mRNA_H-elongata_contig63260.13898.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63260.13898.1
Unique NamemRNA_H-elongata_contig63260.13898.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 100 bits (250), Expect = 3.030e-23
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    4 KTLMPDVDYMTGVVTWLDVQNGVLAPDPQFVDEPLFIRNGRDLAALAFNDVLYTEALRTVLILLENKIL 210
            KTL+P+++YMTGV TWL++QNG    D  FVDEPLFIRNGRDLAAL+FNDVLYTEA RT+LIL    IL
Sbjct:  265 KTLVPEMEYMTGVDTWLNIQNGGPPEDTLFVDEPLFIRNGRDLAALSFNDVLYTEAFRTILILFNESIL 333
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BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.780e-16
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 QKTLMPDVDYMTGVVTWLDVQNGVLAPDPQFVDE--PLFIRNGRDLAALAFNDVLYTEALRTVLILLENKIL 210
            Q TL+ ++DYMT    WLDVQNG      +FVDE  PLFIRNGRDLAALAF D+LYTEA R  L++    IL
Sbjct:  261 QVTLVKEMDYMTTFQDWLDVQNGASKVKTEFVDEDKPLFIRNGRDLAALAFTDLLYTEAFRAALVMFRQGIL 332
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BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: B7ZGM5_9PHAE (Putative vanadium-dependent bromoperoxidase 7 (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM5_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.020e-15
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    7 TLMPDVDYMTGVVTWLDVQNGVLAPDPQFVD--EPLFIRNGRDLAALAFNDVLYTEALRTVLILLENKIL 210
            TL+P +DYMT    WLDVQNG      +F+D  EPLFIRNGRDLA L+FND LYTEA R  LIL    +L
Sbjct:   47 TLVPRMDYMTAFQPWLDVQNGDSDVVTEFIDPAEPLFIRNGRDLANLSFNDQLYTEAFRAALILFSESVL 116
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BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.160e-15
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    7 TLMPDVDYMTGVVTWLDVQNGVLAPDPQFVD--EPLFIRNGRDLAALAFNDVLYTEALRTVLILLENKIL 210
            TL+P +DYMT    WLDVQNG      +F+D  EPLFIRNGRDLA L+FND LYTEA R  LIL    +L
Sbjct:  264 TLVPRMDYMTAFQPWLDVQNGDSDVVTEFIDPAEPLFIRNGRDLANLSFNDQLYTEAFRAALILFSESVL 333
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BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: A0A411NJW8_SACJA (Vanadium-dependent bromoperoxidase (Fragment) n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A411NJW8_SACJA)

HSP 1 Score: 69.7 bits (169), Expect = 2.830e-12
Identity = 38/62 (61.29%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   10 LMPDVDYMTGVVTWLDVQNGVLAPDPQFVDE-PLFIRNGRDLAALAFNDVLYTEALRTVLIL 192
            L P VDYMT    WLDVQNG    D     E P FIRNGRDLA++AF D+LYTEA R  LIL
Sbjct:  310 LAPGVDYMTSFQPWLDVQNGASDVDTIIDKENPRFIRNGRDLASIAFRDLLYTEAFRAALIL 371
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BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: A0ZCI9_NODSP (Uncharacterized protein n=2 Tax=Nodularia spumigena TaxID=70799 RepID=A0ZCI9_NODSP)

HSP 1 Score: 58.2 bits (139), Expect = 3.300e-8
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    1 QKTLMPDVDYMTGVVTWLDVQNGVLAPDPQFVDEPLFIRNGRDLAALAFNDVLYTEALRTVLILLEN 201
            QKT+ PD++Y+T    WL+VQNG LA   +F   P +IRN RD+      D LY   L   LILL++
Sbjct:  229 QKTVQPDINYLTDYDEWLNVQNGGLAGADKFDPTPRYIRNIRDIGQYVHVDALYEAYLNACLILLDD 295
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BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: A0A1Z4GLJ9_9CYAN (Twin-arginine translocation pathway signal n=4 Tax=Nostocales TaxID=1161 RepID=A0A1Z4GLJ9_9CYAN)

HSP 1 Score: 53.9 bits (128), Expect = 1.030e-6
Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:    1 QKTLMPDVDYMTGVVTWLDVQNGVLAPDPQFVDEPLFIRNGRDLAALAFNDVLYTEALRTVLILL 195
            QKT+ P++DY+T   +WL +QNG  A    F   P +IRN RD+      D LY   L   LILL
Sbjct:  232 QKTVAPNIDYLTDYNSWLSIQNGGAAKQDVFDPTPRYIRNLRDIGQYVHVDALYEAYLNACLILL 296
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BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: UPI00187FF134 (vanadium-dependent haloperoxidase n=1 Tax=unclassified Nodularia TaxID=2656917 RepID=UPI00187FF134)

