mRNA_H-elongata_contig117965.1389.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117965.1389.1
Unique NamemRNA_H-elongata_contig117965.1389.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117965.1389.1 vs. uniprot
Match: A0A6H5KKN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.740e-34
Identity = 74/166 (44.58%), Postives = 105/166 (63.25%), Query Frame = 1 
Query:    4 AVTGRLWTLNIISFVLAIGLGVAFIATSMSKSFYKWRMNACDVTGD-----QGNGVLNYEIDLTVDIGWRQMTATYVDPSAEQY--CFEDVGKGGVYDIGDFEDNSASAAGFGMAASWAIAVLVALFTTVAMLKAIGGNRKHGVSLVTLMNLMVLMTLGVIAATTV 480
            A+ GR++ + +   +  I LG AFIATSMS  F+KW +  C   G+       + ++++ +D+TVDIGWR+ T T +D   E    C  ++ +G  Y IGD++DN+AS AG GM ASWA+ VLVAL+T VA+L A  G R+ GVSL  L N   L T+G++ ATTV
Sbjct:    6 AIAGRMYHMALFFLLSTIVLGAAFIATSMSSRFFKWSVEGCSAFGNVAIPGSSDLIVDFNLDMTVDIGWREFTVTSLDQGTETMGECLGELKQGQTYSIGDYQDNNASLAGLGMVASWALGVLVALYTFVALLGARHGQRRGGVSLKMLTNWCALFTVGLVTATTV 171
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BLAST of mRNA_H-elongata_contig117965.1389.1 vs. uniprot
Match: D7G002_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G002_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 6.970e-34
Identity = 74/166 (44.58%), Postives = 103/166 (62.05%), Query Frame = 1 
Query:    4 AVTGRLWTLNIISFVLAIGLGVAFIATSMSKSFYKWRMNACDVTGD-----QGNGVLNYEIDLTVDIGWRQMTATYVDPSAEQY--CFEDVGKGGVYDIGDFEDNSASAAGFGMAASWAIAVLVALFTTVAMLKAIGGNRKHGVSLVTLMNLMVLMTLGVIAATTV 480
            A+ G ++ + +   +  I LG AFIATSMS  F+KW +  C   G+         ++ Y++D+TVDIGWR+ T T +D   E    C E++ +G  Y IGD++DN+AS AG GM ASWA+ VLVAL+T VA+L A  G R+ GVSL  L     L T+G++ ATTV
Sbjct:    6 AIAGSMYHMAMFFLLSTIVLGAAFIATSMSSRFFKWSVEGCAAFGNGDVPGSSERIIVYDLDVTVDIGWREFTVTTLDQGTETIGECLEELKQGQTYSIGDYQDNNASLAGLGMVASWALGVLVALYTFVALLGARHGQRRGGVSLKMLTKWCALFTVGLVTATTV 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117965.1389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKN1_9PHAE2.740e-3444.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G002_ECTSI6.970e-3444.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117965contigH-elongata_contig117965:318..1801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size510
Cds size510
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929687.8121378-CDS-H-elongata_contig117965:317..5361622929687.8121378-CDS-H-elongata_contig117965:317..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117965 318..536 -
1691679119.2908437-CDS-H-elongata_contig117965:317..5361691679119.2908437-CDS-H-elongata_contig117965:317..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117965 318..536 -
1622929687.835041-CDS-H-elongata_contig117965:1510..18011622929687.835041-CDS-H-elongata_contig117965:1510..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117965 1511..1801 -
1691679119.2982223-CDS-H-elongata_contig117965:1510..18011691679119.2982223-CDS-H-elongata_contig117965:1510..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117965 1511..1801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117965.1389.1prot_H-elongata_contig117965.1389.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117965 318..1801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117965.1389.1

>prot_H-elongata_contig117965.1389.1 ID=prot_H-elongata_contig117965.1389.1|Name=mRNA_H-elongata_contig117965.1389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MAVTGRLWTLNIISFVLAIGLGVAFIATSMSKSFYKWRMNACDVTGDQGN
GVLNYEIDLTVDIGWRQMTATYVDPSAEQYCFEDVGKGGVYDIGDFEDNS
