prot_H-elongata_contig63166.13892.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63166.13892.1
Unique Nameprot_H-elongata_contig63166.13892.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length423
Homology
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BLAST of mRNA_H-elongata_contig63166.13892.1 vs. uniprot
Match: D7FKH1_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH1_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 7.910e-87
Identity = 198/349 (56.73%), Postives = 226/349 (64.76%), Query Frame = 0 
Query:   78 DGRAGYTLLMLAQRERIAAAAALEETQKQQ----RSRAPIPGSSWPGDEMGF-DYRSRWEAPSSSSASFSTN---GAPTPGSSGSFTNPPSSSSGNFLGSQHRSHDGS----------------------ALCDQGSSSQDSQASKNSINQWVWTGQPRGTSVVARRPPPLKNPADAGVLGIAGRPPSG--PDSLGDSPGADWTKPTSTQSAQALYPA-KRHCSPRRRSFSHSPEPGSRSMMGMPANMA----SSPASPNMGPIMGMSSATGGTPSPSGAMGIPTPPGSXXSAALPPPHGAPRRSAQRLPNPQFPNRALPRTSSGGPPRPPRSLSPGGVTTARSGNEGF 389
            DG AGYTLLMLAQRER+A                R RAP  GS WPG +M + DYR RWEA  SS +S  T+   G P PG         SSSSG+FL SQ     G                          + GS+ QD +A+ ++   WVWT QPRG+S  ARRPPPLKNPA+AGVLGIAGR  S     + GDSPGA+WTKP+STQSA A+YPA KRHCSPRRRSFSHSPEPGSR+M G+  +MA    SSPASPN   IM +  A+GGTPSP GAMGIPTPPGS  SAALPPPH A R +AQRLP PQF NRA+PR+SSGGPPRPPRSLSPGGV +     +GF
Sbjct:  183 DGGAGYTLLMLAQRERLAXXXXXXXXXXXXXXXARDRAPASGS-WPGKDMPYSDYRPRWEAAGSSGSSGGTSFSGGQPAPGGRTGTFGSNSSSSGSFLSSQRSGGGGGDSGSFTGEXXXXXXXXXXXXXXXXGEPGSAGQDGKAAAHNPQPWVWTAQPRGSSQGARRPPPLKNPAEAGVLGIAGRQQSPLLDSTRGDSPGAEWTKPSSTQSAHAMYPAVKRHCSPRRRSFSHSPEPGSRTMAGLTGSMAGLQASSPASPN---IMSLG-ASGGTPSP-GAMGIPTPPGSSGSAALPPPHRARRSTAQRLPQPQFQNRAVPRSSSGGPPRPPRSLSPGGVASTARSPDGF 525
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BLAST of mRNA_H-elongata_contig63166.13892.1 vs. uniprot
Match: A0A7S3Y5C3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5C3_HETAK)

HSP 1 Score: 56.2 bits (134), Expect = 2.910e-5
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 0 
Query:    6 MVDVVNKRCQHVGCKKRPVFGFEGE-KGRFCSLHR 39
            MVDVVN+RC+  GCKK PV+ FEGE KGRFC  H+
Sbjct:    1 MVDVVNRRCEVPGCKKHPVYNFEGEPKGRFCGFHK 35
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63166.13892.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKH1_ECTSI7.910e-8756.73EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH1... [more]
A0A7S3Y5C3_HETAK2.910e-568.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63166contigH-elongata_contig63166:122..1803 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63166.13892.1mRNA_H-elongata_contig63166.13892.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63166 122..1803 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63166.13892.1 ID=prot_H-elongata_contig63166.13892.1|Name=mRNA_H-elongata_contig63166.13892.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=423bp
MQSEGMVDVVNKRCQHVGCKKRPVFGFEGEKGRFCSLHRSGGMVDVVSRR
CDSPGCKRQPSGTTDATQVQFCSLHRGDGRAGYTLLMLAQRERIAAAAAL
EETQKQQRSRAPIPGSSWPGDEMGFDYRSRWEAPSSSSASFSTNGAPTPG
SSGSFTNPPSSSSGNFLGSQHRSHDGSALCDQGSSSQDSQASKNSINQWV
WTGQPRGTSVVARRPPPLKNPADAGVLGIAGRPPSGPDSLGDSPGADWTK
PTSTQSAQALYPAKRHCSPRRRSFSHSPEPGSRSMMGMPANMASSPASPN
MGPIMGMSSATGGTPSPSGAMGIPTPPGSSGSAALPPPHGAPRRSAQRLP
NPQFPNRALPRTSSGGPPRPPRSLSPGGVTTARSGNEGFYVGRSPISNVG
FSPSGPQSANSIGGFSGVFSPGN
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