mRNA_H-elongata_contig627.13847.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig627.13847.1
Unique NamemRNA_H-elongata_contig627.13847.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig627.13847.1 vs. uniprot
Match: A0A3R7W783_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7W783_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.670e-9
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:   74 MRDMPSGRAKNMFLTAGLPLVTFIVGGTYMLSQFVSGQVHVKDINRKRSKSIREFDIDEEHXXXXXXXXXX-YEIKRVPRPDD 319
            MR     + KN F+TAGLPLV FIVGG   L+QFV G+   +D +  +S+S  +F+++EEH           +E+K VPRP D
Sbjct:   18 MRPKKQYKKKNHFITAGLPLVLFIVGGYVALTQFVGGKYEARD-HHVKSQSEHKFNLEEEHKKMTAKLALDDFELKPVPRPKD 99
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BLAST of mRNA_H-elongata_contig627.13847.1 vs. uniprot
Match: A0A484DZM0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZM0_BRELC)

HSP 1 Score: 61.6 bits (148), Expect = 2.270e-8
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 2 
Query:   95 RAKNMFLTAGLPLVTFIVGGTYMLSQFVSGQVHVKDINRKRSKSIREFDIDEEHXXXXXXXXXX-YEIKRVPRPDD 319
            + KN FLTAGLPLV FIVGG   L+QFV G+   KD +  +S+S+  F+++EEH           +E+K +P+P D
Sbjct:   95 KKKNYFLTAGLPLVLFIVGGYVTLTQFVGGKFEAKD-HLIKSQSVHTFNLEEEHTKMTKKLALDDFELKPIPKPKD 169
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BLAST of mRNA_H-elongata_contig627.13847.1 vs. uniprot
Match: W7U059_9STRA (Cytochrome c oxidase assembly protein COX16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U059_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.360e-7
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 2 
Query:  113 LTAGLPLVTFIVGGTYMLSQFVSGQVHVKDINRKRSKSIREFDIDEEHXXXXXXXXXX--YEIKRVPRPDD 319
            L+AGLPL+ F+ GG+  L++FV G+V  KD ++ +S+S REF I+EEH            Y++ R+ RP+D
Sbjct:   10 LSAGLPLLVFLTGGSLFLAKFVQGRVEAKD-SKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPED 79
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BLAST of mRNA_H-elongata_contig627.13847.1 vs. uniprot
Match: A0A5D6XXA2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXA2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.250e-7
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 2 
Query:  110 FLTAGLPLVTFIVGGTYMLSQFVSGQVHVKDINRKRSKSIREFDIDEEHXXXXXXXXXX-YEIKRVPRPDD 319
            F T GLPL+ F+ GG + L+QFV G+   +D +  +S + REFD++EEH           +EIK VP+P D
Sbjct:   40 FATVGLPLLLFVAGGYFALTQFVGGKFEARD-HMIKSNTTREFDLEEEHKKITKKLVLDDFEIKPVPKPKD 109
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BLAST of mRNA_H-elongata_contig627.13847.1 vs. uniprot
Match: A0A8K1FKK9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKK9_PYTOL)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-6
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 2 
Query:  101 KNMFLTAGLPLVTFIVGGTYMLSQFVSGQVHVKDINRKRSKSIREFDIDEEHXXXXXXXXXX-YEIKRVPRPDD 319
            ++ F+T G+PL+ F+VGG   L+QFV G+   +D +R +S+S R FD++EEH           +E+K VPR D+
Sbjct:   34 QSRFVTVGMPLLLFVVGGYATLTQFVGGKYEARD-HRIKSQSTRAFDLEEEHKKMTQKLILDDFELKPVPRLDE 106
[Close]
BLAST of mRNA_H-elongata_contig627.13847.1 vs. uniprot
Match: A0A2D4BSG3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSG3_PYTIN)

