mRNA_H-elongata_contig63123.13889.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63123.13889.1
Unique NamemRNA_H-elongata_contig63123.13889.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63123.13889.1 vs. uniprot
Match: A0A6H5JFE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE8_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.620e-17
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    4 LRRAAGANHVEIMDFLLEAGAPVDCVDRCLRTPLHWAAISGNIDATQV 147
            L RAAGANHV I+ +LL+AGAPVD  DRCLRTPLHWAAISG++DATQ+
Sbjct:   48 LHRAAGANHVGIILYLLQAGAPVDTADRCLRTPLHWAAISGHLDATQL 95
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BLAST of mRNA_H-elongata_contig63123.13889.1 vs. uniprot
Match: D7FGW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW9_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.760e-17
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    4 LRRAAGANHVEIMDFLLEAGAPVDCVDRCLRTPLHWAAISGNIDATQV 147
            L RAAGANHV I+ +LL+AGAPV+  DRCLRTPLHWAAISG++DATQ+
Sbjct:   41 LHRAAGANHVGIIIYLLQAGAPVNTADRCLRTPLHWAAISGHLDATQL 88
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BLAST of mRNA_H-elongata_contig63123.13889.1 vs. uniprot
Match: A0A6H5JSR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR0_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.310e-13
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    4 LRRAAGANHVEIMDFLLEAGAPVDCVDRCLRTPLHWAAISGNIDATQV 147
            L RAAG NHVEIM++L+E GAPVD  D+  RT LHWA ISG+ +AT +
Sbjct:   41 LHRAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDI 88
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BLAST of mRNA_H-elongata_contig63123.13889.1 vs. uniprot
Match: UPI001EEC167F (26S proteasome non-ATPase regulatory subunit 10-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEC167F)

HSP 1 Score: 47.4 bits (111), Expect = 9.520e-5
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    1 PLRRAAGA-NHVEIMDFLL-EAGAPVDCVDRCLRTPLHWAAISGNIDATQ 144
            PL  A G  N  EIMD LL      VDCVD+C RT LHWAA++ N+ A +
Sbjct:  150 PLHVAVGGRNDNEIMDLLLAHPKVNVDCVDKCGRTVLHWAAMTSNVVAVK 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63123.13889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JFE8_9PHAE5.620e-1777.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGW9_ECTSI5.760e-1775.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSR0_9PHAE3.310e-1362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001EEC167F9.520e-552.0026S proteasome non-ATPase regulatory subunit 10-li... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63123contigH-elongata_contig63123:2728..2880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue8.7e-14
Seed eggNOG ortholog2880.D7FGW9
KEGG koko:K21441
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.9700131-CDS-H-elongata_contig63123:2727..28801622931014.9700131-CDS-H-elongata_contig63123:2727..2880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63123 2728..2880 +
1691679662.8704195-CDS-H-elongata_contig63123:2727..28801691679662.8704195-CDS-H-elongata_contig63123:2727..2880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63123 2728..2880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63123.13889.1prot_H-elongata_contig63123.13889.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63123 2728..2880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63123.13889.1

>prot_H-elongata_contig63123.13889.1 ID=prot_H-elongata_contig63123.13889.1|Name=mRNA_H-elongata_contig63123.13889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
PLRRAAGANHVEIMDFLLEAGAPVDCVDRCLRTPLHWAAISGNIDATQVR
*
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mRNA from alignment at H-elongata_contig63123:2728..2880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63123.13889.1 ID=mRNA_H-elongata_contig63123.13889.1|Name=mRNA_H-elongata_contig63123.13889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig63123:2728..2880+ (Himanthalia elongata Himel1 dioecious)
CCACTCCGCAGGGCTGCTGGAGCCAACCACGTGGAAATTATGGATTTCCT
TCTTGAAGCCGGGGCTCCGGTCGACTGCGTGGACCGATGCCTCCGAACTC
CCCTCCACTGGGCGGCGATTAGCGGGAACATCGATGCGACTCAGGTGAGG
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig63123:2728..2880+

>mRNA_H-elongata_contig63123.13889.1 ID=mRNA_H-elongata_contig63123.13889.1|Name=mRNA_H-elongata_contig63123.13889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig63123:2728..2880+ (Himanthalia elongata Himel1 dioecious)
CCACTCCGCAGGGCTGCTGGAGCCAACCACGTGGAAATTATGGATTTCCT
TCTTGAAGCCGGGGCTCCGGTCGACTGCGTGGACCGATGCCTCCGAACTC
CCCTCCACTGGGCGGCGATTAGCGGGAACATCGATGCGACTCAGGTGAGG
TGACCACTCCGCAGGGCTGCTGGAGCCAACCACGTGGAAATTATGGATTT
CCTTCTTGAAGCCGGGGCTCCGGTCGACTGCGTGGACCGATGCCTCCGAA
CTCCCCTCCACTGGGCGGCGATTAGCGGGAACATCGATGCGACTCAGGTG
AGGTGA
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