mRNA_H-elongata_contig63334.13912.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63334.13912.1
Unique NamemRNA_H-elongata_contig63334.13912.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63334.13912.1 vs. uniprot
Match: A0A6H5KZJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZJ8_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 2.930e-47
Identity = 134/310 (43.23%), Postives = 172/310 (55.48%), Query Frame = 3 
Query:    3 VLNWSVLEPLYTSVEGITAFEPTAELVVPSTTNLVAA-----SEENTASYHYFLSEPSADVDSSSCPEPCTGEIITYYWSITGGHIYQLDVASSDAEPSACWLPVFDEVADGPPPGGVTS--WD--LECITTLLDRMEEEEIDEILKEASATSDRGSSDTNPAFIVAVVVGPVILVTCVGALVMLQCRRQKARKTKKMKATDEAWGEGLDGMGGQKKPRPPTGRFTLG-----PIAPSTAAIGDANGDSGIPAP--PTRGFSDVSMGS-ETHDGG-----GRPEGSATEALSEDEE---DVGDGDMVYPL 857
            VLNWS+L   Y ++ G+T+F PT    +PSTT LVAA     SEE T  +HYFL+EP+ D+D S+CPEPC+ +++TYYWS T G +YQLD+A   AEP  CWL +F  VADGPP  GV    W+  L C   LL  +E+          S  S  G++        A V+ P +LV+ V  L     R QK R  +K++ATDEAWGEGLDG G  K PRPPTG+F LG      +A S A    A G   + A   P R  +DVS+   E   GG     GR +      +  DEE   + G  DMVYP+
Sbjct:  282 VLNWSLLGADYLALAGVTSFTPTEASTLPSTTFLVAAREPVVSEELTPDFHYFLAEPAEDMDPSACPEPCSEQVVTYYWSSTAGTVYQLDMADVAAEPPPCWLDLFQAVADGPPAEGVDPAVWEATLTCTAGLLQAVED----------SMASGGGTAVAAGR---AAVLVPALLVSFV-LLAFGFFRHQKGRWLRKIRATDEAWGEGLDGNGKGKAPRPPTGKFKLGIDGGVAVAASRAPAAVAAGADRLKASHAPQRVLTDVSIDEGEAPTGGMAVTAGRKQQQVVGVVVVDEELGGNEGGEDMVYPM 577
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BLAST of mRNA_H-elongata_contig63334.13912.1 vs. uniprot
Match: D8LJR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR6_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.350e-41
Identity = 118/306 (38.56%), Postives = 154/306 (50.33%), Query Frame = 3 
Query:    3 VLNWSVLEPLYTSVEGITAFEPTAELVVPSTTNLVAA-----SEENTASYHYFLSEPSADVDSSSCPEPCTGEIITYYWSITGGHIYQLDVASSDAEPSACWLPVFDEVADGPPPGGVTSWDLECITTLLDRMEEEEIDEILKEASATSDRGSSDTNPAFIVAVVVGPVILVTCVGALVMLQCRRQKARKTKKMKATDEAWGEGLDGMGGQKKPRPPTGRFTLG-----PIAPSTAAIGDANGDSGIPAP--PTRGFSDVSMGSETHDGGG------RPEGSATEALSEDEE---DVGDGDMVYPL 857
            VLNWS+L   Y +++G+++F PT    +PSTT L AA     SEE T  +HYFL+EP+ D+D S+CPEPC+ +++TYYWS T G +YQLD+A   AEP  CWL +F  VADGPP  GV                    D  + EA+                         VTC   L+       K R  +K++ TDEAWGE LDG G  K PRPPTG+F LG      +A S A    A G   + A   P R F+DVS+       GG      R +      ++ DEE   + G  DMVYP+
Sbjct:  291 VLNWSLLGADYLALDGVSSFTPTEASTLPSTTFLAAAREPDVSEELTPDFHYFLAEPAEDMDPSACPEPCSEQVVTYYWSSTAGTVYQLDMADVSAEPPPCWLGLFQAVADGPPAEGV--------------------DPAVWEAT-------------------------VTCTAGLLQAVEESMKGRWLRKIRTTDEAWGEELDGNGKGKAPRPPTGKFKLGIDGGVAVAASRAPSAVAAGADRLKASHAPQRVFTDVSIDEGEAPAGGMAATTERKQQRVVGMVTVDEELGGNEGGEDMVYPM 551
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63334.13912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZJ8_9PHAE2.930e-4743.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJR6_ECTSI1.350e-4138.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63334contigH-elongata_contig63334:340..2730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003000.1
Exons2
Model size2103
