mRNA_H-elongata_contig6309.13884.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6309.13884.1
Unique NamemRNA_H-elongata_contig6309.13884.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6309.13884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6309contigH-elongata_contig6309:9174..10375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size758
Cds size687
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6309.13884.1prot_H-elongata_contig6309.13884.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6309 9244..10375 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.1396816-UTR-H-elongata_contig6309:9173..92431622931014.1396816-UTR-H-elongata_contig6309:9173..9243Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6309 9174..9243 -
1691679662.5497248-UTR-H-elongata_contig6309:9173..92431691679662.5497248-UTR-H-elongata_contig6309:9173..9243Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6309 9174..9243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.3103514-CDS-H-elongata_contig6309:9243..97441622931014.3103514-CDS-H-elongata_contig6309:9243..9744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6309 9244..9744 -
1691679662.560049-CDS-H-elongata_contig6309:9243..97441691679662.560049-CDS-H-elongata_contig6309:9243..9744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6309 9244..9744 -
1622931014.3780096-CDS-H-elongata_contig6309:10189..103751622931014.3780096-CDS-H-elongata_contig6309:10189..10375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6309 10190..10375 -
1691679662.5702753-CDS-H-elongata_contig6309:10189..103751691679662.5702753-CDS-H-elongata_contig6309:10189..10375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6309 10190..10375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6309.13884.1

>prot_H-elongata_contig6309.13884.1 ID=prot_H-elongata_contig6309.13884.1|Name=mRNA_H-elongata_contig6309.13884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
SVDQYTSYAKEPWGFSRPENLEEHCPLSKATFVEWPNTTCDFSVHRGVAP
PGKLSTLPTSSAISISTLERNNSTKRPHIEKEDRLEDGAVNLPNIIGDDG
IASKVYIRKVRNSADQVTAAFSLRSARKILDGESDSSVSKFRQARPELRK
KLGGQHSIHNWSASNIGFGDVKGEAFARRERENREGYLHAASNAQMTSKP
CVAEATNFRSRYPHTLGRIKAMSHSRPG*
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mRNA from alignment at H-elongata_contig6309:9174..10375-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6309.13884.1 ID=mRNA_H-elongata_contig6309.13884.1|Name=mRNA_H-elongata_contig6309.13884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1202bp|location=Sequence derived from alignment at H-elongata_contig6309:9174..10375- (Himanthalia elongata Himel1 dioecious)
AGCGTCGACCAGTACACAAGCTATGCGAAAGAACCATGGGGTTTCAGCAG
GCCGGAGAATCTCGAAGAGCACTGTCCGCTTTCCAAGGCAACGTTCGTCG
AGTGGCCGAACACGACATGCGATTTCTCGGTACACCGCGGAGTGGCGCCA
CCCGGCAAACTGTCCACCCTCCCAACTTCATCTGCGGTGAGCGTTCCGAG
