mRNA_H-elongata_contig62893.13869.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62893.13869.1
Unique NamemRNA_H-elongata_contig62893.13869.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62893.13869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62893contigH-elongata_contig62893:2214..2456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue5.1e-08
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categorysignal peptide
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.774326-CDS-H-elongata_contig62893:2213..24561622931012.774326-CDS-H-elongata_contig62893:2213..2456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62893 2214..2456 +
1691679662.0113838-CDS-H-elongata_contig62893:2213..24561691679662.0113838-CDS-H-elongata_contig62893:2213..2456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62893 2214..2456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62893.13869.1prot_H-elongata_contig62893.13869.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62893 2214..2456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62893.13869.1

>prot_H-elongata_contig62893.13869.1 ID=prot_H-elongata_contig62893.13869.1|Name=mRNA_H-elongata_contig62893.13869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
LLSTRPTSLLLRALCVASDVDAAEGNVEAVKEKLEVVLEATDGSFADALS
RLGWLLLLGGVNGSGNADAARPYLERVATQD
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mRNA from alignment at H-elongata_contig62893:2214..2456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62893.13869.1 ID=mRNA_H-elongata_contig62893.13869.1|Name=mRNA_H-elongata_contig62893.13869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig62893:2214..2456+ (Himanthalia elongata Himel1 dioecious)
CTTTTATCGACCCGACCGACATCGCTGCTCTTGAGGGCGCTCTGCGTGGC
ATCGGATGTCGACGCGGCCGAAGGAAACGTGGAAGCGGTCAAGGAGAAAC
TAGAAGTGGTTCTGGAGGCCACGGACGGTAGCTTTGCCGACGCCCTGAGC
AGGCTAGGCTGGCTGCTGCTCCTAGGGGGGGTGAACGGTAGCGGGAATGC
CGACGCGGCGAGGCCCTATCTGGAGAGGGTCGCCACTCAAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig62893:2214..2456+

>mRNA_H-elongata_contig62893.13869.1 ID=mRNA_H-elongata_contig62893.13869.1|Name=mRNA_H-elongata_contig62893.13869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig62893:2214..2456+ (Himanthalia elongata Himel1 dioecious)
CTTTTATCGACCCGACCGACATCGCTGCTCTTGAGGGCGCTCTGCGTGGC
ATCGGATGTCGACGCGGCCGAAGGAAACGTGGAAGCGGTCAAGGAGAAAC
TAGAAGTGGTTCTGGAGGCCACGGACGGTAGCTTTGCCGACGCCCTGAGC
AGGCTAGGCTGGCTGCTGCTCCTAGGGGGGGTGAACGGTAGCGGGAATGC
CGACGCGGCGAGGCCCTATCTGGAGAGGGTCGCCACTCAAGATCTTTTAT
CGACCCGACCGACATCGCTGCTCTTGAGGGCGCTCTGCGTGGCATCGGAT
GTCGACGCGGCCGAAGGAAACGTGGAAGCGGTCAAGGAGAAACTAGAAGT
GGTTCTGGAGGCCACGGACGGTAGCTTTGCCGACGCCCTGAGCAGGCTAG
GCTGGCTGCTGCTCCTAGGGGGGGTGAACGGTAGCGGGAATGCCGACGCG
GCGAGGCCCTATCTGGAGAGGGTCGCCACTCAAGAT
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