HSP 1 Score: 53.5 bits (127), Expect = 1.410e-6
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    1 QKTLMPDVDYMTGVVTWLDVQNGVLAP--DPQFVDEPLFIRNGRDLAALAFNDVLYTEALRTVLILLENK 204
            QKT++PD++Y+T    WL+VQNG   P    +F   P +IRN RD+      D LY   L   LILL+ K
Sbjct:  232 QKTVLPDINYLTDYDDWLNVQNGDSDPIGKDKFDPTPRYIRNIRDIGQYVHVDALYEAYLNACLILLDIK 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
K7ZUA3_ASCNO3.030e-2371.01Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
D8LTP5_ECTSI1.780e-1659.72Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]
B7ZGM5_9PHAE1.020e-1560.00Putative vanadium-dependent bromoperoxidase 7 (Fra... [more]
B7ZGM1_9PHAE1.160e-1560.00Putative vanadium-dependent bromoperoxidase 3 n=4 ... [more]
A0A411NJW8_SACJA2.830e-1261.29Vanadium-dependent bromoperoxidase (Fragment) n=3 ... [more]
A0ZCI9_NODSP3.300e-844.78Uncharacterized protein n=2 Tax=Nodularia spumigen... [more]
A0A1Z4GLJ9_9CYAN1.030e-643.08Twin-arginine translocation pathway signal n=4 Tax... [more]
UPI00187FF1341.410e-642.86vanadium-dependent haloperoxidase n=1 Tax=unclassi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63260contigH-elongata_contig63260:39..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue4.7e-12
Seed eggNOG ortholog2880.D8LTP5
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63260.13898.1prot_H-elongata_contig63260.13898.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63260 51..553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.7511952-UTR-H-elongata_contig63260:38..501622931015.7511952-UTR-H-elongata_contig63260:38..50Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63260 39..50 +
1691679663.1512032-UTR-H-elongata_contig63260:38..501691679663.1512032-UTR-H-elongata_contig63260:38..50Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63260 39..50 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.7719514-CDS-H-elongata_contig63260:50..1011622931015.7719514-CDS-H-elongata_contig63260:50..101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 51..101 +
1691679663.160036-CDS-H-elongata_contig63260:50..1011691679663.160036-CDS-H-elongata_contig63260:50..101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 51..101 +
1622931015.7869682-CDS-H-elongata_contig63260:406..5531622931015.7869682-CDS-H-elongata_contig63260:406..553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 407..553 +
1691679663.1721144-CDS-H-elongata_contig63260:406..5531691679663.1721144-CDS-H-elongata_contig63260:406..553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 407..553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63260.13898.1

>prot_H-elongata_contig63260.13898.1 ID=prot_H-elongata_contig63260.13898.1|Name=mRNA_H-elongata_contig63260.13898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MPDVDYMTGVVTWLDVQNGVLAPDPQFVDEPLFIRNGRDLAALAFNDVLY
TEALRTVLILLENKIL
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mRNA from alignment at H-elongata_contig63260:39..553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63260.13898.1 ID=mRNA_H-elongata_contig63260.13898.1|Name=mRNA_H-elongata_contig63260.13898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=515bp|location=Sequence derived from alignment at H-elongata_contig63260:39..553+ (Himanthalia elongata Himel1 dioecious)
CAGAAGACCCTTATGCCTGATGTAGATTACATGACCGGAGTTGTTACGTG
GCTCGATGTTCAGGTGGGGCTGCAATCCGTACGGGATATGTGCCTTTTTG
CAACGCCATGCACTTGCTCGAACGGTTCCAATCTACAACGCTACCAAGGT
CTTACGCAGTAGCTTCCAGAATGATTTCAAGTTTCACAAGCACGTTTACC
TTTCAGTCAAATTAATGCCTTGGCTCGCAGATAGTATTTTACAGACACTA
TCAACTCTGCGCTCGATAGGCCAGATGTATATGTTTGCACGCGAAAGACT
GATGACACATCATGGAGGGTTTTTTAACTCGAACTATATGCTCCAAATTT
CCTCGATCCCTCCCGCAGAACGGTGTCTTGGCACCAGACCCCCAATTCGT
AGACGAGCCCCTCTTCATCCGCAATGGACGTGACCTGGCCGCTCTCGCCT
TCAACGATGTCCTCTACACCGAAGCCCTCCGCACAGTTCTTATTTTGCTC
GAGAACAAAATCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig63260:39..553+

>mRNA_H-elongata_contig63260.13898.1 ID=mRNA_H-elongata_contig63260.13898.1|Name=mRNA_H-elongata_contig63260.13898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig63260:39..553+ (Himanthalia elongata Himel1 dioecious)
ATGCCTGATGTAGATTACATGACCGGAGTTGTTACGTGGCTCGATGTTCA
GATGCCTGATGTAGATTACATGACCGGAGTTGTTACGTGGCTCGATGTTC
AGAACGGTGTCTTGGCACCAGACCCCCAATTCGTAGACGAGCCCCTCTTC
ATCCGCAATGGACGTGACCTGGCCGCTCTCGCCTTCAACGATGTCCTCTA
CACCGAAGCCCTCCGCACAGTTCTTATTTTGCTCGAGAACAAAATCCTCA
ACGGTGTCTTGGCACCAGACCCCCAATTCGTAGACGAGCCCCTCTTCATC
CGCAATGGACGTGACCTGGCCGCTCTCGCCTTCAACGATGTCCTCTACAC
CGAAGCCCTCCGCACAGTTCTTATTTTGCTCGAGAACAAAATCCTC
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