mRNA_H-elongata_contig63160.13891.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63160.13891.1
Unique NamemRNA_H-elongata_contig63160.13891.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 5.200e-47
Identity = 78/88 (88.64%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:   13 PRRCVTQVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 276
            P   + +VGGVTILLDCGWDIHFDTALLEPLR VVKR+DLVL+SHPDLEHLG LPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR
Sbjct:  144 PVSSILEVGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 231
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BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.680e-32
Identity = 61/88 (69.32%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:   13 PRRCVTQVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 276
            P   + +VG VTILLDCGWDI FD +LL PL SVV RVDLVL+SH DLEHLG LPYA GKLG++A V+ATLP  KMGQM VYDA+  R
Sbjct:   66 PVCSLLEVGDVTILLDCGWDIDFDESLLAPLASVVSRVDLVLISHADLEHLGGLPYAVGKLGLKAPVFATLPTLKMGQMTVYDAHQMR 153
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BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A3R6Y0V8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6Y0V8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.490e-30
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:   31 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 276
            +V  + ILLDCGW   FD ALLEPL  V+ +VDLVL+SHPDL H+GALPYA G LG++A VY TLPV++MG++ +Y+AY +R
Sbjct:   24 EVDDIGILLDCGWTDDFDVALLEPLAKVIDKVDLVLISHPDLAHMGALPYAMGTLGLKAPVYVTLPVYRMGEIVLYEAYQAR 105
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BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: C1FDL7_MICCC (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FDL7_MICCC)

HSP 1 Score: 120 bits (301), Expect = 9.870e-30
Identity = 57/84 (67.86%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:   25 VTQVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 276
            V  + G  ILLDCGW+  FD  LLEPL  V   VD VL+SHPD EHLGALPYAFGKLGMR KVYATLPV KMG M +YD ++SR
Sbjct:   27 VLDLDGFKILLDCGWNDSFDVNLLEPLAKVAAEVDAVLISHPDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSR 110
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BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A6A5AL47_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AL47_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.450e-29
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:   31 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 276
            +V  + ILLDCGW   FD ALLEPL  V+ +VDLVL+SHPDL H+GALPYA G LG++A VY TLPV++MG++ +Y+AY +R
Sbjct:   24 EVDDIGILLDCGWTDDFDVALLEPLAKVIDKVDLVLISHPDLAHMGALPYAMGTLGLKAPVYVTLPVYRMGEIVLYEAYQAR 105
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BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A8K1FDQ3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDQ3_PYTOL)

HSP 1 Score: 117 bits (293), Expect = 1.220e-28
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:   25 VTQVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 276
            V +V  V ILLDCGW   +D  LL+PL  VV+RVDLVL+SHPDL H+GALPYA GKLG+ A +Y TLPV +MGQ+A+Y+AY+++
Sbjct: 1324 VLEVDDVCILLDCGWTDEYDEELLKPLARVVERVDLVLISHPDLAHMGALPYAIGKLGLNAPIYGTLPVHRMGQIALYEAYLAK 1407
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BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A425C362_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425C362_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.010e-28
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:   31 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 276
            +V  + ILLDCGW   FD ALLEPL  V+ +VDLVL+SHPDL H+GALPYA G LG++A VY TLPV++MG++ +Y+AY +R
Sbjct:   24 EVDDIGILLDCGWTDDFDVALLEPLAKVIDKVDLVLISHPDLAHMGALPYAMGTLGLKAPVYVTLPVYRMGEIVLYEAYQAR 105
[Close]
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: M2XHI7_GALSU (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHI7_GALSU)

HSP 1 Score: 116 bits (291), Expect = 2.180e-28
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   31 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 276
            ++    ILLDCGW+  F+  LLEPLR +  RVD VL+SHPDL HLGALPYA  KLG+RA  YATLPVW+MGQ+ +YDA+ SR
Sbjct:   25 EIDDFRILLDCGWNDRFEETLLEPLRRIAPRVDAVLISHPDLFHLGALPYAVAKLGLRAPTYATLPVWRMGQLFMYDAHQSR 106
[Close]
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A090N2Q4_OSTTA (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N2Q4_OSTTA)

