mRNA_H-elongata_contig63483.13924.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63483.13924.1
Unique NamemRNA_H-elongata_contig63483.13924.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Match: A0A6H5KT74_9PHAE (PaO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT74_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.730e-22
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   46 SGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTMKSFGRESTLGRDSRSTVRYTFEAPCILRQRSDGKKEGEFSFGAALHCIPLGKGRSRLLFK 330
            +G   K  A P    ++ EGP APS  GF  +V  + FG      R   ++ RY  +AP ++R RS+GKKEGE  FGAALHCIPLGKGRSRLLFK
Sbjct:    6 AGATKKTPAPPTSMKIIEEGPDAPSSTGFSCIVKSRGFG-----SRKKMTSTRYRMQAPGVIRVRSEGKKEGEPLFGAALHCIPLGKGRSRLLFK 95          
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Match: A0A7S2XLJ2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLJ2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.790e-18
Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 SLLDPAHICISHDATSGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTMKSFGRESTLGRDSRSTVRYT--FEAPCILRQRSDGKKEGEFSFGAALHCIPLGKGRSRLLFKA 333
            +L+DPAH+ ISHD T GGG ++NA P  ++++ +     +P+GF         GR    G D+++   +   +EAP I+RQ +   K G+F FGAALHC+PL  G+SRLLF+A
Sbjct:  285 NLIDPAHVPISHDRTPGGGKRENAQP--YEMILDKDSVNNPQGFT--------GRFRNAGPDAQNATWFELQYEAPGIIRQSA---KNGKFQFGAALHCMPLSLGKSRLLFRA 384          
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Match: A0A7S2P399_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2P399_9DINO)

HSP 1 Score: 79.3 bits (194), Expect = 1.700e-15
Identity = 46/110 (41.82%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    1 SLLDPAHICISHDATSGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTMKSFGRESTLGRDSRSTVRYTFEAPCILRQRSDGKKEGEFSFGAALHCIPLGKGRSRLLFK 330
            +LLDPAHI +SHD T GGG + NA P++ +V+     +   +G      +K        G           EAP I+R RS     G+  FGAALHC+PLG+GRSRLLF+
Sbjct:   82 NLLDPAHIPVSHDGTPGGGKRANAQPLEMEVLET--TSQGVRGRFRNTRVKG-------GAGEEPWTDIALEAPGIVRWRS---ARGKILFGAALHCMPLGRGRSRLLFR 179          
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Match: A0A836C985_9STRA (Rieske domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C985_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.510e-15
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1
Query:    1 SLLDPAHICISHDATSGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTMKSFGRESTLGRDSRSTVRYTFEAPCILRQRSD--GKKEGE--FSFGAALHCIPL------------------GKGRSRLLF 327
            +L+DPAHI ISH  T GGG +DNA P++FD+ ++   A    GF + +T             S+ T    F+APC++R R++  GKKEG+    FGAALHC+                    G+GRSR+LF
Sbjct:  235 NLIDPAHIPISHHNTEGGGNRDNAKPLNFDIDKDSFGAA---GFKAKIT----------NLFSKGTTAIQFDAPCVIRLRTETPGKKEGQPGLVFGAALHCVAXXXXXXXXXXXXXXXXXXXGQGRSRILF 352          
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Match: A0A8J6CDC8_DIALT (Rieske domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDC8_DIALT)

HSP 1 Score: 78.2 bits (191), Expect = 1.640e-14
Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 SLLDPAHICISHDATSGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTMKSFGRESTLGRDSRSTVRYTFEAPCILRQRSDGKKEGEFSFGAALHCIPLGKGRSRLLFK 330
            +LLDPAHI +SHD T GGG ++NA P++ +V          +G        S G      R     +   F AP ++ QR+ G   G   FGAALHC+PLG  RSRLLF+
Sbjct:  225 NLLDPAHIPVSHDRTPGGGKRENAQPLEMEVYDGSVDRTGFRGRYRNTRASSGGAT----RAPPGWIDVRFAAPGVIYQRNAG---GPIRFGAALHCMPLGASRSRLLFR 327          
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Match: A0A7S2I1U6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I1U6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.820e-14
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 SLLDPAHICISHDATSGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTMKSFGRESTLGRDSRST--VRYTFEAPCILRQRSDGK-KEGEFSFGAALHCIPLGKGRSRLLFK 330
            +L+DPAHI ISHDATSGGG ++NA   +  +V +G  + S  GF         GR  T  +  ++   + + +EAP I+RQ+   +  +    FGAALHC+PL  GRSRLLF+
Sbjct:  257 NLVDPAHIPISHDATSGGGKRENAQAYEM-IVDQG--SMSSNGFT--------GRYRTAEQREKNGDFIEFQYEAPGIIRQKGMPRGNDSPLRFGAALHCMPLTLGRSRLLFR 358          
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Match: A0A813H4Z8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H4Z8_POLGL)

