 Score: 142 bits (358), Expect = 9.370e-40 Identity = 74/123 (60.16%), Postives = 89/123 (72.36%), Query Frame = 1
Query: 49 DVEMDMEESGETADGAAPRPDFPALTAREMGGGKDDFRSIRCPPHRLTPLRNSWENIVTPSVEHMKLQIRRVEFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAAALLRLGGL 417
D MD EE+ D RP+FPAL+A++ GGK+DFR +R P HR TPL+N W NI+ P VEH+KLQIR N KTR +ELK+S HT DA ALQK ADF+QA+M+GFEVQDA ALLRL L
Sbjct: 27 DTMMDTEEN----DSGVVRPNFPALSAQQQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIR---MNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDL 142
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Match: A0A6A3YBU7_9STRA (KH domain-containing protein n=6 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3YBU7_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.290e-39 Identity = 73/121 (60.33%), Postives = 87/121 (71.90%), Query Frame = 1
Query: 55 EMDMEESGETADGAAPRPDFPALTAREMGGGKDDFRSIRCPPHRLTPLRNSWENIVTPSVEHMKLQIRRVEFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAAALLRLGGL 417
E DM E E + RP FPAL+A++ GGK+DFR +R P HR TPL+N W NI+ P VEH+KLQIR N KTR +ELK+S HT DA ALQK ADF+QA+M+GFEVQDA ALLRL L
Sbjct: 24 ETDMMEVEEVEEQGVVRPHFPALSAQQQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPVVEHLKLQIR---MNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDL 141
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Match: A0A2P4X7L0_9STRA (RNA-binding protein PNO1-like protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7L0_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.540e-39 Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 1
Query: 52 VEMDMEESGETADGAAPRPDFPALTAREMGGGKDDFRSIRCPPHRLTPLRNSWENIVTPSVEHMKLQIRRVEFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAAALLRLGGL 417
++MD EE RP+FPAL+A++ GGK+DFR +R P HR TPL+N W NI+ P VEH+KLQIR N KTR +ELK+S HT DA ALQK ADF+QA+M+GFEVQDA ALLRL L
Sbjct: 27 MDMDTEED-------VVRPNFPALSAQQQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIR---MNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDL 138
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Match: K3WKW4_GLOUD (KH domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WKW4_GLOUD) HSP 1 Score: 138 bits (348), Expect = 3.000e-38 Identity = 68/105 (64.76%), Postives = 82/105 (78.10%), Query Frame = 1
Query: 103 RPDFPALTAREMGGGKDDFRSIRCPPHRLTPLRNSWENIVTPSVEHMKLQIRRVEFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAAALLRLGGL 417
RP FPAL+A+E GGK+DFR +R P HR TPL+N W NI+ P VEH++LQIR N KTR +ELK+S+HT DA ALQK ADF+QA+M+GFEVQDA ALLRL L
Sbjct: 41 RPSFPALSAQEQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLRLQIR---MNTKTRCIELKNSEHTIDAGALQKAADFVQAYMMGFEVQDAVALLRLEDL 142
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Match: A0A3M6VD79_9STRA (KH domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VD79_9STRA) HSP 1 Score: 138 bits (347), Expect = 4.250e-38 Identity = 70/122 (57.38%), Postives = 90/122 (73.77%), Query Frame = 1
Query: 52 VEMDMEESGETADGAAPRPDFPALTAREMGGGKDDFRSIRCPPHRLTPLRNSWENIVTPSVEHMKLQIRRVEFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAAALLRLGGL 417
+++++EE+G RP+FPAL+A++ GGK+DFR +R P HR TPL+N W NI+ P VEH+KLQIR N KTR +ELK+S HT D ALQK ADF+QA+M+GFEVQDA ALLRL L
Sbjct: 30 MDVEIEENG------VVRPNFPALSAQQQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIR---MNTKTRCIELKNSPHTTDVGALQKAADFVQAYMMGFEVQDAVALLRLEDL 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63488.13925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63488.13925.1 >prot_H-elongata_contig63488.13925.1 ID=prot_H-elongata_contig63488.13925.1|Name=mRNA_H-elongata_contig63488.13925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp QVEAAAATGVVEAAKGDVEMDMEESGETADGAAPRPDFPALTAREMGGGKback to top mRNA from alignment at H-elongata_contig63488:27..1765- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63488.13925.1 ID=mRNA_H-elongata_contig63488.13925.1|Name=mRNA_H-elongata_contig63488.13925.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1739bp|location=Sequence derived from alignment at H-elongata_contig63488:27..1765- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63488:27..1765- >mRNA_H-elongata_contig63488.13925.1 ID=mRNA_H-elongata_contig63488.13925.1|Name=mRNA_H-elongata_contig63488.13925.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig63488:27..1765- (Himanthalia elongata Himel1 dioecious)back to top |