mRNA_H-elongata_contig63320.13908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63320.13908.1
Unique NamemRNA_H-elongata_contig63320.13908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Match: D8LH11_ECTSI (Zn-dependent peptidase, Cym1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH11_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 4.230e-35
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    4 KHMVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTFSIGLK 213
            KHMVSVNWLLNDEPLSVKDALA+ELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNT+SIGLK
Sbjct:  245 KHMVSVNWLLNDEPLSVKDALALELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTYSIGLK 314
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BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Match: A0A6H5LB25_9PHAE (M16C_associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB25_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.720e-34
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    4 KHMVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTFSIGLK 213
            KHMVSVNWLLNDEPLSVKDALA+ELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNT+SIGLK
Sbjct:  367 KHMVSVNWLLNDEPLSVKDALALELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTYSIGLK 436
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BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Match: A0A835YY54_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY54_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.230e-25
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    4 KHMVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTFSIGLK 213
            +HM+SVNWLLND P+S K+ LA+ + DDLLVG SAATL+KALTDSGLG SVIGGGLS ELLQ TFSIGLK
Sbjct:  307 QHMLSVNWLLNDTPMSPKEKLALNILDDLLVGNSAATLQKALTDSGLGSSVIGGGLSDELLQATFSIGLK 376
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BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Match: A0A7S2B676_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B676_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.880e-24
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 DKHMVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTFSIGLK 213
            +KHM+ +NWLLN+ P+S KD LA+ + D LL+GTSAATL+KALTDS LG +VIGGGLS EL Q TFS+GLK
Sbjct:   71 NKHMIQMNWLLNEAPMSSKDKLALAVVDHLLLGTSAATLQKALTDSSLGSAVIGGGLSDELKQATFSVGLK 141
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BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Match: A0A835ZGW9_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.280e-22
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    7 HMVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTFSIGLK 213
            HMVSVNWLLND PL+ +D L + + ++LLVG SAA +RKALTDSGLG SVIGGGLS ELLQ T+ IGLK
Sbjct:  308 HMVSVNWLLNDAPLTPRDKLTLSILNNLLVGNSAAVVRKALTDSGLGASVIGGGLSDELLQATWGIGLK 376
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BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Match: F0YC48_AURAN (M16C_associated domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC48_AURAN)

HSP 1 Score: 96.3 bits (238), Expect = 1.360e-21
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    7 HMVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTFSIGLK 213
            HMVSVNWLL  EP+S KD L + + D LL+GTS + LRKALTDSGLGESVIGGGLS EL Q TF++GLK
Sbjct:  315 HMVSVNWLLASEPMSPKDELGLGVLDHLLLGTSTSRLRKALTDSGLGESVIGGGLSDELKQPTFAVGLK 383
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BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Match: A0A7S4A530_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A530_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.460e-21
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    4 KHMVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTFSIGLK 213
            +HMVSVNWLL + P S KD L + + D LL+GTS + LRKALTDSGLGESV+GGGLS EL+Q T+S+GLK
Sbjct:  404 QHMVSVNWLLTETPPSPKDELGLAVLDHLLLGTSTSRLRKALTDSGLGESVVGGGLSDELVQPTYSVGLK 473
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BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Match: A0A7S2FA16_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FA16_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.460e-21
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    4 KHMVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTFSIGLK 213
            +HMV +NWLLNDEP + K+ L + + + LL+GTSAA L+KALTDSGLG +VIGGGLS EL Q TFSIGLK
Sbjct:  329 EHMVQINWLLNDEPFTSKEGLTLAVLNHLLLGTSAACLQKALTDSGLGSAVIGGGLSDELSQATFSIGLK 398
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BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Match: A0A7S1VIL2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIL2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.450e-21
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 DKHMVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTFSIGLK 213
            +KHMV+VNWLLND+PL   + LAI + D LL GT ++TLRKAL +SGLGE+  GGGLS ELLQ TFS+GLK
Sbjct:  384 EKHMVNVNWLLNDKPLGSTEELAIGILDHLLTGTPSSTLRKALMESGLGEATTGGGLSDELLQATFSMGLK 454
[Close]
BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Match: A0A8J5XH82_DIALT (M16C_associated domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XH82_DIALT)