HSP 1 Score: 77.8 bits (190), Expect = 2.180e-14
Identity = 46/110 (41.82%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 SLLDPAHICISHDATSGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTMKSFGRESTLGRDSRSTVRYTFEAPCILRQRSDGKKEGEFSFGAALHCIPLGKGRSRLLFK 330
            +L+DPAHI ISHDAT GGG ++NA  ++  V      +    GF         G ++        T    FEAP I+R RS   + G   FG ALHC+PL  GRSRLLF+
Sbjct:  166 NLIDPAHIPISHDATPGGGKRENAQALEMQVDAS---SVGVSGFTGRYRATRLGAKTGKPDPWTETA---FEAPGIVRYRS---QRGNIVFGGALHCVPLAPGRSRLLFR 266          
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Match: A0A7S1ZT10_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZT10_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.270e-14
Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    1 SLLDPAHICISHDATSGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTMKSFGRESTLGRDSRST--VRYTFEAPCILRQRSDGK-KEGEFSFGAALHCIPLGKGRSRLLFKA 333
            +L+DPAHI ISHDAT GGG ++NA   +  V R   ++  P GF         GR  T  +  +    +   ++AP I+RQ+   +  +    FGAALHC+PL  GRSRLLF+A
Sbjct:  270 NLIDPAHIPISHDATPGGGKRENAQAYEMIVDR---NSIGPDGFT--------GRYRTASQREKGDDFIEVQYQAPGIIRQKGMPRGNDSPLRFGAALHCMPLTLGRSRLLFRA 372          
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Match: A0A813LLZ5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LLZ5_POLGL)

HSP 1 Score: 77.8 bits (190), Expect = 2.450e-14
Identity = 46/110 (41.82%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 SLLDPAHICISHDATSGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTMKSFGRESTLGRDSRSTVRYTFEAPCILRQRSDGKKEGEFSFGAALHCIPLGKGRSRLLFK 330
            +L+DPAHI ISHDAT GGG ++NA  ++  V      +    GF         G ++        T    FEAP I+R RS   + G   FG ALHC+PL  GRSRLLF+
Sbjct:  779 NLIDPAHIPISHDATPGGGKRENAQALEMQVDAS---SVGVSGFTGRYRATRLGAKTGKPDPWTETA---FEAPGIVRYRS---QRGNIVFGGALHCVPLAPGRSRLLFR 879          
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Match: A0A7S1VJZ6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJZ6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.260e-12
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 SLLDPAHICISHDATSGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTMKSFGRESTLGRDSRSTVRYTFEAPCILRQRSDGK-KEGEFSFGAALHCIPLGKGRSRLLFKASNE 342
            +L DPAH+ ISHD+T GGG ++ A   D  + ++   + S  GF            S L           FEAP I+R + +GK       F AALHC+PLG GRSRLLF+  N+
Sbjct:  184 NLADPAHVDISHDSTPGGGKRERAKAYDMKIDQD---SISSDGFTGKFRQNENLPYSDL----------VFEAPGIVRNKFEGKIGSSTVRFEAALHCMPLGLGRSRLLFRVFNK 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63483.13924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KT74_9PHAE5.730e-2251.58PaO domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2XLJ2_9STRA3.790e-1842.48Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2P399_9DINO1.700e-1541.82Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A836C985_9STRA3.510e-1538.17Rieske domain-containing protein n=1 Tax=Tribonema... [more]
A0A8J6CDC8_DIALT1.640e-1440.91Rieske domain-containing protein n=1 Tax=Diacronem... [more]
A0A7S2I1U6_9STRA1.820e-1442.48Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A813H4Z8_POLGL2.180e-1441.82Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S1ZT10_9STRA2.270e-1441.23Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A813LLZ5_POLGL2.450e-1441.82Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S1VJZ6_9STRA1.260e-1239.13Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63483contigH-elongata_contig63483:368..872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue6.1e-07
Seed eggNOG ortholog4096.XP_009770743.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0015031,GO:0015833,GO:0031967,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598
EggNOG free text desc.Pheophorbide a oxygenase
EggNOG OGs2QT2X@2759,37MMJ@33090,3GCHT@35493,44IBC@71274,COG4638@1
COG Functional cat.P
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.1023307-CDS-H-elongata_contig63483:367..4571622931018.1023307-CDS-H-elongata_contig63483:367..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63483 368..457 +
1691679664.1258519-CDS-H-elongata_contig63483:367..4571691679664.1258519-CDS-H-elongata_contig63483:367..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63483 368..457 +
1622931018.1199336-CDS-H-elongata_contig63483:617..8721622931018.1199336-CDS-H-elongata_contig63483:617..872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63483 618..872 +
1691679664.1361597-CDS-H-elongata_contig63483:617..8721691679664.1361597-CDS-H-elongata_contig63483:617..872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63483 618..872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63483.13924.1prot_H-elongata_contig63483.13924.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63483 368..872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63483.13924.1