HSP 1 Score: 52.0 bits (123), Expect = 6.440e-5
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:   95 RAKNMFLTAGLPLVTFIVGGTYMLSQFVSGQVHVKDINRKRSKSIREFDIDEEH 256
            R+ + F+T G+PL+ F+VGG   LSQFV G+   +D ++ +S+S R FD++EEH
Sbjct:   40 RSTSRFVTYGMPLLLFVVGGFMTLSQFVGGKYEARD-HKIKSQSTRAFDLEEEH 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig627.13847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A3R7W783_9STRA3.670e-943.37Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A484DZM0_BRELC2.270e-844.74Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
W7U059_9STRA6.360e-742.25Cytochrome c oxidase assembly protein COX16 n=2 Ta... [more]
A0A5D6XXA2_9STRA9.250e-742.25Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1FKK9_PYTOL1.740e-640.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BSG3_PYTIN6.440e-546.30Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig627contigH-elongata_contig627:7852..9378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size647
Cds size423
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig627.13847.1prot_H-elongata_contig627.13847.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig627 7852..9154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931010.043137-CDS-H-elongata_contig627:7851..80231622931010.043137-CDS-H-elongata_contig627:7851..8023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig627 7852..8023 +
1691679660.974733-CDS-H-elongata_contig627:7851..80231691679660.974733-CDS-H-elongata_contig627:7851..8023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig627 7852..8023 +
1622931010.0578551-CDS-H-elongata_contig627:8586..86641622931010.0578551-CDS-H-elongata_contig627:8586..8664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig627 8587..8664 +
1691679660.9848907-CDS-H-elongata_contig627:8586..86641691679660.9848907-CDS-H-elongata_contig627:8586..8664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig627 8587..8664 +
1622931010.0790024-CDS-H-elongata_contig627:8981..91541622931010.0790024-CDS-H-elongata_contig627:8981..9154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig627 8982..9154 +
1691679660.9950643-CDS-H-elongata_contig627:8981..91541691679660.9950643-CDS-H-elongata_contig627:8981..9154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig627 8982..9154 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931010.12388-UTR-H-elongata_contig627:9154..93781622931010.12388-UTR-H-elongata_contig627:9154..9378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig627 9155..9378 +
1691679661.005001-UTR-H-elongata_contig627:9154..93781691679661.005001-UTR-H-elongata_contig627:9154..9378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig627 9155..9378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig627.13847.1

>prot_H-elongata_contig627.13847.1 ID=prot_H-elongata_contig627.13847.1|Name=mRNA_H-elongata_contig627.13847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
LHSTCRSSHVPTSHHRVHGTPRGLYARYAFWPCEKHVLNGWITFSYVYRG
WDVHAVAVCLWTGSCERHQPKKEQEHQRVRYRRGASKNHERFRGRLRNQK
GAPTRRLRGSCHMAYGLLRGCHPEEVSVTWQQRVTCRFFH*
