mRNA_H-elongata_contig63104.13887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63104.13887.1
Unique NamemRNA_H-elongata_contig63104.13887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63104.13887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63104contigH-elongata_contig63104:1638..2495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size839
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63104.13887.1prot_H-elongata_contig63104.13887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63104 1638..2365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.7750065-CDS-H-elongata_contig63104:1637..22731622931014.7750065-CDS-H-elongata_contig63104:1637..2273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63104 1638..2273 -
1691679662.7810886-CDS-H-elongata_contig63104:1637..22731691679662.7810886-CDS-H-elongata_contig63104:1637..2273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63104 1638..2273 -
1622931014.79494-CDS-H-elongata_contig63104:2293..23651622931014.79494-CDS-H-elongata_contig63104:2293..2365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63104 2294..2365 -
1691679662.8054368-CDS-H-elongata_contig63104:2293..23651691679662.8054368-CDS-H-elongata_contig63104:2293..2365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63104 2294..2365 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.812205-UTR-H-elongata_contig63104:2365..24951622931014.812205-UTR-H-elongata_contig63104:2365..2495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63104 2366..2495 -
1691679662.8168924-UTR-H-elongata_contig63104:2365..24951691679662.8168924-UTR-H-elongata_contig63104:2365..2495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63104 2366..2495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63104.13887.1

>prot_H-elongata_contig63104.13887.1 ID=prot_H-elongata_contig63104.13887.1|Name=mRNA_H-elongata_contig63104.13887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
MHPRAEPLFPAVTAATIQRQTPLPAKASVVLGDRADEAVSFGTLGADEPP
PPPPPLRSPPRGGSSNLNPPQRRLRGAYSGGTGRQGVGPQGIEVGAQGQQ
GGAVKRNGVHRLNSTARVEGSSVRERGVISVQGREDAEQGGGQVRASSCS
NGNSGRISSDEDGVGWWARPSTDKLLLIGGGEGGEEGGYLDGDTKRSGPV
RGLVGEGSADQNACSGRKWGYWRPDHGDSDKRGSNG
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mRNA from alignment at H-elongata_contig63104:1638..2495-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63104.13887.1 ID=mRNA_H-elongata_contig63104.13887.1|Name=mRNA_H-elongata_contig63104.13887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig63104:1638..2495- (Himanthalia elongata Himel1 dioecious)
CAGGTAGAAGCGCTCAAGCAAGATCTGGCGATAGTCGGAGTGCGTCAGCT
AGCCCTCGGTGGTCTGCCTCCCGCGAAGGGGGTTGCCACCGTGTTTAACA