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63334.13912.1prot_H-elongata_contig63334.13912.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63334 1011..1493 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.1238782-UTR-H-elongata_contig63334:339..4921622931017.1238782-UTR-H-elongata_contig63334:339..492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63334 340..492 +
1691679663.6803627-UTR-H-elongata_contig63334:339..4921691679663.6803627-UTR-H-elongata_contig63334:339..492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63334 340..492 +
1622931017.1397562-UTR-H-elongata_contig63334:780..10101622931017.1397562-UTR-H-elongata_contig63334:780..1010Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63334 781..1010 +
1691679663.6951773-UTR-H-elongata_contig63334:780..10101691679663.6951773-UTR-H-elongata_contig63334:780..1010Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63334 781..1010 +
1622931017.19254-UTR-H-elongata_contig63334:1493..27301622931017.19254-UTR-H-elongata_contig63334:1493..2730Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63334 1494..2730 +
1691679663.7173417-UTR-H-elongata_contig63334:1493..27301691679663.7173417-UTR-H-elongata_contig63334:1493..2730Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63334 1494..2730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.17084-CDS-H-elongata_contig63334:1010..14931622931017.17084-CDS-H-elongata_contig63334:1010..1493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63334 1011..1493 +
1691679663.7083142-CDS-H-elongata_contig63334:1010..14931691679663.7083142-CDS-H-elongata_contig63334:1010..1493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63334 1011..1493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63334.13912.1

>prot_H-elongata_contig63334.13912.1 ID=prot_H-elongata_contig63334.13912.1|Name=mRNA_H-elongata_contig63334.13912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
MEEEEIDEILKEASATSDRGSSDTNPAFIVAVVVGPVILVTCVGALVMLQ
CRRQKARKTKKMKATDEAWGEGLDGMGGQKKPRPPTGRFTLGPIAPSTAA
IGDANGDSGIPAPPTRGFSDVSMGSETHDGGGRPEGSATEALSEDEEDVG
DGDMVYPLDV*
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mRNA from alignment at H-elongata_contig63334:340..2730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63334.13912.1 ID=mRNA_H-elongata_contig63334.13912.1|Name=mRNA_H-elongata_contig63334.13912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2391bp|location=Sequence derived from alignment at H-elongata_contig63334:340..2730+ (Himanthalia elongata Himel1 dioecious)
AGGTGTTGAACTGGAGCGTACTGGAGCCCCTGTACACGAGCGTGGAAGGC
ATCACCGCTTTCGAACCTACGGCCGAGCTAGTCGTGCCCTCGACGACGAA
TCTGGTGGCTGCGAGCGAAGAAAACACCGCGAGTTATCACTACTTTCTGT
CAGGTGGGATTGGATGTGGGACTAGGGGAGTGGGAAGCTTTATGAACACT
GGGAGATCTCACGGCTATTGCCAACACTAGGTTTGCGGTATGAAAGGGTT
AAGGGTGCGCATTTACCTTTAGCCCCGTGTACCACATCTATGGAGACGCC
AGAGGTTTACATCGCTTTTTAAGCTAGAAAATTTATTTGTAGCCGTTATC
GTCTTTCGGCGGCCATCCCCGGTTTCATAACGCCTCTTCTTTTCCCGGTC
TGACTCGTCATTCCTCTCTCCTCAATCGTGCGCAAAATTAGAACCGTCGG
CCGACGTTGACTCCTCTTCCTGCCCGGAACCCTGCACCGGCGAGATCATC
ACGTACTACTGGTCGATCACTGGGGGTCATATCTATCAGCTGGACGTAGC
TTCGAGCGACGCCGAGCCTAGCGCGTGCTGGCTCCCGGTTTTTGACGAGG
TAGCTGACGGTCCCCCGCCTGGAGGGGTCACGTCCTGGGACCTGGAGTGC