GAAGTAGTGTTGTTGCGTAAATAGTCTAAAATTAGTCTTGTTGCGTAAAT
CATGTGCACCAGGGCATAAATAAATACGATGAAATTAACCCTTTCTTGTT
GTTGATCTCAGGGAAATCTATATCAAGCGCATGTTTTGATTGCTTAACGA
AGGAAGGATAGGTTATAAATAAATATAATGCCTGCCTCCAACGCATACCG
GAGGTCATATCTATATGCGGTACGCCAAGCTCGTGCTCACGCCTTCCTGG
GCTGCTCGAAGTTCTTATATGGCGTGCAAAGGATCCACATGTGGTCGTGT
TACGCATGGTGTGTGGGGATTTGTCCTTCGAAATATTTATTAGGGGACGG
ACTCATAGGAACGATGATAGAGACTGACGACGTGCGGGCTGCCTGTCAGA
ATTCCCCTGACGTCCGTGTGACCGGCCTCAGATATCTATCTCAACTCTCG
AACGGAATAATTCAACAAAAAGACCCCACATCGAAAAGGAGGATCGCTTG
GAGGACGGCGCCGTAAATCTTCCCAATATTATAGGTGATGATGGAATTGC
TTCAAAAGTTTATATTCGAAAGGTTAGAAATTCGGCAGATCAAGTGACTG
CGGCCTTCTCGCTGAGATCGGCACGCAAGATATTGGATGGGGAATCGGAT
AGCAGTGTATCAAAGTTTCGACAAGCGCGCCCGGAGCTTCGAAAGAAACT
CGGGGGTCAACACAGCATACACAACTGGAGCGCGAGCAACATTGGCTTCG
GCGATGTGAAAGGAGAAGCGTTTGCTCGTAGAGAGAGGGAAAATCGCGAG
GGATACTTGCACGCGGCATCCAATGCCCAGATGACGAGCAAGCCCTGCGT
GGCAGAGGCAACCAATTTCCGTTCTCGTTACCCGCACACGCTGGGGAGGA
TCAAAGCGATGTCGCACTCTCGCCCAGGTTGAGCCGGCTTGCTACCAGTA
ACGATCCGTCGTTGACCATTGCTACTTTGATTTGATGAATGCTATGAGTA
CC
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Coding sequence (CDS) from alignment at H-elongata_contig6309:9174..10375-

>mRNA_H-elongata_contig6309.13884.1 ID=mRNA_H-elongata_contig6309.13884.1|Name=mRNA_H-elongata_contig6309.13884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig6309:9174..10375- (Himanthalia elongata Himel1 dioecious)
AGCGTCGACCAGTACACAAGCTATGCGAAAGAACCATGGGGTTTCAGCAG
GCCGGAGAATCTCGAAGAGCACTGTCCGCTTTCCAAGGCAACGTTCGTCG
AGTGGCCGAACACGACATGCGATTTCTCGGTACACCGCGGAGTGGCGCCA
CCCGGCAAACTGTCCACCCTCCCAACTTCATCTGCGAGCGTCGACCAGTA
CACAAGCTATGCGAAAGAACCATGGGGTTTCAGCAGGCCGGAGAATCTCG
AAGAGCACTGTCCGCTTTCCAAGGCAACGTTCGTCGAGTGGCCGAACACG
ACATGCGATTTCTCGGTACACCGCGGAGTGGCGCCACCCGGCAAACTGTC
CACCCTCCCAACTTCATCTGCGATATCTATCTCAACTCTCGAACGGAATA
ATTCAACAAAAAGACCCCACATCGAAAAGGAGGATCGCTTGGAGGACGGC
GCCGTAAATCTTCCCAATATTATAGGTGATGATGGAATTGCTTCAAAAGT
TTATATTCGAAAGGTTAGAAATTCGGCAGATCAAGTGACTGCGGCCTTCT
CGCTGAGATCGGCACGCAAGATATTGGATGGGGAATCGGATAGCAGTGTA
TCAAAGTTTCGACAAGCGCGCCCGGAGCTTCGAAAGAAACTCGGGGGTCA
ACACAGCATACACAACTGGAGCGCGAGCAACATTGGCTTCGGCGATGTGA
AAGGAGAAGCGTTTGCTCGTAGAGAGAGGGAAAATCGCGAGGGATACTTG
CACGCGGCATCCAATGCCCAGATGACGAGCAAGCCCTGCGTGGCAGAGGC
AACCAATTTCCGTTCTCGTTACCCGCACACGCTGGGGAGGATCAAAGCGA
TGTCGCACTCTCGCCCAGGTTGAATATCTATCTCAACTCTCGAACGGAAT
AATTCAACAAAAAGACCCCACATCGAAAAGGAGGATCGCTTGGAGGACGG
CGCCGTAAATCTTCCCAATATTATAGGTGATGATGGAATTGCTTCAAAAG
TTTATATTCGAAAGGTTAGAAATTCGGCAGATCAAGTGACTGCGGCCTTC
TCGCTGAGATCGGCACGCAAGATATTGGATGGGGAATCGGATAGCAGTGT
ATCAAAGTTTCGACAAGCGCGCCCGGAGCTTCGAAAGAAACTCGGGGGTC
AACACAGCATACACAACTGGAGCGCGAGCAACATTGGCTTCGGCGATGTG
AAAGGAGAAGCGTTTGCTCGTAGAGAGAGGGAAAATCGCGAGGGATACTT
GCACGCGGCATCCAATGCCCAGATGACGAGCAAGCCCTGCGTGGCAGAGG
CAACCAATTTCCGTTCTCGTTACCCGCACACGCTGGGGAGGATCAAAGCG
ATGTCGCACTCTCGCCCAGGTTGA
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