mRNA_H-elongata_contig62893.13867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62893.13867.1
Unique NamemRNA_H-elongata_contig62893.13867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62893.13867.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 4.420e-37
Identity = 81/131 (61.83%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:    1 LQDDQTLYAVLVSAGMAGLACNDLPAAQRSFRRATESLPYSPQAWKGLIDCLERAG--RVEDLPECLAHAAGIAESKGNHGRALTLLLRQAEVLGDLGRPEEALNALQRHMENPEAVAAVAG---GADTAA 378
            L D QTLYAVLV++G+A LA  DL AA+ SFRRA +S+P +PQAWKGLIDCLER+G  +V  LPECL+ AA IAE KGN  RA  L LR   VL  LGR EEAL A+ RH+++PEA+AA AG   G  TAA
Sbjct:   37 LNDAQTLYAVLVTSGLAALASQDLTAAESSFRRAADSIPDAPQAWKGLIDCLERSGAEKVGALPECLSRAAEIAEGKGNLARARGLRLRLGTVLDHLGRKEEALEAVLRHLDSPEAMAAAAGDGSGISTAA 167
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BLAST of mRNA_H-elongata_contig62893.13867.1 vs. uniprot
Match: A0A6H5JAD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD5_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.360e-34
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 1 
Query:    1 LQDDQTLYAVLVSAGMAGLACNDLPAAQRSFRRATESLPYSPQ------------AWKGLIDCLERAG--RVEDLPECLAHAAGIAESKGNHGRALTLLLRQAEVLGDLGRPEEALNALQRHMENPEAVAAVAG---GADTAA 378
            L+D QTLYAVLV++G+A LA  DL AA+ SFRRA +S+P +PQ            AWKGLIDCLER+G  +V  LPECL+ AA IAE KGN  RA  L LR   VL  LGR EEAL A+ RH+++P+A+AA AG   G  TAA
Sbjct:   37 LKDAQTLYAVLVTSGLAALASQDLTAAESSFRRAADSIPDAPQPSYIFIPNPTPKAWKGLIDCLERSGAEKVAALPECLSRAAEIAEGKGNFARARGLRLRLGTVLDHLGRKEEALEAVLRHVDSPQAMAATAGDGSGVPTAA 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62893.13867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G059_ECTSI4.420e-3761.83Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A6H5JAD5_9PHAE5.360e-3455.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62893contigH-elongata_contig62893:711..1088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue1e-31
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.6378963-CDS-H-elongata_contig62893:710..10881622931012.6378963-CDS-H-elongata_contig62893:710..1088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62893 711..1088 +
1691679661.9701269-CDS-H-elongata_contig62893:710..10881691679661.9701269-CDS-H-elongata_contig62893:710..1088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62893 711..1088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62893.13867.1prot_H-elongata_contig62893.13867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62893 711..1088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62893.13867.1

>prot_H-elongata_contig62893.13867.1 ID=prot_H-elongata_contig62893.13867.1|Name=mRNA_H-elongata_contig62893.13867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
LQDDQTLYAVLVSAGMAGLACNDLPAAQRSFRRATESLPYSPQAWKGLID
CLERAGRVEDLPECLAHAAGIAESKGNHGRALTLLLRQAEVLGDLGRPEE
ALNALQRHMENPEAVAAVAGGADTAA
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mRNA from alignment at H-elongata_contig62893:711..1088+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62893.13867.1 ID=mRNA_H-elongata_contig62893.13867.1|Name=mRNA_H-elongata_contig62893.13867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at H-elongata_contig62893:711..1088+ (Himanthalia elongata Himel1 dioecious)
CTACAGGACGATCAGACCTTGTACGCCGTCCTGGTTAGCGCGGGTATGGC
AGGGCTGGCCTGCAACGATCTCCCCGCTGCACAGCGAAGCTTCCGGCGGG
CCACAGAATCTTTGCCCTACTCCCCCCAGGCATGGAAGGGACTGATAGAC
TGCCTCGAGCGCGCGGGGAGAGTCGAAGACCTTCCGGAGTGTCTAGCTCA
CGCGGCCGGTATCGCCGAGAGTAAGGGCAACCACGGTAGGGCGCTGACGC
TGCTCCTGCGGCAGGCCGAGGTGCTGGGCGATCTCGGGCGACCGGAGGAA
GCCCTCAACGCGCTCCAGCGACACATGGAAAATCCTGAAGCTGTCGCGGC
CGTGGCCGGGGGCGCAGACACGGCGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig62893:711..1088+

>mRNA_H-elongata_contig62893.13867.1 ID=mRNA_H-elongata_contig62893.13867.1|Name=mRNA_H-elongata_contig62893.13867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig62893:711..1088+ (Himanthalia elongata Himel1 dioecious)
CTACAGGACGATCAGACCTTGTACGCCGTCCTGGTTAGCGCGGGTATGGC
AGGGCTGGCCTGCAACGATCTCCCCGCTGCACAGCGAAGCTTCCGGCGGG
CCACAGAATCTTTGCCCTACTCCCCCCAGGCATGGAAGGGACTGATAGAC
TGCCTCGAGCGCGCGGGGAGAGTCGAAGACCTTCCGGAGTGTCTAGCTCA
CGCGGCCGGTATCGCCGAGAGTAAGGGCAACCACGGTAGGGCGCTGACGC
TGCTCCTGCGGCAGGCCGAGGTGCTGGGCGATCTCGGGCGACCGGAGGAA
GCCCTCAACGCGCTCCAGCGACACATGGAAAATCCTGAAGCTGTCGCGGC
CGTGGCCGGGGGCGCAGACACGGCGGCTCTACAGGACGATCAGACCTTGT
ACGCCGTCCTGGTTAGCGCGGGTATGGCAGGGCTGGCCTGCAACGATCTC
CCCGCTGCACAGCGAAGCTTCCGGCGGGCCACAGAATCTTTGCCCTACTC
CCCCCAGGCATGGAAGGGACTGATAGACTGCCTCGAGCGCGCGGGGAGAG
TCGAAGACCTTCCGGAGTGTCTAGCTCACGCGGCCGGTATCGCCGAGAGT
AAGGGCAACCACGGTAGGGCGCTGACGCTGCTCCTGCGGCAGGCCGAGGT
GCTGGGCGATCTCGGGCGACCGGAGGAAGCCCTCAACGCGCTCCAGCGAC
ACATGGAAAATCCTGAAGCTGTCGCGGCCGTGGCCGGGGGCGCAGACACG
GCGGCT
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