mRNA_H-elongata_contig6297.13875.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6297.13875.1
Unique NamemRNA_H-elongata_contig6297.13875.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Match: A0A6H5J869_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J869_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.040e-16
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:    2 FPMKEALRQAAGVASALAYMHDEAIPGVKVVHRDIKSNNLAFTAD-GTLKLF 154
            FPM EALRQAAGVASALAY+HDEA+PG KV+HRDIK NNLAFT D  TLKLF
Sbjct:  158 FPMDEALRQAAGVASALAYLHDEAVPGAKVLHRDIKPNNLAFTGDFRTLKLF 209
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BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Match: A0A835YS35_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS35_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.110e-12
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:    8 MKEALRQAAGVASALAYMHDEAIPGVKVVHRDIKSNNLAFTADGTLKLF 154
            +++ALR A G+ASA++YMH  A+PG  ++HRD+KS+NLAF ADGTLKLF
Sbjct:  151 LEDALRHAQGIASAISYMHTRAMPGAAIMHRDLKSSNLAFAADGTLKLF 199
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BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Match: A0A7S2BEN3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BEN3_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 1.020e-7
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 2 
Query:    2 FPMKEALRQAAGVASALAYMHDEAIPGVKVVHRDIKSNNLAFTADGTLKLF 154
            +P+  A+  A  +A AL Y HDEA PG +++HRD+K NN+ F A+G L LF
Sbjct:   66 WPLSRAINIAVQLARALHYCHDEAFPGYRILHRDVKPNNIGFLANGNLVLF 116
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BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Match: A0A4D9DAK6_9STRA (Protein kinase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAK6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.300e-7
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:    2 FPMKEALRQAAGVASALAYMHDEAIPGVKVVHRDIKSNNLAFTADGTLKL 151
            F  +  L+ A  +A AL YMHDEA+PG  V+HRD+K +N+ F ADGTLK+
Sbjct:  303 FSYESLLKYALQMAEALKYMHDEALPGYAVMHRDLKPDNVGFKADGTLKI 352
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BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Match: A0A7S2JGW1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JGW1_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 5.610e-7
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 2 
Query:    2 FPMKEALRQAAGVASALAYMHDEAIPGVKVVHRDIKSNNLAFTADGTLKLF 154
            +P+  +L  A  +A AL Y HD+A PG +V+HRD+K NN+ F A+G L LF
Sbjct:   17 WPLSRSLNCAVQLARALQYCHDDAFPGYRVLHRDVKPNNIGFLANGDLVLF 67
[Close]
BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Match: A0A6H5JZF2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZF2_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.590e-7
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 2 
Query:    2 FPMKEALRQAAGVASALAYMHDEAIPGVKVVHRDIKSNNLAFTADGTLKL 151
            F  +E LRQ   +A AL YMH+EA+PG  VVHRD+K +N+ F + G LKL
Sbjct:  389 FTYEELLRQGLQLAEALQYMHNEAMPGKLVVHRDLKPDNIGFDSQGNLKL 438
[Close]
BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Match: A0A7S2JFR2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JFR2_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 9.370e-7
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 2 
Query:    2 FPMKEALRQAAGVASALAYMHDEAIPGVKVVHRDIKSNNLAFTADGTLKLF 154
            +P+  +L  A  +A AL Y HD+A PG +V+HRD+K NN+ F A+G L LF
Sbjct:   17 WPLSRSLNCAVQLARALQYCHDDAFPGYRVLHRDVKPNNIGFLANGDLVLF 67
[Close]
BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Match: A0A7S3DWF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DWF4_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.200e-6
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 2 
Query:    2 FPMKEALRQAAGVASALAYMHDEAIPGVKVVHRDIKSNNLAFTADGTLKL 151
            F   + LR A  +A A+ Y+H+ AI G  V+HRD+K +N+ FT DGT+K+
Sbjct:   16 FSFVDVLRIARSIAEAMTYLHESAIMGSIVLHRDLKPDNIGFTLDGTIKV 65
[Close]
BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Match: F0YCI6_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCI6_AURAN)

HSP 1 Score: 50.8 bits (120), Expect = 2.460e-5
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:   23 RQAAGVASALAYMHDEAIPGVKVVHRDIKSNNLAFTADGTLKLF 154
            R AA +A ALAY+H  A+PG +VVHRD+K +N+  T+   LKLF
Sbjct:    4 RLAAELADALAYLHHRALPGYRVVHRDLKPDNMGVTSRRQLKLF 47
[Close]
BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Match: A0A835Z8J1_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.560e-5
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 2 
Query:    2 FPMKEALRQAAGVASALAYMHDEAIPGVKVVHRDIKSNNLAFTADGTLKL 151
            F   E L+    +A  L Y+HDEAIPG  V+HRDIK +N+ FT DG  KL
Sbjct:  344 FNYLELLKCGRQIADGLRYLHDEAIPGRIVLHRDIKPDNIGFTKDGDAKL 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6297.13875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5J869_9PHAE1.040e-1682.69Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835YS35_9STRA6.110e-1263.27Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]
A0A7S2BEN3_9EUKA1.020e-749.02Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A4D9DAK6_9STRA1.300e-754.00Protein kinase domain-containing protein n=2 Tax=M... [more]
A0A7S2JGW1_9EUKA5.610e-749.02Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A6H5JZF2_9PHAE8.590e-754.00Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S2JFR2_9EUKA9.370e-749.02Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S3DWF4_9STRA4.200e-646.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
F0YCI6_AURAN2.460e-554.55Protein kinase domain-containing protein (Fragment... [more]
A0A835Z8J1_9STRA2.560e-552.00Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6297contigH-elongata_contig6297:7010..7718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionSerine/threonine-protein kinase CTR1
Ec32 orthologEc-06_004650.2
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.174947-CDS-H-elongata_contig6297:7009..73111622931013.174947-CDS-H-elongata_contig6297:7009..7311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 7010..7311 -
1691679662.144597-CDS-H-elongata_contig6297:7009..73111691679662.144597-CDS-H-elongata_contig6297:7009..7311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 7010..7311 -
1622931013.1981635-CDS-H-elongata_contig6297:7639..77181622931013.1981635-CDS-H-elongata_contig6297:7639..7718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 7640..7718 -
1691679662.1539702-CDS-H-elongata_contig6297:7639..77181691679662.1539702-CDS-H-elongata_contig6297:7639..7718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 7640..7718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6297.13875.1prot_H-elongata_contig6297.13875.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6297 7010..7718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6297.13875.1

