mRNA_H-elongata_contig63153.13890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63153.13890.1
Unique NamemRNA_H-elongata_contig63153.13890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63153.13890.1 vs. uniprot
Match: A0A6H5K9J2_9PHAE (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J2_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.840e-40
Identity = 69/101 (68.32%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    4 RDTTLRKEADMGGEWINPYKSVVPRAGYYDINVLLEALKLKDCHVSVHAVFNPKDPHAVARSTENLDPRGSGGDVRGVVVNRVTISVLGGLVTGSHYYPII 306
            R+ T+RKE+ MG  W+NPYKSVVP+ GYYDIN LLEAL LK CHVS+HAVFNPK+P+AVA+S E+LDP  S G VRG+VVNRV+ S+LGGL T  H+Y II
Sbjct:   45 REATMRKESGMGRMWVNPYKSVVPQVGYYDINCLLEALNLKKCHVSLHAVFNPKEPNAVAKSLEHLDP--SLGGVRGIVVNRVSKSLLGGLYTTHHFYAII 143
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BLAST of mRNA_H-elongata_contig63153.13890.1 vs. uniprot
Match: D8LDY3_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY3_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 4.190e-37
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   34 MGGEWINPYKSVVPRAGYYDINVLLEALKLKDCHVSVHAVFNPKDPHAVARSTENLDPRGSGGDVRGVVVNRVTISVLGGLVTGSHYYPII 306
            MG  W+NPYKSVVP+ GYYDIN LLEALKLK CH+S+HAVFNPK+P+AVA+S E+LDP  S G VRG+VVNRV+ S+LGGL T  H+Y II
Sbjct:    1 MGRMWVNPYKSVVPQVGYYDINCLLEALKLKKCHISLHAVFNPKEPNAVAKSLEHLDP--SLGGVRGIVVNRVSKSLLGGLYTTHHFYAII 89
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BLAST of mRNA_H-elongata_contig63153.13890.1 vs. uniprot
Match: D7FI75_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI75_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.200e-20
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    4 RDTTLRKEADMGGEWINPYKSVVPRAGYYDINVLLEALKLKDCHVSVHAVFNPKDPHAVARSTENLDPRGSGGDVRGVVVNRVTISVLGGLVTGSHYYPII 306
            R+ TLR E+ +    INPYKSV+P  G YDINV+LEALKL++C VS+H VFN KDP A   +   +D       +RGV+VN V  S+L G     H+Y I+
Sbjct:   40 REATLRSESGLRRLLINPYKSVIPMVGDYDINVVLEALKLRECRVSLHVVFNAKDPTAFELALARVD--WDSATIRGVIVNFVCRSLLWGSWVTHHFYAIV 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63153.13890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9J2_9PHAE3.840e-4068.32Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDY3_ECTSI4.190e-3770.33Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
D7FI75_ECTSI2.200e-2048.51Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63153contigH-elongata_contig63153:2597..3273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.0169027-CDS-H-elongata_contig63153:2596..27371622931015.0169027-CDS-H-elongata_contig63153:2596..2737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63153 2597..2737 -
1691679662.8845747-CDS-H-elongata_contig63153:2596..27371691679662.8845747-CDS-H-elongata_contig63153:2596..2737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63153 2597..2737 -
1622931015.037599-CDS-H-elongata_contig63153:3108..32731622931015.037599-CDS-H-elongata_contig63153:3108..3273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63153 3109..3273 -
1691679662.8961778-CDS-H-elongata_contig63153:3108..32731691679662.8961778-CDS-H-elongata_contig63153:3108..3273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63153 3109..3273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63153.13890.1prot_H-elongata_contig63153.13890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63153 2597..3273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63153.13890.1

>prot_H-elongata_contig63153.13890.1 ID=prot_H-elongata_contig63153.13890.1|Name=mRNA_H-elongata_contig63153.13890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
DRDTTLRKEADMGGEWINPYKSVVPRAGYYDINVLLEALKLKDCHVSVHA
VFNPKDPHAVARSTENLDPRGSGGDVRGVVVNRVTISVLGGLVTGSHYYP
II
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mRNA from alignment at H-elongata_contig63153:2597..3273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63153.13890.1 ID=mRNA_H-elongata_contig63153.13890.1|Name=mRNA_H-elongata_contig63153.13890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=677bp|location=Sequence derived from alignment at H-elongata_contig63153:2597..3273- (Himanthalia elongata Himel1 dioecious)
GACCGTGATACCACTTTGCGAAAGGAAGCGGACATGGGGGGGGAATGGAT
CAATCCCTACAAATCAGTGGTTCCCAGGGCAGGATACTATGATATCAACG
TCCTGCTCGAGGCCCTTAAGCTGAAGGATTGCCACGTCAGCGTACACGCG
GTTTTCAACCCTAAGGTTCAAAAATTGTTGGGGTGTGAAATTTATTTCGG
GTGTGTGCGTGTACGCCCTCCATATTGCGGACCACGCAGCACGTGTTTCC
TTACTTTTTAGCCTTGAAATGGAATAGCCCAGTTCATGTGACAACGTAAA
AATTGTCCAAAAGCTCAAATTCCTCGTTTATGGTTGCAGGTATAGTAGCT
CGTAAGAAATAGCGACGACTTTGTGTCTACCTCGCTGTACGCAAGTCATC
TTCACGATGGTAATTTAATCTGTCGCCAACACACCAAACTCGCTGGTAAT
GCGCGCTAAACTATTTCGCCCCGTTCCCCCGCACCTCCACCCCCCGTTCG
AATCCGTCGGACGCCAATTTTCGTGACGTGCGTCAGGATCCACACGCGGT
CGCCCGCTCCACCGAGAACCTCGACCCTCGCGGCAGCGGTGGCGACGTCC
GTGGTGTCGTTGTCAACCGCGTCACCATATCCGTACTCGGCGGCCTCGTA
ACCGGCAGCCACTATTACCCCATAATA
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Coding sequence (CDS) from alignment at H-elongata_contig63153:2597..3273-

>mRNA_H-elongata_contig63153.13890.1 ID=mRNA_H-elongata_contig63153.13890.1|Name=mRNA_H-elongata_contig63153.13890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig63153:2597..3273- (Himanthalia elongata Himel1 dioecious)
GACCGTGATACCACTTTGCGAAAGGAAGCGGACATGGGGGGGGAATGGAT
CAATCCCTACAAATCAGTGGTTCCCAGGGCAGGATACTATGATATCAACG
TCCTGCTCGAGGCCCTTAAGCTGAAGGATTGCCACGTCAGCGTACACGCG
GTTTTCAACCCTAAGGACCGTGATACCACTTTGCGAAAGGAAGCGGACAT
GGGGGGGGAATGGATCAATCCCTACAAATCAGTGGTTCCCAGGGCAGGAT
ACTATGATATCAACGTCCTGCTCGAGGCCCTTAAGCTGAAGGATTGCCAC
GTCAGCGTACACGCGGTTTTCAACCCTAAGGATCCACACGCGGTCGCCCG
CTCCACCGAGAACCTCGACCCTCGCGGCAGCGGTGGCGACGTCCGTGGTG
TCGTTGTCAACCGCGTCACCATATCCGTACTCGGCGGCCTCGTAACCGGC
AGCCACTATTACCCCATAATAGATCCACACGCGGTCGCCCGCTCCACCGA
GAACCTCGACCCTCGCGGCAGCGGTGGCGACGTCCGTGGTGTCGTTGTCA
ACCGCGTCACCATATCCGTACTCGGCGGCCTCGTAACCGGCAGCCACTAT
TACCCCATAATA
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