mRNA_H-elongata_contig117837.1385.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117837.1385.1
Unique NamemRNA_H-elongata_contig117837.1385.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 100 bits (250), Expect = 1.540e-21
Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = 1
Query:  154 KTVLGTRVAIKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFSVT--KTSIIPSVAGGKAVSKSDSPQTDAEVEKMRQIPYREILGALMWAATMTRPDISFAAHQLAKINDNPGPTH 516
            K+ +GT   I DLG  S+ LG  I+ D  AGTL+ +QH YI+ +  RF+ T  K   +P +   + +SK+  P++ AEV +MR++PYRE +GALM+AA  TRPDI+FA   LA+   NPG  H
Sbjct: 1012 KSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMP-MDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPH 1133          
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Match: A0A2G8SFR3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SFR3_9APHY)

HSP 1 Score: 100 bits (249), Expect = 2.120e-21
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 1
Query:  151 WKTVLGTRVAIKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFSVTKTSIIPSVAGGKA-VSKSDSPQTDAEVEKMRQIPYREILGALMWAATMTRPDISFAAHQLAKINDNPGPTH 516
            +KT L TR  + DLG  S+ LG  +TRD  A TL+ +QH YI ++  RF+      I +       +SK+  P++  +V +M+++PYRE +GALM+AA  TRPDI+FA   LA+ ++NPG TH
Sbjct: 1225 YKTQLSTRYKLTDLGPVSWVLGIKVTRDLEARTLSLSQHSYIDSIITRFNFDDLKPISTPMDPHLQLSKTQCPESALDVARMKRVPYREAIGALMYAAMGTRPDIAFAVSTLAQYSENPGWTH 1347          
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM)

HSP 1 Score: 94.0 bits (232), Expect = 7.780e-21
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  154 KTVLGTRVAIKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFSVTK-TSIIPSVAGGKAVSKSDSPQTDAEVEKMRQIPYREILGALMWAATMTRPDISFAAHQLAKINDNPGPTH 516
            K  L     + DLG  S+ LG  + RDR+   L+ +Q QYI  + ERF ++  T++   +  G  +SK+ +P+   E+  M+ +PYR+++GALM+ A  TRPDIS+A   LA+ + NPGP H
Sbjct:   15 KEELEKHFKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYITDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGH 136          
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Match: A0A060SV79_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SV79_PYCCI)

HSP 1 Score: 96.7 bits (239), Expect = 4.530e-20
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  154 KTVLGTRVAIKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFSVTKTSIIPS-VAGGKAVSKSDSPQTDAEVEKMRQIPYREILGALMWAATMTRPDISFAAHQLAKINDNPGPTH 516
            K  +G    + DLG  S+ LG  I+RD  AGTL+ +QH YI  +  RF+ T    + + +   + +SK+  P++ AEV +MR++PYRE + ALM+AA  TRPDI+FA   LA+    PG  H
Sbjct:  874 KAKIGALYKLTDLGPVSWLLGIKISRDLTAGTLSLSQHAYIDALLARFNFTDLKPVSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAISALMYAALGTRPDIAFAVSTLAQFAQKPGQPH 995          
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Match: A0A4S4LBP1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LBP1_9AGAM)

HSP 1 Score: 94.4 bits (233), Expect = 8.330e-20
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1
Query:  154 KTVLGTRVAIKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFSVTK-TSIIPSVAGGKAVSKSDSPQTDAEVEKMRQIPYREILGALMWAATMTRPDISFAAHQLAKINDNPGPTH 516
            K  L     + DLG  S+ LG  + RDR+   L+ +Q QYI  + ERF ++  T++   +  G  +SK+ +P+   E+  M+ +PYR+++GALM+ A  TRPDIS+A   LA+ + NPGP+H
Sbjct:  155 KEELEKHFKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSH 276          
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Match: A0A401GID0_9APHY (Transposon Ty5-1 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GID0_9APHY)

HSP 1 Score: 94.0 bits (232), Expect = 1.100e-19
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  181 IKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFSVTKT-SIIPSVAGGKAVSKSDSPQTDAEVEKMRQIPYREILGALMWAATMTRPDISFAAHQLAKINDNPGPTH 516
            ++DLG   + LG  I RDR   T++ +Q QYI  M E + ++   S+   +  G  +SK+ +PQT  E E MR++PY   +GALM+ A  TRPDI FA   LA+ N NPGPTH
Sbjct:   54 LRDLGSTQFLLGIDIKRDRAKHTISLSQRQYIVDMLECYGLSDCKSVSTPMDPGAELSKALAPQTQEETEYMRKVPYLSAVGALMYLAITTRPDIMFAISCLARFNANPGPTH 166          
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Match: A0A2R6NIC9_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NIC9_9APHY)

