mRNA_H-elongata_contig63294.13905.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63294.13905.1
Unique NamemRNA_H-elongata_contig63294.13905.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63294.13905.1 vs. uniprot
Match: D8LSH4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH4_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.720e-13
Identity = 80/113 (70.80%), Postives = 89/113 (78.76%), Query Frame = 1 
Query:    7 PSIMINLRNHFSATPLHRAAAKGHAEVVSMLLDNGADVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTPKAQGGVTPLVLAARKDE------RRGSIARGRPVSRLPRE 327
            PS ++++RNHF ATPLHRAAAKGHAEVV+ML+ NGA VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  P  KAQ GVTPL+ AARK E            RGR +SRLPR+
Sbjct:  354 PSEVVDIRNHFHATPLHRAAAKGHAEVVTMLVQNGASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPAIKAQQGVTPLI-AARKPEGGXXXXXXXXXXRGRAMSRLPRD 465
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BLAST of mRNA_H-elongata_contig63294.13905.1 vs. uniprot
Match: A0A6H5KW23_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW23_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.550e-11
Identity = 72/90 (80.00%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    7 PSIMINLRNHFSATPLHRAAAKGHAEVVSMLLDNGADVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTPKAQGGVTPLVLAARKDE 276
            PS ++++RNHF ATPLHRAAAKGHAEVV+ML+ NGA VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  P  KAQ GVTPL+ AARK E
Sbjct:  337 PSEVVDIRNHFHATPLHRAAAKGHAEVVTMLVQNGASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPAIKAQQGVTPLI-AARKPE 425
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63294.13905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSH4_ECTSI2.720e-1370.80Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KW23_9PHAE2.550e-1180.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63294contigH-elongata_contig63294:1456..2876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D8LSH4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size423
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63294.13905.1prot_H-elongata_contig63294.13905.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63294 1456..2876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.349801-CDS-H-elongata_contig63294:1455..16021622931016.349801-CDS-H-elongata_contig63294:1455..1602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63294 1456..1602 -
1691679663.3560257-CDS-H-elongata_contig63294:1455..16021691679663.3560257-CDS-H-elongata_contig63294:1455..1602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63294 1456..1602 -
1622931016.36545-CDS-H-elongata_contig63294:2169..23611622931016.36545-CDS-H-elongata_contig63294:2169..2361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63294 2170..2361 -
1691679663.3665016-CDS-H-elongata_contig63294:2169..23611691679663.3665016-CDS-H-elongata_contig63294:2169..2361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63294 2170..2361 -
1622931016.3786156-CDS-H-elongata_contig63294:2792..28761622931016.3786156-CDS-H-elongata_contig63294:2792..2876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63294 2793..2876 -
1691679663.374667-CDS-H-elongata_contig63294:2792..28761691679663.374667-CDS-H-elongata_contig63294:2792..2876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63294 2793..2876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63294.13905.1

>prot_H-elongata_contig63294.13905.1 ID=prot_H-elongata_contig63294.13905.1|Name=mRNA_H-elongata_contig63294.13905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MSPSIMINLRNHFSATPLHRAAAKGHAEVVSMLLDNGADVNARDGFFYTP
LHQACVNGAAACVKVLLKAGADPTPKAQGGVTPLVLAARKDERRGSIARG
RPVSRLPREDWKEQESERERAIERTLSRRTSTGNMLKKVFN
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mRNA from alignment at H-elongata_contig63294:1456..2876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63294.13905.1 ID=mRNA_H-elongata_contig63294.13905.1|Name=mRNA_H-elongata_contig63294.13905.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1421bp|location=Sequence derived from alignment at H-elongata_contig63294:1456..2876- (Himanthalia elongata Himel1 dioecious)
ATGTCCCCCTCCATCATGATCAACCTGAGAAATCACTTCAGCGCGACCCC
GCTCCATCGAGCGGCTGCCAAGGGTCACGCTGAGGTGGGGATGCGATACA
AGATCTACATACAACAATATAATTATTTATTTATTTATATATATAAATCG
GTGGAAGGAGGGGCTTTCTGTGCGCGCACGCACTCGTTTGCGCTATTGCT
TCCTACTGTCAATGTTGATCGATTCCAGAGGGGTTTGTTTATGATATGGC
AGGCGATGATTGATTGTTCCTTCGGGGGTAGATATAGGTAGGGCTACCGA
GGAAAAATGACTGAGCGCAATCGCATGAGATGTCCTCCTTCCCCTCCCCC
TCGATTGCTCGTCGGAAACGTCGCATGTCGTGCAGGCATCGTGTTCGCTA
TTGCCGACGCGCATTCCATGTATGTATAACGTAAAACGAAAGGGTCACGC
GCGCACACACAAACCATGCCCACCTTCGGATGCCTCCGGTTCCCCCACTA
TCTATTGGTTCACAGGTGGTGTCGATGCTGCTCGATAACGGCGCTGATGT
GAACGCCCGCGATGGATTTTTCTACACGCCCCTCCACCAGGCCTGCGTCA
ACGGCGCCGCGGCGTGTGTTAAAGTCCTGCTCAAGGCCGGCGCAGATCCC
ACCCCGAAGGCACAGGGGGGCGTGACGCCTCTTGTTCTAGCCGCGAGGAA
GGACGAGGTACGGGAGCTCATCGAGGCTTCCCTGCCGGGGTGGAGTGCCA
TGGACATGTGCATATCCAGCGAGAGCGAGAGCGACCGAGACGGCGACGGC
GACGGTGCGGGCTTCGGCGGCAGCCTAGGCAGGTGGAGCAGGAGCAGAAA
GTGGAACATCACCGGCGGCGGTAGCGGTGGCAGTGGCTGTTGCCGCCGAG
ATGAGCGGGAACGTGGAACGGAAGCGGGAATCGAAGTCGATGAGAGAGAC
AAAGCATGGGACTTTGGAGACGGCGGCAGGGGTGGTATTTCTATCGCTGA
ACGGCGGGCGAAGACGACGGTTCTCAAGGGAGCCGTGGACGTGCGGACTC
TTCCAGTCGACGGTGCGACCGCGCCCGCACCCGAGCTGCAGGCACGACCG
GCTGTGGAGACTTCGACGACGAAGGCAGCGGCAAACGCCATGGATGTCGA
TGAAGACGACGACGATGTTACTTCGAAGCAGCTGCGTCGCTGTCGAGCAG
CGTCTCTTTCCGACGTTCTAGTAGCAGCAAAAGCAAGCACGGCTACCGTG
ATGGGGGGAGCCGAAGACCGCGAGCGGCGTGGTTCGATCGCGAGAGGTCG
ACCGGTCAGCAGACTTCCACGAGAAGACTGGAAGGAGCAAGAGAGCGAGC
GGGAACGGGCGATTGAACGCACGCTGTCTCGACGTACCAGCACTGGCAAC
ATGCTCAAGAAGGTCTTTAAC
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Coding sequence (CDS) from alignment at H-elongata_contig63294:1456..2876-

>mRNA_H-elongata_contig63294.13905.1 ID=mRNA_H-elongata_contig63294.13905.1|Name=mRNA_H-elongata_contig63294.13905.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig63294:1456..2876- (Himanthalia elongata Himel1 dioecious)
ATGTCCCCCTCCATCATGATCAACCTGAGAAATCACTTCAGCGCGACCCC
GCTCCATCGAGCGGCTGCCAAGGGTCACGCTGAGATGTCCCCCTCCATCA
TGATCAACCTGAGAAATCACTTCAGCGCGACCCCGCTCCATCGAGCGGCT
GCCAAGGGTCACGCTGAGGTGGTGTCGATGCTGCTCGATAACGGCGCTGA
TGTGAACGCCCGCGATGGATTTTTCTACACGCCCCTCCACCAGGCCTGCG
TCAACGGCGCCGCGGCGTGTGTTAAAGTCCTGCTCAAGGCCGGCGCAGAT
CCCACCCCGAAGGCACAGGGGGGCGTGACGCCTCTTGTTCTAGCCGCGAG
GAAGGACGAGGTGGTGTCGATGCTGCTCGATAACGGCGCTGATGTGAACG
CCCGCGATGGATTTTTCTACACGCCCCTCCACCAGGCCTGCGTCAACGGC
GCCGCGGCGTGTGTTAAAGTCCTGCTCAAGGCCGGCGCAGATCCCACCCC
GAAGGCACAGGGGGGCGTGACGCCTCTTGTTCTAGCCGCGAGGAAGGACG
AGCGGCGTGGTTCGATCGCGAGAGGTCGACCGGTCAGCAGACTTCCACGA
GAAGACTGGAAGGAGCAAGAGAGCGAGCGGGAACGGGCGATTGAACGCAC
GCTGTCTCGACGTACCAGCACTGGCAACATGCTCAAGAAGGTCTTTAACC
GGCGTGGTTCGATCGCGAGAGGTCGACCGGTCAGCAGACTTCCACGAGAA
GACTGGAAGGAGCAAGAGAGCGAGCGGGAACGGGCGATTGAACGCACGCT
GTCTCGACGTACCAGCACTGGCAACATGCTCAAGAAGGTCTTTAAC
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