mRNA_H-elongata_contig63404.13917.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63404.13917.1
Unique NamemRNA_H-elongata_contig63404.13917.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63404.13917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63404contigH-elongata_contig63404:2061..2660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.575184-CDS-H-elongata_contig63404:2060..22771622931017.575184-CDS-H-elongata_contig63404:2060..2277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63404 2061..2277 +
1691679663.9288251-CDS-H-elongata_contig63404:2060..22771691679663.9288251-CDS-H-elongata_contig63404:2060..2277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63404 2061..2277 +
1622931017.5904112-CDS-H-elongata_contig63404:2559..26601622931017.5904112-CDS-H-elongata_contig63404:2559..2660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63404 2560..2660 +
1691679663.9394429-CDS-H-elongata_contig63404:2559..26601691679663.9394429-CDS-H-elongata_contig63404:2559..2660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63404 2560..2660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63404.13917.1prot_H-elongata_contig63404.13917.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63404 2061..2660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63404.13917.1

>prot_H-elongata_contig63404.13917.1 ID=prot_H-elongata_contig63404.13917.1|Name=mRNA_H-elongata_contig63404.13917.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
RTQSSSPRRTQRSSWGTPPAPPAFGSTSSGMKGASFGIEDIAGSGPPGSK
VGFTSDANGGNDWRGVGNSEAQGEDDWYGDDDVPRCEHGKRCVKLAARNG
DNAGRE
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mRNA from alignment at H-elongata_contig63404:2061..2660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63404.13917.1 ID=mRNA_H-elongata_contig63404.13917.1|Name=mRNA_H-elongata_contig63404.13917.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at H-elongata_contig63404:2061..2660+ (Himanthalia elongata Himel1 dioecious)
AGGACACAGTCGTCTTCGCCACGTCGAACACAGCGATCTTCGTGGGGAAC
TCCACCCGCTCCACCCGCGTTCGGCAGTACCTCGTCAGGCATGAAGGGGG
CGAGCTTTGGAATTGAGGACATCGCAGGTTCAGGTCCTCCTGGAAGCAAA
GTGGGGTTTACTAGCGACGCTAACGGCGGGAACGATTGGAGGGGTGTTGG
AAACAGTGAGGCACAAGGTCAGTTCGTATGGATGCCATGTGGGCATATTT
CGGGGTGGGTAGACTGCGGTTAATACTTTAGATGTCGTTGATCCTTGTTT
TTTTTTGTGTTAACAAGAAATCGACAGTTAATCAGAGTCGGGAAGACGAA
ATGACCACGCTTAGCCTCTCATTTTCCATGCGGTGCAGTGACGTAACGAG
GCAGGAGAAGATTGCCCAAACTCTTGCCGTATATCGCACCCGACTTGCTC
CGCTCTTCAAACGTTGCACGCCCGCGCCCGGTGCCATTTTACCCCCAAGG
TGAGGATGATTGGTATGGAGACGATGACGTTCCGCGGTGCGAGCACGGAA
AACGGTGCGTGAAGCTCGCCGCCCGCAATGGAGACAATGCAGGAAGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig63404:2061..2660+

>mRNA_H-elongata_contig63404.13917.1 ID=mRNA_H-elongata_contig63404.13917.1|Name=mRNA_H-elongata_contig63404.13917.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig63404:2061..2660+ (Himanthalia elongata Himel1 dioecious)
AGGACACAGTCGTCTTCGCCACGTCGAACACAGCGATCTTCGTGGGGAAC
TCCACCCGCTCCACCCGCGTTCGGCAGTACCTCGTCAGGCATGAAGGGGG
CGAGCTTTGGAATTGAGGACATCGCAGGTTCAGGTCCTCCTGGAAGCAAA
GTGGGGTTTACTAGCGACGCTAACGGCGGGAACGATTGGAGGGGTGTTGG
AAACAGTGAGGCACAAGAGGACACAGTCGTCTTCGCCACGTCGAACACAG
CGATCTTCGTGGGGAACTCCACCCGCTCCACCCGCGTTCGGCAGTACCTC
GTCAGGCATGAAGGGGGCGAGCTTTGGAATTGAGGACATCGCAGGTTCAG
GTCCTCCTGGAAGCAAAGTGGGGTTTACTAGCGACGCTAACGGCGGGAAC
GATTGGAGGGGTGTTGGAAACAGTGAGGCACAAGGTGAGGATGATTGGTA
TGGAGACGATGACGTTCCGCGGTGCGAGCACGGAAAACGGTGCGTGAAGC
TCGCCGCCCGCAATGGAGACAATGCAGGAAGGGAGGTGAGGATGATTGGT
ATGGAGACGATGACGTTCCGCGGTGCGAGCACGGAAAACGGTGCGTGAAG
CTCGCCGCCCGCAATGGAGACAATGCAGGAAGGGAG
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