mRNA_H-elongata_contig627.13846.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig627.13846.1
Unique NamemRNA_H-elongata_contig627.13846.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig627.13846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig627contigH-elongata_contig627:6349..7230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931009.9635513-CDS-H-elongata_contig627:6348..65381622931009.9635513-CDS-H-elongata_contig627:6348..6538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig627 6349..6538 -
1691679660.94162-CDS-H-elongata_contig627:6348..65381691679660.94162-CDS-H-elongata_contig627:6348..6538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig627 6349..6538 -
1622931009.9859817-CDS-H-elongata_contig627:7159..72301622931009.9859817-CDS-H-elongata_contig627:7159..7230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig627 7160..7230 -
1691679660.9624736-CDS-H-elongata_contig627:7159..72301691679660.9624736-CDS-H-elongata_contig627:7159..7230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig627 7160..7230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig627.13846.1prot_H-elongata_contig627.13846.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig627 6349..7230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig627.13846.1

>prot_H-elongata_contig627.13846.1 ID=prot_H-elongata_contig627.13846.1|Name=mRNA_H-elongata_contig627.13846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
KIRRTCTRKFWEGYEFACPIMCSRKGLNAAVTAVLERAEEGSERSGAADR
NHEGGSEAERDRPDMRQASQEKRSSANGVDAITSRGQ
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mRNA from alignment at H-elongata_contig627:6349..7230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig627.13846.1 ID=mRNA_H-elongata_contig627.13846.1|Name=mRNA_H-elongata_contig627.13846.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=882bp|location=Sequence derived from alignment at H-elongata_contig627:6349..7230- (Himanthalia elongata Himel1 dioecious)
AAAATTAGGCGGACATGTACTCGCAAGTTTTGGGAAGGATATGAATTTGC
ATGTCCAATCATGTGCTCTCGGTGAGGCGCTGCGTATATCAGCTTCATAA
GCTGACGTCCGAAAGGTTGAAAGGGGCGGCGCAAACTTGTCAAGTCGGAG
GGTTCGCACATTTTGTATCCGGATCTAAAAATATGATCCATCTTTTGAAT
TGTGTATCAAAAGATTGCCGTCCCATGCTAATCAATATATTATCATTCCA
CAAGGCGATGTTGCGAAGCCGTTGAACCTGCAGCCCAGCGGAACTCTCAA
GAACCTGCATCCGACTTACCTGGTAGAAGTTATAAACCTACGGCGTGAAT
GCATAGGGAGTCGTGTATCGATTAAATAGAGCGTCACAAAGCACCTTAAC
GAAGTTTTCTAATCCCTACATCCCCTCCATGCGTCCTTCCAAGCATCACT
GCTGGTGGCAATAGCGATATCCGCCCCTGGATTGAACGCATCACGCAAAA
CATGTGTCAAGGCATGTCTGGCGCCATTCCTTATCCCACGACATTCAACG
CGTGTAAGCAGGGATACAGGCGAGTTGTACATTTGAACGCTGACCTTGGC
GGTGATAACATTGACCAAATATCAAGTTAAAAGCATTCATGTAGGGTTGA
TGGCTATCACTAATCTTAAAAGTTCATAATTCGTCGTTCCAGCAAAGGCC
TCAATGCGGCGGTGACTGCCGTATTGGAAAGAGCAGAAGAAGGCAGCGAG
AGATCGGGAGCTGCCGACAGAAATCATGAGGGTGGATCCGAAGCTGAACG
AGATCGACCTGATATGAGGCAGGCCAGTCAAGAAAAGCGTAGCTCCGCAA
ACGGCGTAGATGCGATAACATCTCGAGGACAG
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Coding sequence (CDS) from alignment at H-elongata_contig627:6349..7230-

>mRNA_H-elongata_contig627.13846.1 ID=mRNA_H-elongata_contig627.13846.1|Name=mRNA_H-elongata_contig627.13846.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig627:6349..7230- (Himanthalia elongata Himel1 dioecious)
AAAATTAGGCGGACATGTACTCGCAAGTTTTGGGAAGGATATGAATTTGC
ATGTCCAATCATGTGCTCTCGAAAATTAGGCGGACATGTACTCGCAAGTT
TTGGGAAGGATATGAATTTGCATGTCCAATCATGTGCTCTCGCAAAGGCC
TCAATGCGGCGGTGACTGCCGTATTGGAAAGAGCAGAAGAAGGCAGCGAG
AGATCGGGAGCTGCCGACAGAAATCATGAGGGTGGATCCGAAGCTGAACG
AGATCGACCTGATATGAGGCAGGCCAGTCAAGAAAAGCGTAGCTCCGCAA
ACGGCGTAGATGCGATAACATCTCGAGGACAGCAAAGGCCTCAATGCGGC
GGTGACTGCCGTATTGGAAAGAGCAGAAGAAGGCAGCGAGAGATCGGGAG
CTGCCGACAGAAATCATGAGGGTGGATCCGAAGCTGAACGAGATCGACCT
GATATGAGGCAGGCCAGTCAAGAAAAGCGTAGCTCCGCAAACGGCGTAGA
TGCGATAACATCTCGAGGACAG
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