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mRNA from alignment at H-elongata_contig627:7852..9378+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig627.13847.1 ID=mRNA_H-elongata_contig627.13847.1|Name=mRNA_H-elongata_contig627.13847.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1527bp|location=Sequence derived from alignment at H-elongata_contig627:7852..9378+ (Himanthalia elongata Himel1 dioecious)
CTCCACTCTACATGCCGATCGAGTCACGTTCCAACCTCGCACCACCGTGT
TCACGGCACGCCACGCGGACTGTATGCGAGATATGCCTTCTGGCCGTGCG
AAAAACATGTTCTTAACGGCTGGATTACCTTTAGTTACGTTTATCGTGGG
TGGGACGTACATGCTGTCGCAGGTGTGTAAATCGTTCTGCGCTCTTATAC
TCACTGGAAAATTACTGGAAACTTGTGTACAACGGGTTTTCGCGATGTTA
GAATACCCATGGTCCAGATGGTAACCTCGAAACCCTCTGACTTTGGGACG
TGAGGTCAAATCTCGGCGGAGTCACACGAACTAGGATTTTCTCTCACATC
ATGCTCAACAAGTGGAGAACGATTATTTCGTGGGTTCACTAAATTCGACT
TAACGGCTGACGAGGGAAAGGGACTGCTGAACCCTTTTCGCGATAAAAAA
ATTAAGGCAAGCACCGCAGAAGGAAGGTTGAGAAATCATGTGTGACCTTC
CTCTTGTGTGACCCCGGCTGGTGCATCCACAAGTCTGACGTCCAGAATTA
ATGGGATAACAACACAATACTGAACAGTAGTAAGTAACATGTCTGAGTTA
GCTCTGTTTTATATAAGCTTTCGACAGAGGCGCTTCCTTCTCTGCTCTAG
CGGCGTGCCTTTGTTCACGTGGCTCACACACATTGTTGCATAATATCTCC
TTTTCAATATAAGCCCCGCTTGCCCGCCTGTACAGTTTGTCTCTGGACAG
GTTCATGTGAAAGACATCAACCGAAAAAGGAGCAAGAGCATCAGAGAGTT
CGATATCGACGAGGTGAAATATCATTACATATCGTCTTCACCTCCATGTT
TCATTCTCCTTAATCGAGAAGATTCCTACCATCGGAACGAGTCTCTGCAG
ATAGTTGAACGTATGTTTTACGCCAAGGATGAAGGTCCCAAGGCGCGTAC
GTAGCCCAAGAATTATCATAATATCGTGGGCAACCCCACCTCACCCCACC
AGTTTGTTTTGTCTATCCCTTACACCATGCAGCATAATTTATATATCCTG
AGTTCGTATTTCCCCCCCCTCCCAAAATGCGTTGTCCGACTCTTTGCCGT
CTGTACTACCCCTGCTTTTCTCGTTTGTAGGAGCATCGAAAAATCATGAA
AGATTTCGAGGAAGACTACGAAATCAAAAGGGTGCCCCGACCAGACGATT
GAGAGGTTCATGCCATATGGCCTATGGCCTACTACGGGGGTGCCACCCCG
AAGAAGTGTCAGTTACATGGCAGCAAAGAGTAACATGTCGTTTTTTTCAT
TAGTTGCTATTCTTCTTGGTGTTACACATCTTATCTTCAGATTATTTCGG
GGCAATCCGATCTGGACCCTCGGAAGACCCGACCGAGGCGATGATCTATA
CTAAGATACTTTACGATCGTAGAAGTATACAGGCTGGGCCGACTACAAAA
CACACACAGCGGTAATCTCGCGATGCTCAGCTGAGTTTTTCGAATTTGGT
CCTGAAATTTTGACACATGATTTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig627:7852..9378+

>mRNA_H-elongata_contig627.13847.1 ID=mRNA_H-elongata_contig627.13847.1|Name=mRNA_H-elongata_contig627.13847.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig627:7852..9378+ (Himanthalia elongata Himel1 dioecious)
CTCCACTCTACATGCCGATCGAGTCACGTTCCAACCTCGCACCACCGTGT
TCACGGCACGCCACGCGGACTGTATGCGAGATATGCCTTCTGGCCGTGCG
AAAAACATGTTCTTAACGGCTGGATTACCTTTAGTTACGTTTATCGTGGG
TGGGACGTACATGCTGTCGCAGCTCCACTCTACATGCCGATCGAGTCACG
TTCCAACCTCGCACCACCGTGTTCACGGCACGCCACGCGGACTGTATGCG
AGATATGCCTTCTGGCCGTGCGAAAAACATGTTCTTAACGGCTGGATTAC
CTTTAGTTACGTTTATCGTGGGTGGGACGTACATGCTGTCGCAGTTTGTC
TCTGGACAGGTTCATGTGAAAGACATCAACCGAAAAAGGAGCAAGAGCAT
CAGAGAGTTCGATATCGACGAGTTTGTCTCTGGACAGGTTCATGTGAAAG
ACATCAACCGAAAAAGGAGCAAGAGCATCAGAGAGTTCGATATCGACGAG
GAGCATCGAAAAATCATGAAAGATTTCGAGGAAGACTACGAAATCAAAAG
GGTGCCCCGACCAGACGATTGAGAGGTTCATGCCATATGGCCTATGGCCT
ACTACGGGGGTGCCACCCCGAAGAAGTGTCAGTTACATGGCAGCAAAGAG
TAACATGTCGTTTTTTTCATTAGGAGCATCGAAAAATCATGAAAGATTTC
GAGGAAGACTACGAAATCAAAAGGGTGCCCCGACCAGACGATTGAGAGGT
TCATGCCATATGGCCTATGGCCTACTACGGGGGTGCCACCCCGAAGAAGT
GTCAGTTACATGGCAGCAAAGAGTAACATGTCGTTTTTTTCATTAG
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