prot_H-elongata_contig63334.13912.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63334.13912.1
Unique Nameprot_H-elongata_contig63334.13912.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length161
Homology
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BLAST of mRNA_H-elongata_contig63334.13912.1 vs. uniprot
Match: A0A6H5KZJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZJ8_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.450e-9
Identity = 60/144 (41.67%), Postives = 75/144 (52.08%), Query Frame = 0 
Query:   31 AVVVGPVILVTCVGALVMLQCRRQKARKTKKMKATDEAWGEGLDGMGGQKKPRPPTGRFTLG-----PIAPSTAAIGDANGDSGIPAP--PTRGFSDVSMGS-ETHDGG-----GRPEGSATEALSEDEE---DVGDGDMVYPL 158
            A V+ P +LV+ V  L     R QK R  +K++ATDEAWGEGLDG G  K PRPPTG+F LG      +A S A    A G   + A   P R  +DVS+   E   GG     GR +      +  DEE   + G  DMVYP+
Sbjct:  435 AAVLVPALLVSFV-LLAFGFFRHQKGRWLRKIRATDEAWGEGLDGNGKGKAPRPPTGKFKLGIDGGVAVAASRAPAAVAAGADRLKASHAPQRVLTDVSIDEGEAPTGGMAVTAGRKQQQVVGVVVVDEELGGNEGGEDMVYPM 577
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BLAST of mRNA_H-elongata_contig63334.13912.1 vs. uniprot
Match: D8LJR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR6_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.240e-8
Identity = 52/135 (38.52%), Postives = 66/135 (48.89%), Query Frame = 0 
Query:   40 VTCVGALVMLQCRRQKARKTKKMKATDEAWGEGLDGMGGQKKPRPPTGRFTLG-----PIAPSTAAIGDANGDSGIPAP--PTRGFSDVSMGSETHDGGG------RPEGSATEALSEDEE---DVGDGDMVYPL 158
            VTC   L+       K R  +K++ TDEAWGE LDG G  K PRPPTG+F LG      +A S A    A G   + A   P R F+DVS+       GG      R +      ++ DEE   + G  DMVYP+
Sbjct:  417 VTCTAGLLQAVEESMKGRWLRKIRTTDEAWGEELDGNGKGKAPRPPTGKFKLGIDGGVAVAASRAPSAVAAGADRLKASHAPQRVFTDVSIDEGEAPAGGMAATTERKQQRVVGMVTVDEELGGNEGGEDMVYPM 551
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63334.13912.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZJ8_9PHAE1.450e-941.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJR6_ECTSI1.240e-838.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..160
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..49
NoneNo IPR availableTMHMMTMhelixcoord: 27..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63334contigH-elongata_contig63334:1011..1493 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63334.13912.1mRNA_H-elongata_contig63334.13912.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63334 340..2730 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63334.13912.1 ID=prot_H-elongata_contig63334.13912.1|Name=mRNA_H-elongata_contig63334.13912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
MEEEEIDEILKEASATSDRGSSDTNPAFIVAVVVGPVILVTCVGALVMLQ
CRRQKARKTKKMKATDEAWGEGLDGMGGQKKPRPPTGRFTLGPIAPSTAA
IGDANGDSGIPAPPTRGFSDVSMGSETHDGGGRPEGSATEALSEDEEDVG
DGDMVYPLDV*
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