HSP 1 Score: 116 bits (291), Expect = 2.210e-28
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:   31 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 276
             + G  ILLDCGW   FD  +L+PL ++ K VD VL+SHPD  HLGALPYAFGKLGM  KVYATLPV KMGQM +YD +++R
Sbjct:   44 SIDGCNILLDCGWTDAFDVEMLKPLEAIAKDVDAVLISHPDTAHLGALPYAFGKLGMNCKVYATLPVHKMGQMYMYDHFLTR 125
[Close]
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A4RR19_OSTLU (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RR19_OSTLU)

HSP 1 Score: 116 bits (290), Expect = 2.940e-28
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   31 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 276
             + G  ILLDCGW+  FD  +L+PL ++  +VD VL+SHPD  HLGALPYAFGKLGM  KVYATLPV KMGQM +YD +++R
Sbjct:    6 SIDGCNILLDCGWNDKFDVDMLKPLAAIAPKVDAVLISHPDTAHLGALPYAFGKLGMNCKVYATLPVHKMGQMYMYDHFLTR 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA4_ECTSI5.200e-4788.64Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA3.680e-3269.32Cleavage and polyadenylation specificity factor su... [more]
A0A3R6Y0V8_9STRA3.490e-3060.98Cleavage and polyadenylation specificity factor su... [more]
C1FDL7_MICCC9.870e-3067.86Cleavage and polyadenylation specificity factor su... [more]
A0A6A5AL47_9STRA7.450e-2960.98Cleavage and polyadenylation specificity factor su... [more]
A0A8K1FDQ3_PYTOL1.220e-2861.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A425C362_9STRA2.010e-2860.98Cleavage and polyadenylation specificity factor su... [more]
M2XHI7_GALSU2.180e-2863.41Cleavage and polyadenylation specificity factor su... [more]
A0A090N2Q4_OSTTA2.210e-2863.41Cleavage and polyadenylation specificity factor su... [more]
A4RR19_OSTLU2.940e-2862.20Cleavage and polyadenylation specificity factor su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63160contigH-elongata_contig63160:147..1248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue6.7e-41
Seed eggNOG ortholog2880.D7FQA4
Preferred nameCPSF2
KEGG koko:K14402,ko:K17606
KEGG Pathwayko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG1236@1,KOG1135@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.111952-CDS-H-elongata_contig63160:146..2541622931015.111952-CDS-H-elongata_contig63160:146..254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63160 147..254 -
1691679662.9187198-CDS-H-elongata_contig63160:146..2541691679662.9187198-CDS-H-elongata_contig63160:146..254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63160 147..254 -
1622931015.1283798-CDS-H-elongata_contig63160:1080..12481622931015.1283798-CDS-H-elongata_contig63160:1080..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63160 1081..1248 -
1691679662.9309347-CDS-H-elongata_contig63160:1080..12481691679662.9309347-CDS-H-elongata_contig63160:1080..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63160 1081..1248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63160.13891.1prot_H-elongata_contig63160.13891.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63160 147..1248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63160.13891.1