HSP 1 Score: 92.0 bits (227), Expect = 1.150e-19
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  145 PKWKTVLGTRVAIKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFSVTKT-SIIPSVAGGKAVSKSDSPQTDAEVEKMRQIPYREILGALMWAATMTRPDISFAAHQLAKINDNPGPTH 516
            P     L +R  + + G   Y LG HITRDR   T++F+Q  YI  +  R+   +  ++I  +    A+SK     ++ + E+M+  PYRE LGALM+A+  TRPDI++    LAK + NPGPTH
Sbjct:   27 PHLIAALRSRFELSEGGQIHYLLGMHITRDREKRTISFSQSAYINCILTRYQFDEIRTVITPMDPNVALSKEQCATSERQQEEMKNKPYREALGALMYASVGTRPDITYTVSTLAKFSQNPGPTH 151          
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Match: A0A8H7FC24_AGABI (Integrase catalytic domain-containing protein n=2 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7FC24_AGABI)

HSP 1 Score: 95.5 bits (236), Expect = 1.170e-19
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  148 KWKTVLGTRVAIKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFSVT--KTSIIPSVAGGKAVSKSDSPQTDAEVEKMRQIPYREILGALMWAATMTRPDISFAAHQLAKINDNPGPTH 516
            K K  LG    IKDLG A + LG  I R R+ G +  +Q  Y + + ERF ++  K    P +  G  +S  DSP+TD E E M  +PYRE+LG+LMW    TRPD+SFA + L++  +NPG +H
Sbjct: 1151 KAKDELGRSYEIKDLGEAKFILGMRIERGRS-GDVRLSQRAYCERIIERFKLSDLKPRSTP-LPAGLTLSIEDSPKTDEEREDMNGVPYREVLGSLMWLQVATRPDLSFAVNMLSRFANNPGRSH 1273          
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Match: A0A8H7F6Y3_AGABI (Integrase catalytic domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F6Y3_AGABI)

HSP 1 Score: 95.5 bits (236), Expect = 1.170e-19
Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  154 KTVLGTRVAIKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFSVTKTSIIPSVAGGKAV-SKSDSPQTDAEVEKMRQIPYREILGALMWAATMTRPDISFAAHQLAKINDNPGPTH 516
            K+ LG    +KDLG A++ LG  I RD   G++T +Q  Y + + ERF +      P+      V S  D PQT+ E  +M+ +PYRE LG+LMW    TRPD+SFA + L++  +NPG  H
Sbjct: 1159 KSELGRSYKLKDLGQANFILGMKIERDETTGSITLSQRAYCERILERFHMQDAKPQPTPLKPNIVLSIDDMPQTEQEKLEMKNVPYREALGSLMWLQVATRPDLSFAVNLLSRFANNPGRKH 1280          
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Match: A0A4S4L7S0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L7S0_9AGAM)

HSP 1 Score: 93.2 bits (230), Expect = 1.490e-19
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  154 KTVLGTRVAIKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFSVTK-TSIIPSVAGGKAVSKSDSPQTDAEVEKMRQIPYREILGALMWAATMTRPDISFAAHQLAKINDNPGPTH 516
            K  L     + DLG  S+ LG  + RDR+   L+ +Q QYI  + ERF ++  T++   +  G  +SK+ +P+   E+  M+ +PYR+++GALM+ A  TRPDIS+A   LA+ + NPGP H
Sbjct:   15 KEELEKHFKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGH 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117837.1385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A060SPD4_PYCCI1.540e-2145.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A2G8SFR3_9APHY2.120e-2143.09Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A4S4K4A0_9AGAM7.780e-2139.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SV79_PYCCI4.530e-2041.80Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A4S4LBP1_9AGAM8.330e-2039.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GID0_9APHY1.100e-1944.25Transposon Ty5-1 protein n=1 Tax=Sparassis crispa ... [more]
A0A2R6NIC9_9APHY1.150e-1939.20Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A8H7FC24_AGABI1.170e-1943.20Integrase catalytic domain-containing protein n=2 ... [more]
A0A8H7F6Y3_AGABI1.170e-1940.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A4S4L7S0_9AGAM1.490e-1939.34Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117837contigH-elongata_contig117837:621..1139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.4
Seed ortholog evalue6.8e-18
Seed eggNOG ortholog2711.XP_006471604.1
KEGG rclassRC00478,RC00661
KEGG koko:K04125
KEGG ReactionR03008,R03809,R06337,R06338
KEGG Pathwayko00904,ko01110,map00904,map01110
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008300,GO:0009056,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009685,GO:0009987,GO:0010817,GO:0016042,GO:0016054,GO:0016101,GO:0016103,GO:0016115,GO:0016491,GO:0016705,GO:0016706,GO:0019752,GO:0042445,GO:0042447,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0045487,GO:0045543,GO:0046395,GO:0050896,GO:0051213,GO:0052634,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:1901575
EggNOG free text desc.Belongs to the iron ascorbate-dependent oxidoreductase family
EggNOG OGs37R49@33090,3G77N@35493,COG2801@1,COG3491@1,KOG0017@2759,KOG0143@2759
EC1.14.11.13
COG Functional cat.Q
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size519
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.9867458-CDS-H-elongata_contig117837:620..11391622929686.9867458-CDS-H-elongata_contig117837:620..1139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117837 621..1139 +
1691679119.1955063-CDS-H-elongata_contig117837:620..11391691679119.1955063-CDS-H-elongata_contig117837:620..1139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117837 621..1139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117837.1385.1prot_H-elongata_contig117837.1385.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117837 621..1139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117837.1385.1

