mRNA_H-elongata_contig63260.13899.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63260.13899.1
Unique NamemRNA_H-elongata_contig63260.13899.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 100 bits (249), Expect = 4.140e-23
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 HIVHAMAAASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGR-PNIALPASIVNNTELLSEVERVNQEQN 210
            H +HAMAA SSSTRHAWYAKWQ HRVLRPEAYGG++HFV      ++ LPASIV+NTELL+ VE +NQ QN
Sbjct:  355 HYIHAMAAGSSSTRHAWYAKWQVHRVLRPEAYGGLLHFVINNLIDDVPLPASIVSNTELLNAVESLNQAQN 425          
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.660e-18
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 HIVHAMAAASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGRPNIALPASIVNNTELLSEV 186
            HI+ ++AA+SSSTRHAWYAKWQ HRVLRPEAYGG+VH    GR +  LP +I+ NTELL+ V
Sbjct:  355 HILTSLAASSSSTRHAWYAKWQVHRVLRPEAYGGLVHNTLTGRLHTPLPKAILQNTELLNRV 416          
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Match: A0A3G3BM34_SACJA (Vanadium-dependent bromine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM34_SACJA)

HSP 1 Score: 83.6 bits (205), Expect = 3.760e-17
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 HIVHAMAAASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGRPNIALPASIVNNTELLSEVERVNQEQN 210
            HI+ AM +ASSSTRHAWY KWQ HR+LRPEAYGG+VH          LP SI+ NTELL+ VE  NQ+ N
Sbjct:  389 HILTAMGSASSSTRHAWYQKWQVHRMLRPEAYGGLVHNTLMKNVITPLPDSILRNTELLNRVEVHNQKMN 458          
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Match: Q7X9V0_9PHAE (Vanadium-dependent bromoperoxidase 2 n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7X9V0_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.760e-17
Identity = 44/70 (62.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 HIVHAMAAASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGRPNIALPASIVNNTELLSEVERVNQEQN 210
            HI+ AMA+ASSSTRHAWYAKWQ HR+LRPEAYG +VH          LP SI+ NTELL+ VE  NQ  N
Sbjct:  390 HILTAMASASSSTRHAWYAKWQVHRMLRPEAYGALVHNTLMRDVITPLPDSILRNTELLNRVEVHNQRMN 459          
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Match: A0A411NJW8_SACJA (Vanadium-dependent bromoperoxidase (Fragment) n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A411NJW8_SACJA)

HSP 1 Score: 83.6 bits (205), Expect = 3.760e-17
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 HIVHAMAAASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGRPNIALPASIVNNTELLSEVERVNQEQN 210
            HI+ AM +ASSSTRHAWY KWQ HR+LRPEAYGG+VH          LP SI+ NTELL+ VE  NQ+ N
Sbjct:  400 HILTAMGSASSSTRHAWYQKWQVHRMLRPEAYGGLVHNTLMKNVITPLPDSILRNTELLNRVEVHNQKMN 469          
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Match: B7ZGM5_9PHAE (Putative vanadium-dependent bromoperoxidase 7 (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.030e-17
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 HIVHAMAAASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGRPNIALPASIVNNTELLSEVERVNQEQN 210
            HI+ AMA++SSSTRHAWY KWQ HRVLRPEAYGG++H          LP SI+ NT+LLS VE  N   N
Sbjct:  139 HILAAMASSSSSTRHAWYTKWQVHRVLRPEAYGGLLHNTLMKDVITPLPQSILGNTDLLSRVEANNMRMN 208          
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.160e-15
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 HIVHAMAAASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGRPNIALPASIVNNTELLSEV 186
            HI+ AMA++SSSTRHAWY KWQ HRVLRP+AYGG++H          LP SI+ NT+LLS V
Sbjct:  356 HILAAMASSSSSTRHAWYTKWQVHRVLRPQAYGGLLHNTLMKDVITPLPQSILGNTDLLSRV 417          
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Match: A0A7S4V9V9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V9V9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.010e-9
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    4 IVHAMAAASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGRPNIALPASIVNNTEL 174
            ++H +A  S +  H WY+KW  HR LRPEA+GG+VH  + G+ +  L ASI N+  L
Sbjct:  220 MLHQLAHVSDAEAHPWYSKWNVHRFLRPEAFGGLVHLKKTGQRDYPLHASIFNSAVL 276          
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Match: A0A7S4V1Y5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V1Y5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.930e-8
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    4 IVHAMAAASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGRPNIALPASIVNNTEL 174
            ++H +A  S +  H WYAKW  HR LRPEA+GG+VH  + G+ +  L  SI ++  L
Sbjct:   18 MMHQLAHVSDAVAHPWYAKWNVHRFLRPEAFGGLVHLKKTGQRDYPLHDSIFDSNVL 74          
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Match: A0A2V9DH74_9BACT (Phosphoesterase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9DH74_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 3.230e-5
Identity = 20/47 (42.55%), Postives = 29/47 (61.70%), Query Frame = 1
Query:   25 ASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGRPNIALPASIVNN 165
            A+ + +  WY KW  HR +RPE +GG+VHF R G  +  L   I+N+
Sbjct:  332 ATRALKAVWYEKWFVHRTVRPEEFGGLVHFTRTGEASHPLHPDILNS 378          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63260.13899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
K7ZUA3_ASCNO4.140e-2370.42Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
D8LTP5_ECTSI1.660e-1866.13Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]
A0A3G3BM34_SACJA3.760e-1761.43Vanadium-dependent bromine peroxidase n=1 Tax=Sacc... [more]
Q7X9V0_9PHAE3.760e-1762.86Vanadium-dependent bromoperoxidase 2 n=2 Tax=Lamin... [more]
A0A411NJW8_SACJA3.760e-1761.43Vanadium-dependent bromoperoxidase (Fragment) n=3 ... [more]
B7ZGM5_9PHAE8.030e-1760.00Putative vanadium-dependent bromoperoxidase 7 (Fra... [more]
B7ZGM1_9PHAE2.160e-1561.29Putative vanadium-dependent bromoperoxidase 3 n=4 ... [more]
A0A7S4V9V9_9STRA5.010e-945.61Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4V1Y5_9STRA2.930e-843.86Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2V9DH74_9BACT3.230e-542.55Phosphoesterase n=1 Tax=Acidobacteria bacterium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63260contigH-elongata_contig63260:617..1297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue5.9e-15
Seed eggNOG ortholog2880.D8LTP5
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size211
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63260.13899.1prot_H-elongata_contig63260.13899.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63260 632..1297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.8377151-UTR-H-elongata_contig63260:616..6311622931015.8377151-UTR-H-elongata_contig63260:616..631Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63260 617..631 +
1691679663.1804547-UTR-H-elongata_contig63260:616..6311691679663.1804547-UTR-H-elongata_contig63260:616..631Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63260 617..631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.8597114-CDS-H-elongata_contig63260:631..6761622931015.8597114-CDS-H-elongata_contig63260:631..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 632..676 +
1691679663.18907-CDS-H-elongata_contig63260:631..6761691679663.18907-CDS-H-elongata_contig63260:631..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 632..676 +
1622931015.874177-CDS-H-elongata_contig63260:908..10161622931015.874177-CDS-H-elongata_contig63260:908..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 909..1016 +
1691679663.1965575-CDS-H-elongata_contig63260:908..10161691679663.1965575-CDS-H-elongata_contig63260:908..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 909..1016 +
1622931015.889479-CDS-H-elongata_contig63260:1255..12971622931015.889479-CDS-H-elongata_contig63260:1255..1297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 1256..1297 +
1691679663.2040985-CDS-H-elongata_contig63260:1255..12971691679663.2040985-CDS-H-elongata_contig63260:1255..1297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 1256..1297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63260.13899.1

