mRNA_H-elongata_contig62728.13852.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62728.13852.1
Unique NamemRNA_H-elongata_contig62728.13852.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: A0A6H5LQ32_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ32_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 9.120e-21
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   91 LQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAREVRG 282
            +++LYE  QLCD+ L VEGEEFRAHKAVLACS+SFLG +MMS MRE  Q+VIEL DIS+R+V G
Sbjct:  248 IRELYEKEQLCDITLSVEGEEFRAHKAVLACSKSFLGTLMMSNMRESTQDVIELEDISSRQVEG 311          
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: D8LR89_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR89_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.480e-19
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 1
Query:   91 LQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISARE 273
            +++LYE  QLCD+ L VEGEEFRAHKAVLACS+SFLG +MMS MRE  Q+VIEL DIS+R+
Sbjct:  122 IRELYEKEQLCDITLSVEGEEFRAHKAVLACSKSFLGTLMMSNMRESTQDVIELEDISSRQ 182          
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: A0A835YJQ3_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJQ3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.960e-10
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   91 LQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRD 258
            + +LY+ + LCDV+L+V G EFRAHK+VL   RSFLG++M + MRE  Q  IEL D
Sbjct:   82 IAELYDKQVLCDVVLKVRGVEFRAHKSVLMGYRSFLGSLMSTDMREGRQSCIELGD 137          
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: UPI0018961403 (solute carrier family 22 member 7-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018961403)

HSP 1 Score: 62.8 bits (151), Expect = 2.840e-9
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   82 LPPLQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISA 267
            L  L +L ES  LCDV LRV+GEEF  H+ VLA S  +  AM  SG+ E D+  +E+R +SA
Sbjct:   97 LSSLSELRESGMLCDVTLRVDGEEFALHRVVLAASCPYFAAMFHSGLAEADRGTVEIRGVSA 158          
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: A0A1S3MNX9_SALSA (kelch-like protein 26 isoform X1 n=45 Tax=Protacanthopterygii TaxID=41705 RepID=A0A1S3MNX9_SALSA)

HSP 1 Score: 60.5 bits (145), Expect = 1.790e-8
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   10 PNNKMADQSTNGRPTRVSRNPSCSLPPLQDLYESR---QLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAR 270
            P N MA+Q++   P   S  PS S   LQ L   R   QL DV+L +  E F+ HKAVLA    +  AM   GMRE +Q+ IEL+D+SAR
Sbjct:   14 PQNSMANQNST-LPCTFSA-PSHSATLLQGLSVLRAQGQLLDVVLAINEERFQVHKAVLASCSDYFRAMFTGGMRESNQDTIELKDLSAR 101          
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: L1J5U3_GUITC (BTB domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5U3_GUITC)

HSP 1 Score: 60.5 bits (145), Expect = 1.800e-8
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   82 LPPLQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAREVRG-KGVLYEGRL 309
            L  L  L++   LCDV +RVE E+FRAH+ +LA S  F   +++ G RE  +EVI+L  +  R  +     +Y G+L
Sbjct:   86 LQGLSQLFQDESLCDVTIRVEDEDFRAHRVILASSSDFFKILLVGGFRESKEEVIKLEGVDKRSFKWILDFIYNGQL 162          
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: A0A7S1DT92_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DT92_HEMAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.800e-8
Identity = 29/86 (33.72%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   55 RVSRNPSCSLPPLQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAREVRG-KGVLYEGRL 309
            +  ++P+  L  L +L    QLCDV+LRV+G +F+AH+ V+A S   L A+++ G +E D++++ L  + A   R     +Y G++
Sbjct:   45 KCDKHPAALLCGLGELLSDGQLCDVVLRVDGVDFQAHRVVVAASSEMLRALLVGGWKESDEKIVRLDGVDAHSFRTILNFIYSGQV 130          
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: H2T7Z0_TAKRU (BTB domain-containing protein n=12 Tax=Percomorphaceae TaxID=1489872 RepID=H2T7Z0_TAKRU)