>prot_H-elongata_contig117837.1385.1 ID=prot_H-elongata_contig117837.1385.1|Name=mRNA_H-elongata_contig117837.1385.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
CGSARQLDPEPTTMGEAQASSEWPQWKRAIAREMDVQTARGVWQVVERPK
WKTVLGTRVAIKDLGGASYYLGCHITRDRNAGTLTFNQHQYIQTMAERFS
VTKTSIIPSVAGGKAVSKSDSPQTDAEVEKMRQIPYREILGALMWAATMT
RPDISFAAHQLAKINDNPGPTH*
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mRNA from alignment at H-elongata_contig117837:621..1139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117837.1385.1 ID=mRNA_H-elongata_contig117837.1385.1|Name=mRNA_H-elongata_contig117837.1385.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at H-elongata_contig117837:621..1139+ (Himanthalia elongata Himel1 dioecious)
TGCGGGTCTGCGAGGCAGCTAGACCCAGAGCCGACAACCATGGGCGAGGC GCAAGCGTCGTCGGAGTGGCCACAATGGAAAAGGGCGATCGCGCGCGAGA TGGATGTGCAAACTGCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCCAAAA TGGAAGACGGTGTTGGGCACGAGAGTAGCCATCAAGGATCTGGGGGGGGC TTCGTATTACCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACAC TGACGTTCAACCAGCATCAGTACATACAGACTATGGCGGAACGTTTTAGC GTGACGAAGACCAGCATCATCCCGTCCGTGGCAGGAGGAAAAGCCGTTTC GAAATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAAAAATGCGCCAGA TTCCCTACCGAGAAATCCTTGGGGCCCTAATGTGGGCAGCGACAATGACC AGGCCCGACATTTCATTCGCTGCGCACCAACTGGCGAAAATCAACGACAA CCCGGGGCCGACACACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig117837:621..1139+

>mRNA_H-elongata_contig117837.1385.1 ID=mRNA_H-elongata_contig117837.1385.1|Name=mRNA_H-elongata_contig117837.1385.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig117837:621..1139+ (Himanthalia elongata Himel1 dioecious)
TGCGGGTCTGCGAGGCAGCTAGACCCAGAGCCGACAACCATGGGCGAGGC
GCAAGCGTCGTCGGAGTGGCCACAATGGAAAAGGGCGATCGCGCGCGAGA
TGGATGTGCAAACTGCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCCAAAA
TGGAAGACGGTGTTGGGCACGAGAGTAGCCATCAAGGATCTGGGGGGGGC
TTCGTATTACCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACAC
TGACGTTCAACCAGCATCAGTACATACAGACTATGGCGGAACGTTTTAGC
GTGACGAAGACCAGCATCATCCCGTCCGTGGCAGGAGGAAAAGCCGTTTC
GAAATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAAAAATGCGCCAGA
TTCCCTACCGAGAAATCCTTGGGGCCCTAATGTGGGCAGCGACAATGACC
AGGCCCGACATTTCATTCGCTGCGCACCAACTGGCGAAAATCAACGACAA
CCCGGGGCCGACACACTGATGCGGGTCTGCGAGGCAGCTAGACCCAGAGC
CGACAACCATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCACAATGGAAA
AGGGCGATCGCGCGCGAGATGGATGTGCAAACTGCTCGAGGCGTGTGGCA
GGTGGTGGAGCGCCCAAAATGGAAGACGGTGTTGGGCACGAGAGTAGCCA
TCAAGGATCTGGGGGGGGCTTCGTATTACCTGGGATGCCACATCACGCGG
GACCGGAACGCCGGGACACTGACGTTCAACCAGCATCAGTACATACAGAC
TATGGCGGAACGTTTTAGCGTGACGAAGACCAGCATCATCCCGTCCGTGG
CAGGAGGAAAAGCCGTTTCGAAATCAGACAGCCCGCAAACGGACGCAGAG
GTTGAAAAAATGCGCCAGATTCCCTACCGAGAAATCCTTGGGGCCCTAAT
GTGGGCAGCGACAATGACCAGGCCCGACATTTCATTCGCTGCGCACCAAC
TGGCGAAAATCAACGACAACCCGGGGCCGACACACTGA
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