ASAAGFGMAASWAIAVLVALFTTVAMLKAIGGNRKHGVSLVTLMNLMVLM
TLGVIAATTVSNSGRPIRD*
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mRNA from alignment at H-elongata_contig117965:318..1801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117965.1389.1 ID=mRNA_H-elongata_contig117965.1389.1|Name=mRNA_H-elongata_contig117965.1389.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1484bp|location=Sequence derived from alignment at H-elongata_contig117965:318..1801- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGACGGGGCGTCTTTGGACGTTAAACATCATTTCCTTCGTGCT
CGCCATTGGGCTCGGGGTTGCCTTCATCGCTACCTCGATGTCGAAGTCGT
TCTACAAGTGGAGGATGAATGCGTGCGATGTCACGGGCGACCAAGGGAAT
GGGGTGCTCAACTACGAGATCGATCTGACGGTTGACATCGGGTGGCGGCA
GATGACGGCGACGTACGTGGACCCTTCCGCAGAGCAGTATTGTTTCGAGG
ATGTGGGGAAGGGGGGCGTGTACGACATCGGTGACTTCGAGGTGAGGTGC
CTCGCTCCACATTTTTTACATGCCCAAAAGCCATAGACTCGCTGGCAGTA
GTATGGGGTTTCGGCGGTTCTTGAAAAGCTCGTGATGTGCAGTCAGCACC
GAAGATACTGTTCAATGCAGTGAAAACCCTGTGAACATCATCCACGCCTT
CATTACACACGAGGGATACAGTTAACCCTTCGGAAAGTAACCCCCTCAAT
TCGAACCGATTACTATGGTCTACGGACTGGAGTTTTGGTGAGGCGATGTC
CACTCGGGGAAAGGCTGTATGCAAAGCTGCAGCATTCTGGGAGGTTTGGG
TCAGGAACTGAGTCCGGTTTACGGCCTGGTGTATAAGTGGCAAAACATAC
CCCCGGGGGAAAAAAGGGGATCAACAAGTATCGTCAGGTTCGAGTGTATA
TATTATTGCTCCTACCTATAAGCAAAAAGTCTTCACAAGAAAATATTATT
AGACCGCAATAGAGGATCAGGGTACGAGCTTACCACCCAAAAACGTTTAA
CCCTTCCGGAACTGGATTTCAAGTTTTATATTGAATTTAGTATTTAAAAA
AGCACATCGAGTTCCACAGAGGTTAATTTTCCACTTTTGCCAATGTTTCT
CCAGTGACTTTCAATGAAGGCGATGTAATGGAGGGGATTCGATCATCCCC
GACATCTGACGGGGACCCACCATTTCATCGTTATTACTTGAAAGTCTCAT
GTGGCAACATCGGTCAAGTCGCTCAGGTTGAGTACGTAGTTCGACAGGAA
AATACAGTGTGGTCCTGCGCCAGCCCACCTCGAGAGCCTTGGGCCGAAGT
TACCAATGCCGATCCCAATGCCAGTGCCAAACCACGTGATGCAGTATTAA
TTACAATTTCAACTTAAATCTGTTTATAAACATAAATGTTTCTCCACGAC
CTGTGCCCCTCAGACATGATTTGCTTGGCAATATATGCATACGTGTCGAT
ATGATTTTTGGTCAGGACAACAGCGCGAGTGCTGCGGGTTTTGGCATGGC
TGCGTCCTGGGCCATCGCGGTACTGGTGGCACTCTTTACCACCGTAGCGA
TGTTGAAGGCAATCGGCGGGAACAGAAAACATGGCGTTAGCCTCGTCACG
CTCATGAATCTCATGGTCCTCATGACGCTCGGTGTCATCGCCGCCACCAC
GGTGAGCAACAGTGGACGCCCCATCAGGGATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig117965:318..1801-

>mRNA_H-elongata_contig117965.1389.1 ID=mRNA_H-elongata_contig117965.1389.1|Name=mRNA_H-elongata_contig117965.1389.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig117965:318..1801- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGACGGGGCGTCTTTGGACGTTAAACATCATTTCCTTCGTGCT
CGCCATTGGGCTCGGGGTTGCCTTCATCGCTACCTCGATGTCGAAGTCGT
TCTACAAGTGGAGGATGAATGCGTGCGATGTCACGGGCGACCAAGGGAAT
GGGGTGCTCAACTACGAGATCGATCTGACGGTTGACATCGGGTGGCGGCA
GATGACGGCGACGTACGTGGACCCTTCCGCAGAGCAGTATTGTTTCGAGG
ATGTGGGGAAGGGGGGCGTGTACGACATCGGTGACTTCGAGATGGCGGTG
ACGGGGCGTCTTTGGACGTTAAACATCATTTCCTTCGTGCTCGCCATTGG
GCTCGGGGTTGCCTTCATCGCTACCTCGATGTCGAAGTCGTTCTACAAGT
GGAGGATGAATGCGTGCGATGTCACGGGCGACCAAGGGAATGGGGTGCTC
AACTACGAGATCGATCTGACGGTTGACATCGGGTGGCGGCAGATGACGGC
GACGTACGTGGACCCTTCCGCAGAGCAGTATTGTTTCGAGGATGTGGGGA
AGGGGGGCGTGTACGACATCGGTGACTTCGAGGACAACAGCGCGAGTGCT
GCGGGTTTTGGCATGGCTGCGTCCTGGGCCATCGCGGTACTGGTGGCACT
CTTTACCACCGTAGCGATGTTGAAGGCAATCGGCGGGAACAGAAAACATG
GCGTTAGCCTCGTCACGCTCATGAATCTCATGGTCCTCATGACGCTCGGT
GTCATCGCCGCCACCACGGTGAGCAACAGTGGACGCCCCATCAGGGATTA
AGACAACAGCGCGAGTGCTGCGGGTTTTGGCATGGCTGCGTCCTGGGCCA
TCGCGGTACTGGTGGCACTCTTTACCACCGTAGCGATGTTGAAGGCAATC
GGCGGGAACAGAAAACATGGCGTTAGCCTCGTCACGCTCATGAATCTCAT
GGTCCTCATGACGCTCGGTGTCATCGCCGCCACCACGGTGAGCAACAGTG
GACGCCCCATCAGGGATTAA
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