HSP 1 Score: 58.5 bits (140), Expect = 8.480e-8
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 ADPPNNKMADQSTNGRPTRVSRNPSCSLPPLQDLYESR---QLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAR 270
            +D P N MA++++  R T  +  PS S   LQ L   R   QL DV+L +  E F+ H+AVLA    +  AM   GMRE  Q+ IEL+ +SAR
Sbjct:   11 SDQPRNSMANKNSTLRCTFSA--PSHSATLLQGLSVLRAQGQLLDVVLAINEERFQVHRAVLAACSDYFRAMFTGGMRESQQDTIELKGLSAR 101          
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: A0A6J8AC37_MYTCO (KLHL12 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8AC37_MYTCO)

HSP 1 Score: 57.8 bits (138), Expect = 1.570e-7
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   82 LPPLQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISA 267
            L  + +L +  +LCDV+L+V+GEEF AH+ VLA    +  AM  + M E+D+ VI L +ISA
Sbjct:   24 LTTMNNLRKVNKLCDVVLQVDGEEFPAHRVVLAACSDYFCAMFTNEMSEKDKSVITLHEISA 85          
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: UPI001471674F (kelch-like protein 26 isoform X1 n=2 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001471674F)

HSP 1 Score: 57.4 bits (137), Expect = 2.160e-7
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 1
Query:   82 LPPLQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAR 270
            L  L  L    QL DV+L + GE F  HKAVLA    +  AM   GMRE +Q+ IEL+ +SAR
Sbjct:   47 LQGLSGLRAKGQLLDVVLTINGERFLVHKAVLAACSDYFRAMFTGGMRESNQDTIELKGLSAR 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LQ32_9PHAE9.120e-2170.31BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LR89_ECTSI1.480e-1970.49BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YJQ3_9STRA7.960e-1055.36WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
UPI00189614032.840e-950.00solute carrier family 22 member 7-like n=1 Tax=Rhi... [more]
A0A1S3MNX9_SALSA1.790e-845.56kelch-like protein 26 isoform X1 n=45 Tax=Protacan... [more]
L1J5U3_GUITC1.800e-838.96BTB domain-containing protein n=1 Tax=Guillardia t... [more]
A0A7S1DT92_HEMAN1.800e-833.72Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
H2T7Z0_TAKRU8.480e-841.94BTB domain-containing protein n=12 Tax=Percomorpha... [more]
A0A6J8AC37_MYTCO1.570e-745.16KLHL12 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8AC37... [more]
UPI001471674F2.160e-747.62kelch-like protein 26 isoform X1 n=2 Tax=Thalassop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62728contigH-elongata_contig62728:2959..3267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue9.2e-17
Seed eggNOG ortholog2880.D8LR89
KEGG koko:K03361,ko:K10260,ko:K10454,ko:K22071
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00387,M00407
GOsGO:0000003,GO:0000151,GO:0000166,GO:0000278,GO:0000281,GO:0000746,GO:0000747,GO:0000910,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005856,GO:0005938,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007049,GO:0007346,GO:0008092,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0015629,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016905,GO:0017022,GO:0017076,GO:0018107,GO:0018193,GO:0018210,GO:0019005,GO:0019538,GO:0019941,GO:0019953,GO:0022402,GO:0022411,GO:0022414,GO:0030029,GO:0030036,GO:0030163,GO:0030554,GO:0030674,GO:0030863,GO:0030864,GO:0031033,GO:0031035,GO:0031037,GO:0031038,GO:0031145,GO:0031461,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0035639,GO:0036094,GO:0036211,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044703,GO:0044764,GO:0045159,GO:0046777,GO:0050789,GO:0050794,GO:0051301,GO:0051603,GO:0051704,GO:0051726,GO:0060090,GO:0061640,GO:0065007,GO:0070938,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0099568,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903047,GO:1990234
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759,KOG4441@1,KOG4441@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size288
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931010.9966736-UTR-H-elongata_contig62728:2958..29791622931010.9966736-UTR-H-elongata_contig62728:2958..2979Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62728 2959..2979 +
1691679661.3805506-UTR-H-elongata_contig62728:2958..29791691679661.3805506-UTR-H-elongata_contig62728:2958..2979Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62728 2959..2979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.0270004-CDS-H-elongata_contig62728:2979..32671622931011.0270004-CDS-H-elongata_contig62728:2979..3267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62728 2980..3267 +
1691679661.3967173-CDS-H-elongata_contig62728:2979..32671691679661.3967173-CDS-H-elongata_contig62728:2979..3267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62728 2980..3267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62728.13852.1prot_H-elongata_contig62728.13852.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62728 2980..3267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62728.13852.1