>prot_H-elongata_contig6297.13875.1 ID=prot_H-elongata_contig6297.13875.1|Name=mRNA_H-elongata_contig6297.13875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
VSDERGVATGCGGSLRARVHARRGHTRSEGRAPRHQEQQPGVHGGRHAQA
IRQESARGLYLKLLAIIRPAAPPSGVFIQLSLTYSPRHPPLGIPASPPPN
YYYYEKTPSLILTMRADPDLNYLFCT*
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mRNA from alignment at H-elongata_contig6297:7010..7718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6297.13875.1 ID=mRNA_H-elongata_contig6297.13875.1|Name=mRNA_H-elongata_contig6297.13875.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=709bp|location=Sequence derived from alignment at H-elongata_contig6297:7010..7718- (Himanthalia elongata Himel1 dioecious)
GTTTCCGATGAAAGAGGCGTTGCGACAGGCTGCGGGGGTAGCCTCCGCGC
TCGCGTACATGCACGACGAGGCCATACCCGTGAGTACCTCTATAACAAAT
ATTACTTTTCAGAACGAAACAGCGGCATTATTTTCTGGTTACATCCCAGA
CGAGAGGGGCGCTGCAAACGTCGTCCGGCAGCCTTCGCTCAACATCCTGG
TAATTGAGTCTGCTGCACGCGACGAAAGCGAAAGCACCAGCGAAAGGGAG
CGACGGCCATCATAGCTCAAAGTCCGTACAACCTGCACGTCTCATTGTCA
GCGAGAGGATGTATTCTGCTACATTTAAGGCGGATGGGACGGCCCGCAAG
CGATAAAGTGGGAACCCATCCCCGCCTCCACCGCGCGTGACACTCGTCGA
AACCCAGGGAGTGAAGGTCGTGCACCGCGACATCAAGAGCAACAACCTGG
CGTTCACGGCGGACGGCACGCTCAAGCTATTCGGCAAGAAAGCGCGCGAG
GGCTATACTTAAAGCTACTCGCAATTATCCGCCCTGCGGCACCTCCTTCT
GGTGTTTTTATTCAGCTCTCGCTTACTTACAGCCCTCGGCATCCCCCCCT
CGGCATCCCCGCATCCCCCCCCCCCAATTATTATTATTATGAAAAAACTC
CCAGCCTTATTTTGACCATGCGTGCAGACCCCGACCTTAATTATTTATTT
TGTACATAG
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Coding sequence (CDS) from alignment at H-elongata_contig6297:7010..7718-

>mRNA_H-elongata_contig6297.13875.1 ID=mRNA_H-elongata_contig6297.13875.1|Name=mRNA_H-elongata_contig6297.13875.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig6297:7010..7718- (Himanthalia elongata Himel1 dioecious)
GTTTCCGATGAAAGAGGCGTTGCGACAGGCTGCGGGGGTAGCCTCCGCGC
TCGCGTACATGCACGACGAGGCCATACCCGTTTCCGATGAAAGAGGCGTT
GCGACAGGCTGCGGGGGTAGCCTCCGCGCTCGCGTACATGCACGACGAGG
CCATACCCGGAGTGAAGGTCGTGCACCGCGACATCAAGAGCAACAACCTG
GCGTTCACGGCGGACGGCACGCTCAAGCTATTCGGCAAGAAAGCGCGCGA
GGGCTATACTTAAAGCTACTCGCAATTATCCGCCCTGCGGCACCTCCTTC
TGGTGTTTTTATTCAGCTCTCGCTTACTTACAGCCCTCGGCATCCCCCCC
TCGGCATCCCCGCATCCCCCCCCCCCAATTATTATTATTATGAAAAAACT
CCCAGCCTTATTTTGACCATGCGTGCAGACCCCGACCTTAATTATTTATT
TTGTACATAGGGAGTGAAGGTCGTGCACCGCGACATCAAGAGCAACAACC
TGGCGTTCACGGCGGACGGCACGCTCAAGCTATTCGGCAAGAAAGCGCGC
GAGGGCTATACTTAAAGCTACTCGCAATTATCCGCCCTGCGGCACCTCCT
TCTGGTGTTTTTATTCAGCTCTCGCTTACTTACAGCCCTCGGCATCCCCC
CCTCGGCATCCCCGCATCCCCCCCCCCCAATTATTATTATTATGAAAAAA
CTCCCAGCCTTATTTTGACCATGCGTGCAGACCCCGACCTTAATTATTTA
TTTTGTACATAG
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