prot_H-elongata_contig63113.13888.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63113.13888.1
Unique Nameprot_H-elongata_contig63113.13888.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length290
Homology
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BLAST of mRNA_H-elongata_contig63113.13888.1 vs. uniprot
Match: A0A6H5JT76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT76_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.480e-43
Identity = 139/293 (47.44%), Postives = 177/293 (60.41%), Query Frame = 0 
Query:    1 RWKEALELLEEMIAGGSGNSKSSLAGRGVAPSIVSYNAAISACARGRKPEFALELLEDMRQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMQREXXXXXXXXXXXXXXXXXXXXXXXXXXAVLEQVRAAGSPLSPSSLTGILTAXXXXXXXXXXXXXXXXXXXXXXAVSLDGRVVVPPTTAYAAAAKACARAGQGARARALIAELELAATTSSGG---VEKPTIECYNAVIAGFAIAGDMDDALKILREEVPKAGLRANTGSYNHLLTGCARAGRWETALALLNEQRTG 290
            RWKEA+ELLEEMIA G+ ++     G  V PS+VSYNAAI+AC+R  K   AL LL++M  RS    XXXXXXXXXXXXXXXXXXXXXXXXX  M+                             VLEQVR      S S++  +LT+                       ++  GR+  PP  AYAAAA ACARAGQG RARALIAEL+      +GG    ++PT+ECY+AV+ G A+AGD  +AL+IL+ +VPKAGL+ NT  +NH+L G A+ G W+TA+ +L+EQR+G
Sbjct:  196 RWKEAIELLEEMIAAGNDSN----GGPKVTPSVVSYNAAITACSRANKVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDPRPSASTMADVLTSAIAACVTEGAWEQATDWLTDIR-MARGGRL--PPPEAYAAAANACARAGQGVRARALIAELD------NGGKDEAQRPTLECYDAVVLGSALAGDPKEALRILKVDVPKAGLQPNTQGFNHVLQGFAKVGDWKTAVTVLDEQRSG 475
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63113.13888.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT76_9PHAE2.480e-4347.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 31..81
e-value: 1.0E-9
score: 38.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 227..250
e-value: 3.1E-4
score: 18.7
coord: 70..104
e-value: 1.0E-7
score: 29.7
coord: 34..68
e-value: 9.0E-8
score: 29.8
coord: 263..286
e-value: 1.1E-4
score: 20.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 263..286
e-value: 5.8E-4
score: 19.9
coord: 227..250
e-value: 8.4E-4
score: 19.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 68..102
score: 12.31
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 224..259
score: 9.536
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 103..137
score: 7.487
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..19
score: 5.546
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 260..290
score: 9.229
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 32..67
score: 9.876
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 182..216
score: 5.393
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 144..290
e-value: 6.0E-24
score: 87.1
coord: 1..143
e-value: 7.1E-35
score: 123.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 4..286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63113contigH-elongata_contig63113:632..2571 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63113.13888.1mRNA_H-elongata_contig63113.13888.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63113 632..2571 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63113.13888.1 ID=prot_H-elongata_contig63113.13888.1|Name=mRNA_H-elongata_contig63113.13888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=290bp
RWKEALELLEEMIAGGSGNSKSSLAGRGVAPSIVSYNAAISACARGRKPE
FALELLEDMRQRSGISPDLYSYAAALSALAKAGKPARALKLLDEMQREGV
APDSVCFAAAMEACETRGAWREAAAVLEQVRAAGSPLSPSSLTGILTAAI
ASCVAEGAWERAIDLLDDIRAVSLDGRVVVPPTTAYAAAAKACARAGQGA
RARALIAELELAATTSSGGVEKPTIECYNAVIAGFAIAGDMDDALKILRE
EVPKAGLRANTGSYNHLLTGCARAGRWETALALLNEQRTG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf