mRNA_H-elongata_contig62626.13837.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62626.13837.1
Unique NamemRNA_H-elongata_contig62626.13837.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig62626.13837.1 vs. uniprot
Match: D8LIW6_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW6_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 6.360e-55
Identity = 111/199 (55.78%), Postives = 132/199 (66.33%), Query Frame = 1 
Query:    1 YLGLTTILKVPELKAQIAEGDVAVEDLENAWLEACAVEGEGTIDPVNACGS-----YRRSWGVCSELDFNGFVRFLGLCEAKAPLPKASNASLEARSHLGVDIGRDLLVARQRMAGLLRATLTVHQRDNMSENEEGHHSRDPVNLRGEELHSVMVRAALEGGLAHHTPETLRELTRTGVYRDAMKGGKSDRDLKKVCQR 582
            ++GL ++LK+ E+KAQIAEGDV VEDLE+AWLEACAV+G  ++DP +  G       R SWGVC+EL F GFV FL LCE KA L      + EA S      GRDL+ AR RM GLLRATLTVHQR    E EE  H  D     GE LHS MVRAA+E GLAHH P+ L EL RTGVY+++ +G + DRD KK   R
Sbjct:   38 FVGLRSVLKLKEVKAQIAEGDVYVEDLESAWLEACAVKGVSSVDPEDGKGGTHHVHQRSSWGVCTELSFEGFVHFLRLCEEKASLSTDLATATEA-SPKDPATGRDLVAARHRMVGLLRATLTVHQRGGGGEEEEIEHPADLNAPLGETLHSSMVRAAVEEGLAHHNPDVLHELMRTGVYKESEEGVQLDRDEKKASLR 235
[Close]
BLAST of mRNA_H-elongata_contig62626.13837.1 vs. uniprot
Match: A0A6H5L494_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L494_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.510e-18
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:  325 MAGLLRATLTVHQRDNMSENEEGHHSRDPVNLRGEELHSVMVRAALEGGLAHHTPETLRELTRTGVYRDAMKGGKSDRDLKKVCQR 582
            M GLLRATLTVHQR    E EE  H  D     GE LH+ MVRAA+E GLAHH    L EL RTGVY++   G + DRD KK C R
Sbjct:    1 MVGLLRATLTVHQRGGGGEEEENEHPADRNAPLGETLHTSMVRAAVEEGLAHHNTVMLHELMRTGVYKEPGDGVQLDRDEKKACLR 86
[Close]
BLAST of mRNA_H-elongata_contig62626.13837.1 vs. uniprot
Match: A0A835YKI0_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKI0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.460e-12
Identity = 45/131 (34.35%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:    4 LGLTTILKVPELKAQIAEGDVAVEDLENAWLEACAVEGEGTIDPVNACGSYRRSWGVCSELDFNGFVRFLGLCEAKAPLPKASNASLEARSHLGVDIGR----------DLLVARQRMAGLLRATLTVHQR 366
            L    +LKV E+ +Q+A GD+  ED+E  WLEA +  G  +++P    G    SWGV + L+F GF+  + +CE K     A    + A     V +             + +ARQ +AGL+RATL +H R
Sbjct:   63 LDFDALLKVDEVASQLAAGDLCTEDVEAMWLEAVSCPGATSLEPGAEMGP--SSWGVRTPLNFRGFLELIRVCEEKTASLGAQPGEVAATYERPVQLVAGAAATQRARWQIAMARQHLAGLMRATLVLHGR 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62626.13837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIW6_ECTSI6.360e-5555.78EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L494_9PHAE3.510e-1856.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKI0_9STRA1.460e-1234.35EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62626contigH-elongata_contig62626:112..1988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size582
Cds size582
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62626.13837.1prot_H-elongata_contig62626.13837.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62626 112..1988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931009.025394-CDS-H-elongata_contig62626:111..2251622931009.025394-CDS-H-elongata_contig62626:111..225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62626 112..225 +
1691679660.5178432-CDS-H-elongata_contig62626:111..2251691679660.5178432-CDS-H-elongata_contig62626:111..225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62626 112..225 +
1622931009.0454164-CDS-H-elongata_contig62626:755..8881622931009.0454164-CDS-H-elongata_contig62626:755..888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62626 756..888 +
1691679660.528751-CDS-H-elongata_contig62626:755..8881691679660.528751-CDS-H-elongata_contig62626:755..888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62626 756..888 +
1622931009.0645578-CDS-H-elongata_contig62626:1176..13221622931009.0645578-CDS-H-elongata_contig62626:1176..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62626 1177..1322 +
1691679660.5386531-CDS-H-elongata_contig62626:1176..13221691679660.5386531-CDS-H-elongata_contig62626:1176..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62626 1177..1322 +
1622931009.084782-CDS-H-elongata_contig62626:1799..19881622931009.084782-CDS-H-elongata_contig62626:1799..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62626 1800..1988 +
1691679660.5576808-CDS-H-elongata_contig62626:1799..19881691679660.5576808-CDS-H-elongata_contig62626:1799..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62626 1800..1988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62626.13837.1

>prot_H-elongata_contig62626.13837.1 ID=prot_H-elongata_contig62626.13837.1|Name=mRNA_H-elongata_contig62626.13837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
YLGLTTILKVPELKAQIAEGDVAVEDLENAWLEACAVEGEGTIDPVNACG
SYRRSWGVCSELDFNGFVRFLGLCEAKAPLPKASNASLEARSHLGVDIGR
DLLVARQRMAGLLRATLTVHQRDNMSENEEGHHSRDPVNLRGEELHSVMV
RAALEGGLAHHTPETLRELTRTGVYRDAMKGGKSDRDLKKVCQR
back to top

mRNA from alignment at H-elongata_contig62626:112..1988+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62626.13837.1 ID=mRNA_H-elongata_contig62626.13837.1|Name=mRNA_H-elongata_contig62626.13837.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1877bp|location=Sequence derived from alignment at H-elongata_contig62626:112..1988+ (Himanthalia elongata Himel1 dioecious)
TACCTTGGCCTGACGACGATCCTGAAAGTCCCCGAGCTCAAGGCACAGAT
CGCCGAGGGCGACGTCGCCGTTGAGGATCTCGAGAACGCCTGGCTCGAGG
CGTGCGCGGTGGAGGTACGTTATGGCAATGCAATGCGCTGCTTCACGAAC
ACGCGAAGGGATGTATTCTCGAACCAAGTACACCACGTGTGGGGTTTTTT
TTGCAGCCTTGTGGAGACGCTAGGCTCTTGCCACAACGCGAAACTGTACC
ATTTTAATTCCTCGCGTTTATCGTGTATCAGGTGTAAATATCTCAGAGGC
GTGCGAAGAGTGGCGGTATGGACCCTTTTTTTTTGGTAGGCGATCTTTTA
CACCACGGACGGACTGTACTCCGCGCCCATTCCCCCTCGGTGGGAAAGAA
GCGCTGCCCGAAAAACGGTGGATCCGTCACCGTTTTACAAAATCCCATTA
CCAAAAAAAAAAAGGCTGCCTCGAAAGAGCAAGCGCGGGTGTCGGTAAAT
AGGGTGAGCGTGCTCTCTGTACATGGAAAGCGAAGTAACTTGTGTAAAGT
GTGACGTACTCGTTCTATTTGTTGTGCTGATTGTCTGCACACCTCCGACG
GCTTCGCTTTTTCTGCGGAACGTCGAATTTTTGGCACACTGCAGGGAGAG
GGTACGATCGACCCCGTGAACGCCTGCGGGAGCTACCGGCGGTCGTGGGG
GGTGTGCTCGGAGCTCGACTTCAATGGCTTCGTGCGCTTTCTCGGCCTGT
GCGAGGCGAAGGCACCGCTTCCGAAAGGTTTGCCCTATATCCGTGACGTC
TAGGTTTGGGCCATTCCTTGTAGAATGGGAGACGATGACGACGCGTACCG
TCGGTGTTGTTTTCTTAAACACCTCAGGAACTACCCCCCCCACTCTCTCA
CACACACACTCACACCTCCTCCTCCCTTGCCTCAAACATAAACTCTCCTT
TTCCCCCACCCTTCCGATCAGACATCTTGATATTTTCACAGCTGCCGAAA
TCGAGCGAGCGAGCATTACCTCCTGAAACGACGTGCGCGCCTGTTTCCAC
TCGTCTCTGGCACAGCTTCTAATGCGTCGCTGGAGGCTCGTTCGCATCTC
GGCGTCGATATCGGGCGAGATCTCCTGGTCGCAAGGCAAAGGATGGCAGG
GCTGCTGCGCGCCACACTCACCGTGCACCAGCGGGATAATATGTCGGAGA
ACGAAGAGGGCGTGAATGAGTGCCGCACGCTAGGGGTGAGTCAACCGAGC
AGAGTGGATGCCGTCTGCCATGGAGAGGGCGGGGCTTACGCGGATATAAA
TAACAAAGTGCCTGCGCTTATACTGAAAATTAGTAGTAGTATCAGTAGTG
GTGGGTGGTCGGTGTTGGTGAAGGCGTTTTATTTTCCTCGCGGATCGCAT
GTTCGTGGAAATCTCGAGCGCCCTGCCTTCCACAGGGGGCGTTTTACCGC
TGCTCGTCCGGTGTGACATACACTTTTGATCGAAGCGTTATTTTTTTATT
TCAGGAGACCATAATATGTGTAGCGTATCGTTAATCCTCCTTCTGTCGCG
TGCCGTTTCGTTTCAAGCCGGGGCACTCCACGCACACCCAACGCGACACG
GCGTCCATCGAATAATGCTTTGAATTTCCAGATAATATAAATATGTTACC
CTTTCGTGTGATCTTTTTTCGCGTCCCCTCAAAAGAAGCACCACTCAAGG
GATCCCGTCAACCTGCGCGGTGAAGAGCTCCACTCGGTCATGGTTCGCGC
AGCGCTCGAGGGAGGGTTGGCGCACCACACACCGGAAACGCTGCGCGAGC
TCACGCGGACCGGGGTGTACAGGGACGCGATGAAAGGAGGAAAGTCGGAC
CGGGATCTGAAAAAGGTGTGCCAACGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig62626:112..1988+

>mRNA_H-elongata_contig62626.13837.1 ID=mRNA_H-elongata_contig62626.13837.1|Name=mRNA_H-elongata_contig62626.13837.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig62626:112..1988+ (Himanthalia elongata Himel1 dioecious)
TACCTTGGCCTGACGACGATCCTGAAAGTCCCCGAGCTCAAGGCACAGAT
CGCCGAGGGCGACGTCGCCGTTGAGGATCTCGAGAACGCCTGGCTCGAGG
CGTGCGCGGTGGAGTACCTTGGCCTGACGACGATCCTGAAAGTCCCCGAG
CTCAAGGCACAGATCGCCGAGGGCGACGTCGCCGTTGAGGATCTCGAGAA
CGCCTGGCTCGAGGCGTGCGCGGTGGAGGGAGAGGGTACGATCGACCCCG
TGAACGCCTGCGGGAGCTACCGGCGGTCGTGGGGGGTGTGCTCGGAGCTC
GACTTCAATGGCTTCGTGCGCTTTCTCGGCCTGTGCGAGGCGAAGGCACC
GCTTCCGAAAGGGAGAGGGTACGATCGACCCCGTGAACGCCTGCGGGAGC
TACCGGCGGTCGTGGGGGGTGTGCTCGGAGCTCGACTTCAATGGCTTCGT
GCGCTTTCTCGGCCTGTGCGAGGCGAAGGCACCGCTTCCGAAAGCTTCTA
ATGCGTCGCTGGAGGCTCGTTCGCATCTCGGCGTCGATATCGGGCGAGAT
CTCCTGGTCGCAAGGCAAAGGATGGCAGGGCTGCTGCGCGCCACACTCAC
CGTGCACCAGCGGGATAATATGTCGGAGAACGAAGAGGGCCTTCTAATGC
GTCGCTGGAGGCTCGTTCGCATCTCGGCGTCGATATCGGGCGAGATCTCC
TGGTCGCAAGGCAAAGGATGGCAGGGCTGCTGCGCGCCACACTCACCGTG
CACCAGCGGGATAATATGTCGGAGAACGAAGAGGGCCACCACTCAAGGGA
TCCCGTCAACCTGCGCGGTGAAGAGCTCCACTCGGTCATGGTTCGCGCAG
CGCTCGAGGGAGGGTTGGCGCACCACACACCGGAAACGCTGCGCGAGCTC
ACGCGGACCGGGGTGTACAGGGACGCGATGAAAGGAGGAAAGTCGGACCG
GGATCTGAAAAAGGTGTGCCAACGTCACCACTCAAGGGATCCCGTCAACC
TGCGCGGTGAAGAGCTCCACTCGGTCATGGTTCGCGCAGCGCTCGAGGGA
GGGTTGGCGCACCACACACCGGAAACGCTGCGCGAGCTCACGCGGACCGG
GGTGTACAGGGACGCGATGAAAGGAGGAAAGTCGGACCGGGATCTGAAAA
AGGTGTGCCAACGT
back to top