GGACGGGGGAGGAGACCGACGACCCCTTGGATGCATCCACGCGCGGAGCC
CCTCTTTCCGGCCGTTACTGCCGCCACGATCCAGAGACAGACGCCGCTAC
CGGTCTCGAGCGAAGCCGTGAGGCCAAGGCTTCCGTAGTACTTGGTGATC
GAGCAGACGAGGCGGTTAGTTTTGGGACGCTTGGGGCAGACGAGCCGCCG
CCGCCGCCGCCGCCGTTGAGGTCACCTCCACGAGGCGGCTCTTCGAACCT
GAACCCCCCGCAGCGACGATTGCGGGGGGCGTACAGTGGCGGCACTGGCA
GGCAAGGGGTTGGGCCGCAGGGGATCGAGGTTGGAGCGCAGGGACAGCAA
GGAGGGGCCGTCAAGCGGAATGGGGTACATCGTCTGAATTCGACAGCGCG
GGTAGAGGGGAGCAGTGTGAGAGAGAGAGGAGTCATAAGTGTTCAAGGGC
GAGAGGATGCGGAACAGGGCGGCGGACAGGTACGCGCCAGCAGCTGCAGT
AACGGAAACAGCGGTAGAATATCATCAGACGAAGACGGGGTTGGTTGGTG
GGCCCGTCCTTCGACGGATAAGCTTCTGCTCATCGGAGGAGGCGAGGGAG
GAGAAGAAGGAGGGTATTTGGACGGTGACACCAAACGGAGCGGGCCCGTG
CGCGGACTCGTCGGGGAGGGCTCGGCCGATCAGAACGCGTGCAGTGGGCG
TAAATGGGGTTATTGGCGCCCTGACCACGGCGATAGTGATAAACGCGGTT
CGAACGGA
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Coding sequence (CDS) from alignment at H-elongata_contig63104:1638..2495-

>mRNA_H-elongata_contig63104.13887.1 ID=mRNA_H-elongata_contig63104.13887.1|Name=mRNA_H-elongata_contig63104.13887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig63104:1638..2495- (Himanthalia elongata Himel1 dioecious)
ATGCATCCACGCGCGGAGCCCCTCTTTCCGGCCGTTACTGCCGCCACGAT
CCAGAGACAGACGCCGCTACCGATGCATCCACGCGCGGAGCCCCTCTTTC
CGGCCGTTACTGCCGCCACGATCCAGAGACAGACGCCGCTACCGGCCAAG
GCTTCCGTAGTACTTGGTGATCGAGCAGACGAGGCGGTTAGTTTTGGGAC
GCTTGGGGCAGACGAGCCGCCGCCGCCGCCGCCGCCGTTGAGGTCACCTC
CACGAGGCGGCTCTTCGAACCTGAACCCCCCGCAGCGACGATTGCGGGGG
GCGTACAGTGGCGGCACTGGCAGGCAAGGGGTTGGGCCGCAGGGGATCGA
GGTTGGAGCGCAGGGACAGCAAGGAGGGGCCGTCAAGCGGAATGGGGTAC
ATCGTCTGAATTCGACAGCGCGGGTAGAGGGGAGCAGTGTGAGAGAGAGA
GGAGTCATAAGTGTTCAAGGGCGAGAGGATGCGGAACAGGGCGGCGGACA
GGTACGCGCCAGCAGCTGCAGTAACGGAAACAGCGGTAGAATATCATCAG
ACGAAGACGGGGTTGGTTGGTGGGCCCGTCCTTCGACGGATAAGCTTCTG
CTCATCGGAGGAGGCGAGGGAGGAGAAGAAGGAGGGTATTTGGACGGTGA
CACCAAACGGAGCGGGCCCGTGCGCGGACTCGTCGGGGAGGGCTCGGCCG
ATCAGAACGCGTGCAGTGGGCGTAAATGGGGTTATTGGCGCCCTGACCAC
GGCGATAGTGATAAACGCGGTTCGAACGGAGCCAAGGCTTCCGTAGTACT
TGGTGATCGAGCAGACGAGGCGGTTAGTTTTGGGACGCTTGGGGCAGACG
AGCCGCCGCCGCCGCCGCCGCCGTTGAGGTCACCTCCACGAGGCGGCTCT
TCGAACCTGAACCCCCCGCAGCGACGATTGCGGGGGGCGTACAGTGGCGG
CACTGGCAGGCAAGGGGTTGGGCCGCAGGGGATCGAGGTTGGAGCGCAGG
GACAGCAAGGAGGGGCCGTCAAGCGGAATGGGGTACATCGTCTGAATTCG
ACAGCGCGGGTAGAGGGGAGCAGTGTGAGAGAGAGAGGAGTCATAAGTGT
TCAAGGGCGAGAGGATGCGGAACAGGGCGGCGGACAGGTACGCGCCAGCA
GCTGCAGTAACGGAAACAGCGGTAGAATATCATCAGACGAAGACGGGGTT
GGTTGGTGGGCCCGTCCTTCGACGGATAAGCTTCTGCTCATCGGAGGAGG
CGAGGGAGGAGAAGAAGGAGGGTATTTGGACGGTGACACCAAACGGAGCG
GGCCCGTGCGCGGACTCGTCGGGGAGGGCTCGGCCGATCAGAACGCGTGC
AGTGGGCGTAAATGGGGTTATTGGCGCCCTGACCACGGCGATAGTGATAA
ACGCGGTTCGAACGGA
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