mRNA_H-elongata_contig63270.13903.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63270.13903.1
Unique NamemRNA_H-elongata_contig63270.13903.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63270.13903.1 vs. uniprot
Match: D8LJI6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.870e-12
Identity = 61/68 (89.71%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:  103 DGLRPXXXXXXXXXXXXXXXXXXXXXXXXFCHPSFGYPSDKKARRCARHRLENMEGVKGHRHKRRKEA 306
            DGLRP  XXXXXXXXXXXXXXXXXXXXXX  HPSFGY SDKKARRCARHRLENMEGVKGHR KRR+EA
Sbjct:  594 DGLRPVCXXXXXXXXXXXXXXXXXXXXXXXXHPSFGYASDKKARRCARHRLENMEGVKGHRQKRRREA 661
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63270.13903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJI6_ECTSI2.870e-1289.71EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63270contigH-elongata_contig63270:2646..3357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D8LJI6
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.1937144-CDS-H-elongata_contig63270:2645..27681622931016.1937144-CDS-H-elongata_contig63270:2645..2768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63270 2646..2768 -
1691679663.310519-CDS-H-elongata_contig63270:2645..27681691679663.310519-CDS-H-elongata_contig63270:2645..2768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63270 2646..2768 -
1622931016.207403-CDS-H-elongata_contig63270:3174..33571622931016.207403-CDS-H-elongata_contig63270:3174..3357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63270 3175..3357 -
1691679663.3204062-CDS-H-elongata_contig63270:3174..33571691679663.3204062-CDS-H-elongata_contig63270:3174..3357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63270 3175..3357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63270.13903.1prot_H-elongata_contig63270.13903.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63270 2646..3357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63270.13903.1

>prot_H-elongata_contig63270.13903.1 ID=prot_H-elongata_contig63270.13903.1|Name=mRNA_H-elongata_contig63270.13903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
RPSVCSGHRETGMVDIVSRRCREPECGRRPLYNLDGLRPVCCSQHKEPGM
IDVVSTRCQEPGCFCHPSFGYPSDKKARRCARHRLENMEGVKGHRHKRRK
EA
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mRNA from alignment at H-elongata_contig63270:2646..3357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63270.13903.1 ID=mRNA_H-elongata_contig63270.13903.1|Name=mRNA_H-elongata_contig63270.13903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=712bp|location=Sequence derived from alignment at H-elongata_contig63270:2646..3357- (Himanthalia elongata Himel1 dioecious)
CGTCCGTCCGTCTGCAGCGGGCACCGAGAGACCGGCATGGTGGACATCGT
GTCCCGACGCTGCAGGGAACCAGAGTGCGGGAGACGGCCCCTGTACAATC
TCGACGGTCTGCGGCCGGTCTGCTGCAGCCAGCACAAGGAGCCCGGTATG
ATCGACGTCGTCAGCACGCGTTGCCAAGAACCGGTGAGAAACTGCATTAA
AGAACGTTTAGAGAGAAAAATATTTGTGCCGCTACGCCGACAGTGTTGCG
ATTGTTGGGACAGTGCTAGTGGCAGCGAGATCCCGTGGTGGTCCTTGGCT
CGTGAGAGTCTGTCTGAAGAACGAGCAATCGCGCTTCTGAGGCTTCGATG
CTTGGGTGGCGATGGATTCGATGCGCGATTCTAGACGATCCTTAGAGCAC
ACACAGAGCAGAGGTTACCTGTCAGATTCATATATCGGTTGCTTGTTGCC
GTCTCTCCGCCAGGGGCTTAGACGTTACCCGTTTCGCTTACCCGTTTCAA
TTCGTTTCGTTCCCTCCCCCTCCCCATCATAGCGTCGTCGCCGCCCCACA
CGCCATTCTTTTTTTTTCATTGTTTTTTTTACTGTACAGGGGTGCTTTTG
CCACCCGTCCTTCGGCTACCCCTCGGATAAGAAAGCTCGCCGTTGCGCTA
GGCACCGCTTGGAGAACATGGAGGGTGTCAAGGGGCATCGACACAAACGT
CGGAAGGAGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig63270:2646..3357-

>mRNA_H-elongata_contig63270.13903.1 ID=mRNA_H-elongata_contig63270.13903.1|Name=mRNA_H-elongata_contig63270.13903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig63270:2646..3357- (Himanthalia elongata Himel1 dioecious)
CGTCCGTCCGTCTGCAGCGGGCACCGAGAGACCGGCATGGTGGACATCGT
GTCCCGACGCTGCAGGGAACCAGAGTGCGGGAGACGGCCCCTGTACAATC
TCGACGGTCTGCGGCCGGTCTGCTGCAGCCAGCACAAGGAGCCCGGTATG
ATCGACGTCGTCAGCACGCGTTGCCAAGAACCGCGTCCGTCCGTCTGCAG
CGGGCACCGAGAGACCGGCATGGTGGACATCGTGTCCCGACGCTGCAGGG
AACCAGAGTGCGGGAGACGGCCCCTGTACAATCTCGACGGTCTGCGGCCG
GTCTGCTGCAGCCAGCACAAGGAGCCCGGTATGATCGACGTCGTCAGCAC
GCGTTGCCAAGAACCGGGGTGCTTTTGCCACCCGTCCTTCGGCTACCCCT
CGGATAAGAAAGCTCGCCGTTGCGCTAGGCACCGCTTGGAGAACATGGAG
GGTGTCAAGGGGCATCGACACAAACGTCGGAAGGAGGCAGGGTGCTTTTG
CCACCCGTCCTTCGGCTACCCCTCGGATAAGAAAGCTCGCCGTTGCGCTA
GGCACCGCTTGGAGAACATGGAGGGTGTCAAGGGGCATCGACACAAACGT
CGGAAGGAGGCA
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