>prot_H-elongata_contig63483.13924.1 ID=prot_H-elongata_contig63483.13924.1|Name=mRNA_H-elongata_contig63483.13924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
SLLDPAHICISHDATSGGGTKDNAGPIDFDVVREGPHAPSPKGFVSLVTM
KSFGRESTLGRDSRSTVRYTFEAPCILRQRSDGKKEGEFSFGAALHCIPL
GKGRSRLLFKASNE*
back to top

mRNA from alignment at H-elongata_contig63483:368..872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63483.13924.1 ID=mRNA_H-elongata_contig63483.13924.1|Name=mRNA_H-elongata_contig63483.13924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=505bp|location=Sequence derived from alignment at H-elongata_contig63483:368..872+ (Himanthalia elongata Himel1 dioecious)
AGTCTGCTAGACCCAGCGCACATTTGCATCTCGCACGATGCTACTTCTGG TGGAGGAACCAAGGACAACGCCGGCCCCATCGACTTTGATGTGCGTCGCC GAAGTGTGTTGCTAGACCCGGGAGGGAGTTCTCGAATTTATGCTGTATGC CTAGAGCATTTGGTGGTTTTGTGTGAAACATTCCGATGACGGTGTTATTC GCTTTAGCAGCAAAAATACGTGAGATAAAAGTGTGACATCCCCGTGACAG GTCGTACGAGAAGGACCCCACGCGCCAAGCCCGAAAGGCTTCGTTTCCCT GGTGACGATGAAATCCTTCGGTAGGGAGAGCACGTTAGGTAGGGATAGCA GGTCAACCGTGCGATACACGTTCGAGGCTCCGTGTATTCTCCGGCAACGT TCCGATGGCAAAAAAGAGGGAGAGTTTTCCTTTGGGGCCGCCCTACATTG CATCCCGCTTGGAAAGGGCCGATCGCGCCTACTTTTCAAGGCGAGTAACG AATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig63483:368..872+

>mRNA_H-elongata_contig63483.13924.1 ID=mRNA_H-elongata_contig63483.13924.1|Name=mRNA_H-elongata_contig63483.13924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig63483:368..872+ (Himanthalia elongata Himel1 dioecious)
AGTCTGCTAGACCCAGCGCACATTTGCATCTCGCACGATGCTACTTCTGG
TGGAGGAACCAAGGACAACGCCGGCCCCATCGACTTTGATAGTCTGCTAG
ACCCAGCGCACATTTGCATCTCGCACGATGCTACTTCTGGTGGAGGAACC
AAGGACAACGCCGGCCCCATCGACTTTGATGTCGTACGAGAAGGACCCCA
CGCGCCAAGCCCGAAAGGCTTCGTTTCCCTGGTGACGATGAAATCCTTCG
GTAGGGAGAGCACGTTAGGTAGGGATAGCAGGTCAACCGTGCGATACACG
TTCGAGGCTCCGTGTATTCTCCGGCAACGTTCCGATGGCAAAAAAGAGGG
AGAGTTTTCCTTTGGGGCCGCCCTACATTGCATCCCGCTTGGAAAGGGCC
GATCGCGCCTACTTTTCAAGGCGAGTAACGAATAAGTCGTACGAGAAGGA
CCCCACGCGCCAAGCCCGAAAGGCTTCGTTTCCCTGGTGACGATGAAATC
CTTCGGTAGGGAGAGCACGTTAGGTAGGGATAGCAGGTCAACCGTGCGAT
ACACGTTCGAGGCTCCGTGTATTCTCCGGCAACGTTCCGATGGCAAAAAA
GAGGGAGAGTTTTCCTTTGGGGCCGCCCTACATTGCATCCCGCTTGGAAA
GGGCCGATCGCGCCTACTTTTCAAGGCGAGTAACGAATAA
back to top