mRNA_H-elongata_contig62728.13852.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: A0A6H5LQ32_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ32_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 9.120e-21 Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1
Query: 91 LQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAREVRG 282
+++LYE QLCD+ L VEGEEFRAHKAVLACS+SFLG +MMS MRE Q+VIEL DIS+R+V G
Sbjct: 248 IRELYEKEQLCDITLSVEGEEFRAHKAVLACSKSFLGTLMMSNMRESTQDVIELEDISSRQVEG 311
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: D8LR89_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR89_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 1.480e-19 Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 1
Query: 91 LQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISARE 273
+++LYE QLCD+ L VEGEEFRAHKAVLACS+SFLG +MMS MRE Q+VIEL DIS+R+
Sbjct: 122 IRELYEKEQLCDITLSVEGEEFRAHKAVLACSKSFLGTLMMSNMRESTQDVIELEDISSRQ 182
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: A0A835YJQ3_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJQ3_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 7.960e-10 Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 91 LQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRD 258
+ +LY+ + LCDV+L+V G EFRAHK+VL RSFLG++M + MRE Q IEL D
Sbjct: 82 IAELYDKQVLCDVVLKVRGVEFRAHKSVLMGYRSFLGSLMSTDMREGRQSCIELGD 137
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: UPI0018961403 (solute carrier family 22 member 7-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018961403) HSP 1 Score: 62.8 bits (151), Expect = 2.840e-9 Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 82 LPPLQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISA 267
L L +L ES LCDV LRV+GEEF H+ VLA S + AM SG+ E D+ +E+R +SA
Sbjct: 97 LSSLSELRESGMLCDVTLRVDGEEFALHRVVLAASCPYFAAMFHSGLAEADRGTVEIRGVSA 158
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: A0A1S3MNX9_SALSA (kelch-like protein 26 isoform X1 n=45 Tax=Protacanthopterygii TaxID=41705 RepID=A0A1S3MNX9_SALSA) HSP 1 Score: 60.5 bits (145), Expect = 1.790e-8 Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 10 PNNKMADQSTNGRPTRVSRNPSCSLPPLQDLYESR---QLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAR 270
P N MA+Q++ P S PS S LQ L R QL DV+L + E F+ HKAVLA + AM GMRE +Q+ IEL+D+SAR
Sbjct: 14 PQNSMANQNST-LPCTFSA-PSHSATLLQGLSVLRAQGQLLDVVLAINEERFQVHKAVLASCSDYFRAMFTGGMRESNQDTIELKDLSAR 101
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: L1J5U3_GUITC (BTB domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5U3_GUITC) HSP 1 Score: 60.5 bits (145), Expect = 1.800e-8 Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query: 82 LPPLQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAREVRG-KGVLYEGRL 309
L L L++ LCDV +RVE E+FRAH+ +LA S F +++ G RE +EVI+L + R + +Y G+L
Sbjct: 86 LQGLSQLFQDESLCDVTIRVEDEDFRAHRVILASSSDFFKILLVGGFRESKEEVIKLEGVDKRSFKWILDFIYNGQL 162
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: A0A7S1DT92_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DT92_HEMAN) HSP 1 Score: 60.5 bits (145), Expect = 1.800e-8 Identity = 29/86 (33.72%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 55 RVSRNPSCSLPPLQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAREVRG-KGVLYEGRL 309
+ ++P+ L L +L QLCDV+LRV+G +F+AH+ V+A S L A+++ G +E D++++ L + A R +Y G++
Sbjct: 45 KCDKHPAALLCGLGELLSDGQLCDVVLRVDGVDFQAHRVVVAASSEMLRALLVGGWKESDEKIVRLDGVDAHSFRTILNFIYSGQV 130
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: H2T7Z0_TAKRU (BTB domain-containing protein n=12 Tax=Percomorphaceae TaxID=1489872 RepID=H2T7Z0_TAKRU) HSP 1 Score: 58.5 bits (140), Expect = 8.480e-8 Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1
Query: 1 ADPPNNKMADQSTNGRPTRVSRNPSCSLPPLQDLYESR---QLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAR 270
+D P N MA++++ R T + PS S LQ L R QL DV+L + E F+ H+AVLA + AM GMRE Q+ IEL+ +SAR
Sbjct: 11 SDQPRNSMANKNSTLRCTFSA--PSHSATLLQGLSVLRAQGQLLDVVLAINEERFQVHRAVLAACSDYFRAMFTGGMRESQQDTIELKGLSAR 101
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: A0A6J8AC37_MYTCO (KLHL12 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8AC37_MYTCO) HSP 1 Score: 57.8 bits (138), Expect = 1.570e-7 Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 82 LPPLQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISA 267
L + +L + +LCDV+L+V+GEEF AH+ VLA + AM + M E+D+ VI L +ISA
Sbjct: 24 LTTMNNLRKVNKLCDVVLQVDGEEFPAHRVVLAACSDYFCAMFTNEMSEKDKSVITLHEISA 85
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Match: UPI001471674F (kelch-like protein 26 isoform X1 n=2 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001471674F) HSP 1 Score: 57.4 bits (137), Expect = 2.160e-7 Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 1
Query: 82 LPPLQDLYESRQLCDVILRVEGEEFRAHKAVLACSRSFLGAMMMSGMRERDQEVIELRDISAR 270
L L L QL DV+L + GE F HKAVLA + AM GMRE +Q+ IEL+ +SAR
Sbjct: 47 LQGLSGLRAKGQLLDVVLTINGERFLVHKAVLAACSDYFRAMFTGGMRESNQDTIELKGLSAR 109 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62728.13852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62728.13852.1 >prot_H-elongata_contig62728.13852.1 ID=prot_H-elongata_contig62728.13852.1|Name=mRNA_H-elongata_contig62728.13852.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp MADQSTNGRPTRVSRNPSCSLPPLQDLYESRQLCDVILRVEGEEFRAHKAback to top mRNA from alignment at H-elongata_contig62728:2959..3267+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62728.13852.1 ID=mRNA_H-elongata_contig62728.13852.1|Name=mRNA_H-elongata_contig62728.13852.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig62728:2959..3267+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62728:2959..3267+ >mRNA_H-elongata_contig62728.13852.1 ID=mRNA_H-elongata_contig62728.13852.1|Name=mRNA_H-elongata_contig62728.13852.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig62728:2959..3267+ (Himanthalia elongata Himel1 dioecious)back to top |