HSP 1 Score: 93.2 bits (230), Expect = 1.650e-20
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    4 KHMVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVIGGGLSSELLQNTFSIGLK 213
            KHMV+VNWL+NDEP++++D+LA  + D LL+GTSA+ L KALTDS LG+ + GGGLS ELLQ T+ IGLK
Sbjct:  340 KHMVTVNWLVNDEPMTLRDSLAWGILDHLLLGTSASKLAKALTDSNLGDDLAGGGLSDELLQATYGIGLK 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63320.13908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH11_ECTSI4.230e-3597.14Zn-dependent peptidase, Cym1 homolog n=1 Tax=Ectoc... [more]
A0A6H5LB25_9PHAE2.720e-3497.14M16C_associated domain-containing protein n=1 Tax=... [more]
A0A835YY54_9STRA2.230e-2577.14Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
A0A7S2B676_9STRA4.880e-2467.61Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835ZGW9_9STRA7.280e-2271.01Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
F0YC48_AURAN1.360e-2171.01M16C_associated domain-containing protein n=1 Tax=... [more]
A0A7S4A530_9STRA3.460e-2167.14Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S2FA16_9STRA3.460e-2167.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1VIL2_9STRA6.450e-2166.20Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A8J5XH82_DIALT1.650e-2064.29M16C_associated domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63320contigH-elongata_contig63320:592..804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue1.8e-27
Seed eggNOG ortholog2880.D8LH11
KEGG koko:K06972
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010035,GO:0010038,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031974,GO:0031975,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0051604,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG1026@1,KOG2019@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size204
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.625936-UTR-H-elongata_contig63320:591..6001622931016.625936-UTR-H-elongata_contig63320:591..600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63320 592..600 +
1691679663.4661996-UTR-H-elongata_contig63320:591..6001691679663.4661996-UTR-H-elongata_contig63320:591..600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63320 592..600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.638151-CDS-H-elongata_contig63320:600..8041622931016.638151-CDS-H-elongata_contig63320:600..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63320 601..804 +
1691679663.4876897-CDS-H-elongata_contig63320:600..8041691679663.4876897-CDS-H-elongata_contig63320:600..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63320 601..804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63320.13908.1prot_H-elongata_contig63320.13908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63320 601..804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63320.13908.1

>prot_H-elongata_contig63320.13908.1 ID=prot_H-elongata_contig63320.13908.1|Name=mRNA_H-elongata_contig63320.13908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MVSVNWLLNDEPLSVKDALAIELTDDLLVGTSAATLRKALTDSGLGESVI
GGGLSSELLQNTFSIGLK
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mRNA from alignment at H-elongata_contig63320:592..804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63320.13908.1 ID=mRNA_H-elongata_contig63320.13908.1|Name=mRNA_H-elongata_contig63320.13908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig63320:592..804+ (Himanthalia elongata Himel1 dioecious)
GACAAGCACATGGTGTCTGTCAACTGGCTCCTAAACGACGAGCCCCTCTC
CGTCAAGGACGCTCTGGCCATTGAGCTCACGGACGACCTCCTGGTGGGAA
CCTCGGCCGCTACGCTCCGCAAGGCCCTCACCGACAGTGGCCTCGGGGAG
AGCGTCATCGGAGGAGGGCTGAGCTCGGAGCTCTTGCAGAACACGTTCAG
CATCGGCCTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig63320:592..804+

>mRNA_H-elongata_contig63320.13908.1 ID=mRNA_H-elongata_contig63320.13908.1|Name=mRNA_H-elongata_contig63320.13908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig63320:592..804+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTCTGTCAACTGGCTCCTAAACGACGAGCCCCTCTCCGTCAAGGA
CGCTCTGGCCATTGAGCTCACGGACGACCTCCTGGTGGGAACCTCGGCCG
CTACGCTCCGCAAGGCCCTCACCGACAGTGGCCTCGGGGAGAGCGTCATC
GGAGGAGGGCTGAGCTCGGAGCTCTTGCAGAACACGTTCAGCATCGGCCT
CAAGATGGTGTCTGTCAACTGGCTCCTAAACGACGAGCCCCTCTCCGTCA
AGGACGCTCTGGCCATTGAGCTCACGGACGACCTCCTGGTGGGAACCTCG
GCCGCTACGCTCCGCAAGGCCCTCACCGACAGTGGCCTCGGGGAGAGCGT
CATCGGAGGAGGGCTGAGCTCGGAGCTCTTGCAGAACACGTTCAGCATCG
GCCTCAAG
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