>prot_H-elongata_contig63260.13899.1 ID=prot_H-elongata_contig63260.13899.1|Name=mRNA_H-elongata_contig63260.13899.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MAAASSSTRHAWYAKWQTHRVLRPEAYGGIVHFVREGRPNIALPASIVNN
TELLSEVERVNQEQN
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mRNA from alignment at H-elongata_contig63260:617..1297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63260.13899.1 ID=mRNA_H-elongata_contig63260.13899.1|Name=mRNA_H-elongata_contig63260.13899.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at H-elongata_contig63260:617..1297+ (Himanthalia elongata Himel1 dioecious)
CACATCGTGCATGCCATGGCCGCCGCAAGCTCCTCCACTCGCCATGCGTG GTACGCAAAGGTGGGCAGGGATCGCGTAAATTCGGGAAGATGACCGGCCT CAAAGGTTGTCCGATGACGAAAAAGGGTGGAAGTATGCTGCCAGAGGATC GAGCTTTCCTCGCCAGGAACGACTCAAGCGTTTCTGTCACCTCGACTTCC ACCTGAGAGTATTCCCGTCCCTTTTCCCTTGCATGTTTTTACTCTTTTTC GCACCTTACAACCAATTAAAACGTCCTGCGCTGGCTCGGCAGTGGCAAAC GCACCGTGTCCTCCGGCCCGAGGCCTACGGTGGTATTGTGCACTTCGTAC GTGAAGGCAGGCCGAACATCGCGCTGCCCGCGTCGATCGTCAACAATACG GTATGTCACACTATGGGTCCACTGTTCAGTTTTGAAACCGCATCAAAGCA TTGTTTATCACGCGTTAAATCATCGGTGTCACCCTAGGAGTGGAAGAGAA GGCATACAGTCCTTATGCCCTAAACATACCCACTCTCGGCCAAAGTCTCG TTATCCTATATTTATTCAGATCATTTAATGTACGCACGAGTCGTTCGTGT GCCCATGCTCGGATCATGGATTTCTGCCGCGTCGTTCAGGAACTTCTCAG CGAAGTGGAGAGGGTCAACCAGGAGCAGAAT
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Coding sequence (CDS) from alignment at H-elongata_contig63260:617..1297+

>mRNA_H-elongata_contig63260.13899.1 ID=mRNA_H-elongata_contig63260.13899.1|Name=mRNA_H-elongata_contig63260.13899.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig63260:617..1297+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGCCGCAAGCTCCTCCACTCGCCATGCGTGGTACGCAAAGATGGC
CGCCGCAAGCTCCTCCACTCGCCATGCGTGGTACGCAAAGTGGCAAACGC
ACCGTGTCCTCCGGCCCGAGGCCTACGGTGGTATTGTGCACTTCGTACGT
GAAGGCAGGCCGAACATCGCGCTGCCCGCGTCGATCGTCAACAATACGTG
GCAAACGCACCGTGTCCTCCGGCCCGAGGCCTACGGTGGTATTGTGCACT
TCGTACGTGAAGGCAGGCCGAACATCGCGCTGCCCGCGTCGATCGTCAAC
AATACGGAACTTCTCAGCGAAGTGGAGAGGGTCAACCAGGAGCAGAATGA
ACTTCTCAGCGAAGTGGAGAGGGTCAACCAGGAGCAGAAT
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