ATCACCACTTTGCTGGATCGGATGGAAGAAGAAGAGATAGATGAAATCTT
GAAGGAGGCATCCGCGACCTCCGACCGAGGATCCTCGGACACCAACCCCG
CTTTCATCGTTGCCGTGGTCGTGGGACCCGTGATCCTGGTGACGTGCGTA
GGGGCATTGGTGATGCTACAATGCCGCCGGCAGAAGGCCCGCAAGACGAA
GAAGATGAAGGCCACGGACGAGGCCTGGGGGGAAGGGCTTGACGGAATGG
GGGGGCAAAAGAAGCCCAGGCCCCCCACGGGGCGGTTTACGCTCGGTCCG
ATTGCTCCGTCGACGGCGGCCATTGGGGACGCCAACGGCGATTCGGGAAT
CCCCGCGCCCCCCACGCGCGGGTTTAGTGACGTCAGCATGGGGTCTGAGA
CTCACGACGGAGGCGGACGGCCCGAAGGCAGTGCCACGGAGGCGTTGTCG
GAAGATGAAGAGGATGTGGGTGATGGCGACATGGTGTACCCACTGGACGT
TTGAACAGGGTTTTTGTTGTTGTCTTCAGACGCTCATGGATTTTCGTTTC
ATCGATCTGCTGCCGCATTGTCCCCGATAGAAGTTTCCCCAACACGGTGC
CAGTGCTCTGAGTTCCCTGAGTTGTGCGTGCGGCTCTTTTTGTGTATATT
TTGGAGGGTAGTCCTGTCGTTCGGGAAAGGACTCAAATGCTCAAAACTTG
TAGAAAACCATTATTTTTTTTATGCCATGCGATGATTTTGATCTGTGTTC
GCGGCTTGTCAAAAGAAATCGCTTATTAGCTCGAGCCTTCTCAGGACCCG
CTGAAGTTTTCGTGTGCAAGGGTGGCTGGCTGTACCACACACGGGGTGGA
TGGTGGGCGATGAGAGCATCGCGGCATTTATTCCGGTCTTGAGGATTCAT
ACCCGTTCGTGCCTAAAGCCGAGGTTCTGACGACAGCGACTAGTGGCTGA
ACGTTGACGGGAAGGGTTTACGTCAACTATCCGTGCAGTTTCTAAAGTAT
TACGTATGGCTTGTGGTGTTATGTTACGTCTCCCGCTTCCACCGAAAAAG
TAGTGACCATGTTGCCCCACCTCCACTGTTGCATTATTCGCCCATGAAGC
TAGCCTTTCGTTCGCTTCCCTTCCATTCACCAACACCGGAATAGGGCAGG
ATAATAAGGAAGGCCAAAGAAGCTTTGTGTAGCTCTAGAGAATGAAAAGG
ACAAATACTACAACGGGGTGGGCAATCGTTCTTTTTTCTTACGGTGTTGT
AGTGGAGAAGAGGGGGTCCCAACAGCGGCGCCCGAATGGCCAATGATAAA
AAGGAAAACAGCGCACCAGAGATTTATCTGTATATCCCAGTTTATCAAAC
TTTTTGCCTTGGAAGTTTCCCTGCATGATTGCCCGCTCTACCGAGTACAT
TGTGGCAAAAGCTAGCGTACCCCCCCTTCTCTGTAGATCGTTGACACAGC
CGCGTTGATCTTGTGGAGCTGCTCCTTGCCCTTCTCTCTAGATTTTTCGT
GTCAGCTTGTCTCGCCCGCTGGTGATCTTCGATTGAGCTCTTTGTCATGA
CTTTCCTTGGCGGGTAGGTGTCACGAAAGGAGATGGACTGTGCTGGTATG
TAGTACCGTAAATTTAATTTGGATTAGCAGCGCCGGTGTGTCCCATCGCC
CCCCCCCCCTCCCCCCGTTATGGGGGGTTTGCCTTCGGTGGGATCCCGGC
GTTAAGTCTTTTTTGTCACGAGAGTCTGATTGTGATTATCT
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Coding sequence (CDS) from alignment at H-elongata_contig63334:340..2730+

>mRNA_H-elongata_contig63334.13912.1 ID=mRNA_H-elongata_contig63334.13912.1|Name=mRNA_H-elongata_contig63334.13912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig63334:340..2730+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAAGAAGAGATAGATGAAATCTTGAAGGAGGCATCCGCGACCTC
CGACCGAGGATCCTCGGACACCAACCCCGCTTTCATCGTTGCCGTGGTCG
TGGGACCCGTGATCCTGGTGACGTGCGTAGGGGCATTGGTGATGCTACAA
TGCCGCCGGCAGAAGGCCCGCAAGACGAAGAAGATGAAGGCCACGGACGA
GGCCTGGGGGGAAGGGCTTGACGGAATGGGGGGGCAAAAGAAGCCCAGGC
CCCCCACGGGGCGGTTTACGCTCGGTCCGATTGCTCCGTCGACGGCGGCC
ATTGGGGACGCCAACGGCGATTCGGGAATCCCCGCGCCCCCCACGCGCGG
GTTTAGTGACGTCAGCATGGGGTCTGAGACTCACGACGGAGGCGGACGGC
CCGAAGGCAGTGCCACGGAGGCGTTGTCGGAAGATGAAGAGGATGTGGGT
GATGGCGACATGGTGTACCCACTGGACGTTTGAATGGAAGAAGAAGAGAT
AGATGAAATCTTGAAGGAGGCATCCGCGACCTCCGACCGAGGATCCTCGG
ACACCAACCCCGCTTTCATCGTTGCCGTGGTCGTGGGACCCGTGATCCTG
GTGACGTGCGTAGGGGCATTGGTGATGCTACAATGCCGCCGGCAGAAGGC
CCGCAAGACGAAGAAGATGAAGGCCACGGACGAGGCCTGGGGGGAAGGGC
TTGACGGAATGGGGGGGCAAAAGAAGCCCAGGCCCCCCACGGGGCGGTTT
ACGCTCGGTCCGATTGCTCCGTCGACGGCGGCCATTGGGGACGCCAACGG
CGATTCGGGAATCCCCGCGCCCCCCACGCGCGGGTTTAGTGACGTCAGCA
TGGGGTCTGAGACTCACGACGGAGGCGGACGGCCCGAAGGCAGTGCCACG
GAGGCGTTGTCGGAAGATGAAGAGGATGTGGGTGATGGCGACATGGTGTA
CCCACTGGACGTTTGA
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