>prot_H-elongata_contig63160.13891.1 ID=prot_H-elongata_contig63160.13891.1|Name=mRNA_H-elongata_contig63160.13891.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
KYHHPRRCVTQVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHP
DLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR
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mRNA from alignment at H-elongata_contig63160:147..1248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63160.13891.1 ID=mRNA_H-elongata_contig63160.13891.1|Name=mRNA_H-elongata_contig63160.13891.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1102bp|location=Sequence derived from alignment at H-elongata_contig63160:147..1248- (Himanthalia elongata Himel1 dioecious)
AAATACCATCACCCGCGACGGTGTGTGACGCAGGTCGGCGGCGTGACGAT
CCTGCTGGACTGCGGATGGGACATCCACTTCGACACTGCCTTGCTGGAGC
CCCTCCGCTCGGTGGTGAAGCGCGTCGACCTCGTGCTTGTCTCTCACCCC
GACCTGGAACATCTCGGGGTGGGTCCAACAATGCCGTAGGGTCAAGCGTA
CAAAATGTAGGTGTGGCGTGATATTTTTAAGGAAAAGGGCCAAAACAAGC
AGAGGGGGGCCGCCCGCCGGCGCCTTACGCACAGATCGTGGACGGTTGGC
CCTGAACATATTTTGTCAAGCATTAAAAGCAGTCGGGAAGCCTGGTTTTT
ATTACCGCCTTCCGATGGGTCAGGAATGCGCGGCTTAGGCTTGGACGAGA
GGATGTCGCTGGGTCGTTTTGACAAAACAGAAGAGAAGAGAGGGAGGGAG
GAGGCTAATACCAAGGAGGCTGCGAATTAGAATTTTCGGAGTTCATGTGC
GCGTTTTCGCTTGCTGCCATATACGTAGTACTACCTTTACTTCTTTCTCT
GTCATAGTATCTATCTCTCTCTGTCATAGTATCTATCTCTCTCCCTCTCT
GATTTTCTAGGAGGGTTGGCAGCATAATATAGGGGAACCGGGTACACAGC
CGTAACAGATCGTACGCGACGCGAACAGAAGCGATTACATAGAGACAGGG
TGCTATAGAATGATTGGTTTTGATCCGGCCGATGTTGATGCTGATGCGTG
AGAGCTTGCACGGGGAAGAGAGACGGAATGGATGAAATACCTATCACGGA
ATCTCTTTGGGGCATGCCCCGGGTGGTCGGGGGGTGTGGGGGATGCATAC
CCCTTTCTCAAAGGACCAACAAAATCCAAAGCGCAACTACCAGCGTTTCT
TGACCCTTGGACCTAAATGGGTACCGGTATATTGTTAGAGGTGGTGGGAG
GATTGTTAACCGCCGGGTGGCCGTGTGGTGACATTGATCGGCAGGCACTC
CCGTACGCGTTTGGCAAGCTCGGTATGCGCGCGAAGGTCTACGCAACGCT
GCCGGTATGGAAGATGGGGCAGATGGCGGTATACGACGCCTACATATCTC
GC
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Coding sequence (CDS) from alignment at H-elongata_contig63160:147..1248-

>mRNA_H-elongata_contig63160.13891.1 ID=mRNA_H-elongata_contig63160.13891.1|Name=mRNA_H-elongata_contig63160.13891.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig63160:147..1248- (Himanthalia elongata Himel1 dioecious)
AAATACCATCACCCGCGACGGTGTGTGACGCAGGTCGGCGGCGTGACGAT
CCTGCTGGACTGCGGATGGGACATCCACTTCGACACTGCCTTGCTGGAGC
CCCTCCGCTCGGTGGTGAAGCGCGTCGACCTCGTGCTTGTCTCTCACCCC
GACCTGGAACATCTCGGGAAATACCATCACCCGCGACGGTGTGTGACGCA
GGTCGGCGGCGTGACGATCCTGCTGGACTGCGGATGGGACATCCACTTCG
ACACTGCCTTGCTGGAGCCCCTCCGCTCGGTGGTGAAGCGCGTCGACCTC
GTGCTTGTCTCTCACCCCGACCTGGAACATCTCGGGGCACTCCCGTACGC
GTTTGGCAAGCTCGGTATGCGCGCGAAGGTCTACGCAACGCTGCCGGTAT
GGAAGATGGGGCAGATGGCGGTATACGACGCCTACATATCTCGCGCACTC
CCGTACGCGTTTGGCAAGCTCGGTATGCGCGCGAAGGTCTACGCAACGCT
GCCGGTATGGAAGATGGGGCAGATGGCGGTATACGACGCCTACATATCTC
GC
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