>prot_H-elongata_contig62728.13852.1 ID=prot_H-elongata_contig62728.13852.1|Name=mRNA_H-elongata_contig62728.13852.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MADQSTNGRPTRVSRNPSCSLPPLQDLYESRQLCDVILRVEGEEFRAHKA
VLACSRSFLGAMMMSGMRERDQEVIELRDISAREVRGKGVLYEGRL
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mRNA from alignment at H-elongata_contig62728:2959..3267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62728.13852.1 ID=mRNA_H-elongata_contig62728.13852.1|Name=mRNA_H-elongata_contig62728.13852.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig62728:2959..3267+ (Himanthalia elongata Himel1 dioecious)
GCCGATCCACCGAATAACAAAATGGCCGACCAATCGACCAATGGACGACC AACACGCGTGAGTCGGAATCCATCTTGCTCCCTCCCCCCTCTCCAGGACC TGTACGAGTCGAGGCAGCTTTGCGACGTGATCCTTAGAGTAGAGGGGGAA GAATTCAGGGCCCACAAGGCGGTACTGGCTTGCAGCCGCAGCTTCCTGGG AGCCATGATGATGAGCGGAATGAGGGAGAGAGATCAGGAAGTGATCGAGC TGAGGGACATCAGCGCCAGAGAGGTGAGAGGAAAGGGGGTGCTGTACGAA GGGAGGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig62728:2959..3267+

>mRNA_H-elongata_contig62728.13852.1 ID=mRNA_H-elongata_contig62728.13852.1|Name=mRNA_H-elongata_contig62728.13852.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig62728:2959..3267+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGACCAATCGACCAATGGACGACCAACACGCGTGAGTCGGAATCC
ATCTTGCTCCCTCCCCCCTCTCCAGGACCTGTACGAGTCGAGGCAGCTTT
GCGACGTGATCCTTAGAGTAGAGGGGGAAGAATTCAGGGCCCACAAGGCG
GTACTGGCTTGCAGCCGCAGCTTCCTGGGAGCCATGATGATGAGCGGAAT
GAGGGAGAGAGATCAGGAAGTGATCGAGCTGAGGGACATCAGCGCCAGAG
AGGTGAGAGGAAAGGGGGTGCTGTACGAAGGGAGGTTAATGGCCGACCAA
TCGACCAATGGACGACCAACACGCGTGAGTCGGAATCCATCTTGCTCCCT
CCCCCCTCTCCAGGACCTGTACGAGTCGAGGCAGCTTTGCGACGTGATCC
TTAGAGTAGAGGGGGAAGAATTCAGGGCCCACAAGGCGGTACTGGCTTGC
AGCCGCAGCTTCCTGGGAGCCATGATGATGAGCGGAATGAGGGAGAGAGA
TCAGGAAGTGATCGAGCTGAGGGACATCAGCGCCAGAGAGGTGAGAGGAA
AGGGGGTGCTGTACGAAGGGAGGTTA
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